Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT100547.1 TSA: Strongylocentrotus purpuratus WHL22.157791.0 mRNA sequence CGGCAGTTGTCTTCTTGGTCTGAAATGCAACGAAATTTGTTCCAGCAAGCCGTGCGTATGCATGGCCAAG ATCTGTCAATACTCACAGAAAAGCTTCAACAAGGAAATTTTGTTTTCATCGAGAAAGAGAATGAAGAACA TTTACAACAACAGCTTGCGGATCATGAAGCTAAAGAGTGCGATCACCGGGAATCGAGTGCCAATGACCCC GACACGACTGCGGTGGCACCTTACCAAGACGGCGTACATTTAACGGGGACCATGAGAGATCTTGTACGTG TGCAATCGCGTACAACAGCTACAGCCGAGTCCAGTACCGAGGAATCATCCAAATCAGACACTTCACCTGA GATTTTACCCCTGGGTGTGCCAAGGGAACTACACGAACCATTTCAAGACCTGCCACCAAAGTTGTTGAAA AATAATGGATTTGTATCCAAGCTCCATAACTTCATATCCAAGAAAGCCGACCTTCTCTTCAAGGCCACTC CAGCAGATAAAGAACCTGCGACATTGCCAAGCGTCCAAGATACCGTCGACCTGGATTACTATGCTACTCT TCCCCCGCTTGAACAGTTCATGGTCGTTCCTCCAGAACAGTCCAGGAAAAGGCTCTTTGACATCCTTGCC ATCAACGATATCATTGCTGGATCGATCGTAGCCATCAAGGATTTCGGCATGTTTGTCCAAGTGGTGTGCT TATTTGGGAAAGAAGCCAGGTATCTTCAAGAGTGCGACATTGTTGGGCTGCTTCCGAAGGGAGACCTCGG GGAAAGGTACTCCCTGAAAGCCCAGCTGGAGGACTTCAGAGCGGGGAACATGGTCCGGTGTCGAGTGGTC AAGACGGATGCAGCCAACGAGAAGGTCATTTTGACAATGATCAATCAGGGAGAACAGAATGAGGAAAACC TACTCGGTATCATCAACGAAAGTGAGCTTCCAGTGCATTACCGTCGCTCCCAAACTCAGCGAGAGACGCA GGAGTCCTACGATGAGATGCTTGACAATACTCTGGGCTTCGACAACTCCTACAATGTTTCTTGCCTAACC AACATTCTCAGCATTGATGATGCAAACCCCTCTTCTCTCATTCCAGGTCTACAAAGTTCGAATTTTTCAA CTGAGGAGCATGCAGAAGCTCTGAGGAAATGGCAGTCCCATAAGTGGGCAATGGAGAGTGTTGCAAGAGG AGTGGAGCATTTCAAAGCGAGCCGTTATCTGGAAGCCATGCAGCAGCTCAATAGAGCCCTTGAGATTGAT GCAGAGAATGTGGAAGGTCTTGTTGCAAGGGGTGCCTTGTTTGCAAACCAGAACAACTTGTCCAAGGCCA TCAAGGACTTTGCTGAAGCTCTGAGGATTAGACCCTCCCACAAGAACGCCAATAGATACATGTGTCAGAC CTTGTATGAGAAAGGAAAACAATGTGAGGAGAATGGTGAGAAAGAGAAGGCAAGGGATTGTTACCAGAGT GCCGTAGACCTTACCCCTGACTTCCAGGATGCCTTGGTGTCCTTACAAAGACTTGAGAAACCTTCAAGAC GGAAGAGTGTTAGGGAAAAGAGTGAGGTAGTTTTGGTTGAAAGCTCATCCGAAGAGTCCTCTCAGGAGCA GATGTCTGCCAAACAGCTTCGGGAAATGATCAGCGACGAGAAATCATCCACCAAGAAGAAGAAAAAGAAA GACAAACCCTCCAAGGGTCACGAGGATGGGAAAGGCGATAGAAAAGTAAAGAAAGAGATAAAAATGGGGA AGAAGAAGAAAAAAAAGAAATTAAGGAAGAGGAGCTCATCCCTAGAGGTAATCTCCAAGCAGAAGCAGAA AGAATCCTCAAGCGATTCTGAGAGTGAATCGTCAGAACCTCCAAGTCCTGTACCCAAGCGCAAGGATAAC AAGAAAGGCTCCAAAGGTGACAATATGAAGGAACCACAGTCTCCAGAGGGAGGGAGACCGACAGGGAGAA AGCGATCAAGGAATGGAAGCCTCTCGCCAAAGCGCAGAAGCCTCTCGCCAAAGCGCAAGAGCCGAAGTAA AACTAGGAAAGCTGATCTGATCCGCAAGAAATCCAAACATGCTTCAGGGACTTCCTCAAGCGAGGATGAC AAGTTGAATAAGGTAGAGCCCAAGAAGGATAAGAGAAACCACAGTAGGTCTTTAGAGAGGAGTGACAGTT CAAAGACTAAACGGAAAAGTGATAAGAATAGAAGCAGGAAGGAAAGTGAGTCTTCTTCTTTTGTTTCCTC ATCAGAAGAGGAGCAACTTAAGAAGACTAAGAAAGAGAGCAAAAAGGAAGGGAAAGACAGAAGAGTTAAA GAAGAGGAAGTGTCTCATAAGAAAAGGAAGATGAAGACCAAGAAAGAGAAAGTTAAAAGAACCAGATCGT CATCATCAGTGTTTGAAGAAAGTGCAGATTCACTCGCGTTTTCTCCCATGAGGAAGAAATCCAAGCCAGC CAAGAAGGTGAAGAAAATGCATAAAAAGGCAAAGAAGAGATCAGAAAGCGTGTCTTCCCTAAGTGCATCT GGCTCAGACTCTGAGAGAAAACCTTCCCCAACCAGGAAAGTCCCCAAGAAGAAAAAGAAGAACAAGAAGA AGAAACCAAAGAAAAAGGAACGATCGACATCGGTTTCATCTCCATCAGTTCTGAGTTCGGAATCACCAGA ACGTCCTAAGTCACCAGAGGAGCCTGCAAAGAAGATGAAGCACATGAAAAAGACGAAAGAAGAGGATGAT TATTCTGATGGATCCAGCTCTGACAGTTCATCATCTTCAATGCAACAAAAGATAAGCAAAGAAAAGAGAG ATGTGAAGACTAGAATCACTGACAAATCTCCAGCAAGGTCGGACAGACGATCAAGGTCTGCTTCTCTGGT TAAAAAGGAGAGAGCCCCCAAGGTCAGTTCAGATGAAGGAGAAGAAGTCAAGATTGGGAAGAAACGCTCC AGATCAAGTGAGTACAGCGTTCCGAAAGTCAAAGATCATCCTAAAAAGCAATCAGCCAAAGAAGCAATCC ACTCTCCACCAAATGAGAGACAAGGAAGAAAGACTTCTGATATACCATCAGCTGGATAGAGGAGGAGCAC ACCAAGAAGAAAGATGGACGTACCGGAAGAAAGCGATTAGAATCGCCAGAAGGAGATGAAAGACCACAAT CGGTTAAGAAAGAGAAGACAAGAAACAAGGCAAAGGTTGACAGAAAAGGGGAAGAAGATAGAAGTTCAAG GAGAAGTAAAAGACACTCAAGAGCACAATCTCCTGATGATCACAAGAAGGAAAGAAGTGCTTCCAGGGAG AGAAATAAGCAAGATGACAAAGACAGAAAGAAATCCAAAAAATCGCGTTCACCTGCGTCTTTGTCCCCTC ACAGGAAAGAAACTTCTGAGGATAGTAAACAAGGAAAGTTGGTGAAACAGTCAGAGTACAGTGGTGAAAG AAGTGTATCAAAGGAGAAAAATAAAGCTGATGACAAAGATAACAAGAAACAACATAGATCATATTCTTCT GCCTCAGAATCCTCTCCCAACAGAGGCTTTGCTGAGGATCGTAAACAAGAAAAGTCGGATAAACATTCAA AGACCAGAGAGGAAAGTCCTGAAAAGTTGTCAAAGTCGTCCAGGAGATCAAGATCCCTCTCTCCAAGAAC AAAGAAGGAAGAGGAAAAGGAGCAGCGAACACCCATTAGAGAAAGAAAACGGAAAAGAAGTGGCTCTTTT ATAGCTGAATCAAGCTCATTGGAGACAGCAAGACGTGATAGAAAATCAAGAGATGGTGAAAGTGATGAAG AGAAACTAAGGCATAAAAAGGAATCTGAAGGCGAAACTCGCAACAGACATGACTCTTCACAGGAGAGCAG TCATCGCTCAAAATCAGCTGATACTGGGAAAGATAAAAGAAAAGAGTCTCCTAAAGAGAGTAAGAAGAGT CATAGCAAGCATTCTCCATCCCCTCCTGAAAGAAAGAATGATAGACGCAGATCAAAGGAAGAAGCAAAGC AAAACAGATATTCAAGGAGTAGCAGAAGTACCTCAGCTGATGTTGATGAAAGAAAACAGAGATCCAAATC TGGATCATACGATAGAGACAAAGACAAAGAACATGATAGAAGATCTGAAGACAAGGACAGAGATGGGAAT AGAAGAGAATCTAAAGAGGGAAGCAGAAGAAAAAGTGGATCTCTTGATAGAGAGGGCCATACTCAGGAAC GTCGATTAAGTGATGGTGATCGCCACCAAAACTCTGAAGATTCCAGACAGAAATCCAGTGAAAGGGAGCG CCCAAGGTCAAGAGAAGAAGAAAGGAAGAAAGAAAAGAGGGATACTGAGAGAAGGACATCTCATGAAGCA AAAAAGGATGACAGAGACAAAGGAAGAGATAGGAGCAAGGAAGGTCAGTACTATGATCTTGANAGACCTG GTCGTGGGAAATCCAGAGAAAGGGAGAGGTCAAAGGAAAGAGAAAGAAGAGATTCAGGAAAACCTGCTGA CAGTTCCAGGGAAAGAAGGGATAAATCAAGGGAGAATGAGAAGGCTGGGAGCAGGTCTGAATCAAGTAGA GGGGACAAAAAAGTTCGCACAGACTCATCCAAAGAGAATGGGAAAGGAGGGACTAAAGGACAGGAGAGTC AGCATCATCAAAGTCTTAAAGTTGCACCCACATTGAATGTTGAAGATATTCCGATGCCTCCAGAAAATGC ACCTGTTGCTGAGGCCAAGAAAGAACCATCACCTATTCTGTACGTCACATCAAGTTCTTGCAAGGATGAC ATCATCAAGGTTAAAAGCAAGTGGGACACTGACAGTGAAGATGACGAGAGTGGTCCCTCAGGCCCATCTC AGAACCGTAGAGGAGGGGGAGGAAGGGGTTCAACTGGCAGTCAGAGGTCTTACATGCCATCATCTCAACA CAGTGGCAGTAATGGCAGTGGTAATGTCGGTGGTGGACAGAACCATGGAGGCTACCACAGATGTGAAGGT GGGAACTGTCTTGACATCACTTCTGCCTCAAGCAACAGTTTAGACACTCCTCAGAGCTGTCTGCATTTGT CTGTATTGGCAGATCAATCATCATACCATGAGCCTTTGAGATTGAGGGGAGGATGTGTTGCCAGTCCACC ACCCAAGTATGAATCAGACTACAGTGATTCAGACGTGTCTTTCAGTTCTTCCGGCTCCGCGGACTATGAA GAACCCAGGCGAGACAGTTCGCATGAGGGTCAACTAAGGGTTGGAAGGAGGCAAAAATCTTCATCAAGTG ATAGAAGTTCTGGCGAAAGGAGTAAGAAACGGTTTAAGCAATCATCAAGAAGGGAAAGCCGGAGTTCCTC AAGGAGCTCGACAGCAAGCTCTTCGGGAAGCCAGAGCAGTAGGTCATCGAGCAGAAGTGACATTTCTTAT TCATCAAGAAGCCACTCGCGTTCACCGTCTTCTTCAAGGTCCAGTAGCAGCTTGAGCCACAGGAGCTACA GCTCTAATAGCAAATCATCAAGATCAAGGGATTCCTCAAAGGAACCTCAGTCACAGCATGATGAGGAGTC CAGTACAGAGAGATCAGATTCAGAAGGTGCAGGTGCATACAATCTTTTTGATAGTTGGGAGACCTACATG GACAGCAAGGGCCATGATCTCGGTAAGCAGGTGCCTTCTAGCAATAGGAACCAGCGCACTGTTAAACTTG AAGCTGGTGGTAGTACAGTAGGAAAACATAGCAGGAGACCAGATCTTCCTTTTTTAGAGCAAAGCGACGA AGAAGATCAAGAAAACTCTGGTAAAACTGATGGTTATTCTCTTGATAAAAACAATGAAGATAAAGTAAAT AAAACTGCCCAAATTGATAGACTAGATGGTGATAATGTTAGTATTGACAAAGCTGAATTTGACGATTCTG GCCTGGGTGTGACCGGAAATGAGAGCGAATCGAATAGGGATAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds