Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030985770.1 PREDICTED: Strongylocentrotus purpuratus Y+L amino acid transporter 2 (LOC580370), mRNA ACGGTTCGTACGGTTTAGCTTGAGTGGTAAAAACGAAGCATGCGTGTTTGAATGAGAGCGAACGAGACAC CGCATTGAACTCGCGGCGCGAGTTGTAAATACAAACCGTGTATACCAACATCATTCAACGATCTACCAAT ACAAGAATAGGTGGTAGTATTTGGATACGAAGCTAACATACTTCGTATGTAGTGGACAATTCGTTATTGG TATTTCGGTGTTGAAACACAGCACAACGGAGTATACAGGGTACTGTAAGCAATAGTAACACATTTATTTG ATTTTACCATGGTGGAGGATGATTCGAAGCCAAACGGGAACGCGGCGAATGGTGTCGCAGATCCATCGGG GAACTCGCCGGTTCATGGTGATCAGGGAGCCGATAGTCAGGTCGTCTATCGACCAAATAGCAAGAACAAC GATAGCGACATCGAAACCAGACTGGCTGACAAGGGGAAGGAGGCAGACGGTGATGGGGGATCAACCTCTA GTAGCAATGTGCAGCTCAAGCGCGAGATCTCGCTCATGGGCGGCGTCGCGGTCAACGTCGGAGTCATCAT CGGCTCTGGTATCTTCATCTCCCCGAAGGGTGTCCTTATCGGGTCGGGGAGTGTCGGCATGACCATGATC AACTGGGCTATCTGCGGTGTTTTCTCCATGGTCGGAGCCCTGTGCCTTGCCGAGCTGGGCACTATGATTC CGTCGTCGGGAGGCTTCTACGTGTACGCTCAGCAGAGCTTCGGTAACTTCTGGGCCTTCCTGTTGCTTTG GACGATGAGCGGGATGATGCAACCGGTAGCCATCGCCGTGATCTCGTTGACATGTGCCCAGTATATACTC GAACCTTTCTTTATGCTGGCCGACTGTAATCCGCCGGGTGCGGCTATCAGTTTACTCGCCATATGCTGCC AATTTACGGTGATGTACGTGAATTGCCGGAGCGTGAAGTTGGCCACCAGTGTTCAGTCAGTCTTCACTAT TGGCAAATTAGCAGCACTCTCTATAATCATCATCTCAGGCTTAGTCTTACTTGCGCAAGGAAATACTCAG AATTTCGAGAACTCATTCGAAGGAACAGATATGAGTGGATTGGGGGTCGCCCTCTACTCGGGTCTGTTCT CCTACGCAGGATGGTACTCTCTCAACATTGTAGTGGAGGAATTGAAAGACCCTTACAAAAACCTTCCTCG TGCAATCGTCATCACCATCGTCACTGTGACGATAGTCTATATCCTTACAAACATAGCCTACTTTGCAGCT CTTTCACCGGAGGAACTCCTGGCTTCAAACGCTGTGGCAGTGACATACGGAGCTAAAGTATTGGGAAAGT TTGCCTGGATCATGCCTGTAGCTGTGGCTCTCTCCACCTTTGGATCAGCCAATGGAAACATGCTCACTTG CTCACGATTATTCTTTGTAGGTGCTCGTGAGAAGCATCTACCCGGCCTCCTCTCCATGATTAACATCGAG AGAAATACACCTGTACCATCATTATTATTTACCTCTTTACTCACCATCGTGTACTCGCTGGCTGGTGACG TCTTCACTCTTATCAACTACTTTAACTTTGTGACATGGTTCAGCAGTGGCCTCGCTGTATGTGGTCTACT TTGGTTGCGTTATAAGGAGCCTGACAGACCAAGACCATACAAGGTAAACATTCTTCTTCCAATCCTCTTC GTCATTTCCTGCATCTTCCTCATCGTCATGGGAACCATCGCCGCCCCCATCGACACCGTCATCGGGGTCG CTATCATGTGCAGTGGAATCCCAGTCTACTTCTTTGTTGTGAAACCTAAGAAGAAACCAGAGATCGTCGT CAAAGCCAATGACTTTGTCACCCGCTGGTTCCAGAAGCTGATGCTCGTTGTGGCGGAAGAAAGATAGTCT CTTCTCTTGCTGGTTTAACATTGGTCCAGGCACTCCATGCCTATCCAACCAAAGCTAGGAATGGGTCACA AGTATATTCAAGATTGTCAAATTTTCTTGATCAAGGTTGTAAATGGTAATACAAAAAGACCAGTCAGTTC ACAAATGGTTTCAAATACCTCAAGAATATAATCAATTATCTTTACTGGATGCAAATTAGTGCAGTCGGGA TGCAGGATGCAAACATCACATATTGCTATGTCGGGCAGACCTGTTGCATTTCAGGGTCACTGAAGGTATG AGAGTAGAGGAATGCATTCTATTTGATTGCGTTTGTGAAATGATCTTATGGCAGAACAATCTCAATGGCC AGGCTGACCTTGAAATGCCGCAGTTCACTGGGACTCTATTCAAAGGCTCAGAAAAACATCCTTACTAATA AAAAGGCAGGCTTTATCTCTCTCTCTCTCTCCCCTGCTGTAAAGGGCAAGGCCTGCTTTTTGAGCGAGAG TTTCAATTCCAAAATCTTGATCCAGAAAGTTTGACAACTTAAATTTGTTTCTCTCGTGACCCCTCTGCAT TTTGGGGTCACAAAATTGGTCAAGGACGGGTTGGTCAATGGTAGTATGTCACTTTTCTTTGACTTTGTGT GTGCATGATAGTAAGAAATGTCTCATAAAAAATGATAATTTGGGCGATGTTCAGATTCAGATTTTTTTTT TTTAATTGTAGATGACGAGAAAGGGGTAATATTTTCACATTGTTTGCACACATGTGAATGCTTGTGCATC TTTTGTTCCAAAAAGCAATCTACTTTTTATGAATACATACTCCATAAGCTGAAAATGGGTTATATGAGAG CCCGCTTTTTTTACACGTTTTTATGCCTAAAGGGGTCATATTTTGTGGGAAGTGTTCTCGGGAGAATGCA AAATAGGGAAGTTTTTTTTTACTCCACTGTTATCTGTTATGCCTTTAAATGTGAAGCGACACTACCAGTA TCAAGCGCCTCAAGAGAATGACATACTTTTCTTTTGGACAGATGTTTATAATCCTATCTGTTCCAAAAAG GATGTATTTTATTTTAAGAGCAATAGTCCATTTGCATTTTCTCCTTCTTTTTTGTACAGTTGTGAGGGAA AGGTTTTTACAGAAGTTTGTCATTAAGTCTGTAGGTGAATGTGTGCATATTTTTGCTGTGTTTGATGAAG ATAATAATAATATGTTTCACCCTGATATTTTAATCACAATCATGAGAAACATGAGCACTGAAATTGATCC GTCTGAGATTGTTATTGACAGATCACATTATGAGCAATAGGGATTGTATTGTGATTGTGTAGATAATTGC GTTGACTGCCATTTTAGAGTGAATTCTTTCATAATATGATGTTCTGAAGAGATTAACAATAGTCATTAAA CATGAAATTCAGATTATTTCGATTTGTAGATACCTTTTCATGATTCTAAATTTATTCTAAATTTGGAAAT CATAGATATCATGAAAGAACCAAGTTTGTTGCGCACAAATTGTCTTATGAAAAATAAAATAAGAGTGATA TAATACTTATTTTAACTTATAAGAAATACATGTAATTGACAATATATGAGCACCACTTTTATAGATTCCT CTTATCTGTTAAAACAATTTTGCTAACATTCAAATCTTATTCTTGAAACATTTGTTTAACTTTTAAGATT ATTTCTGAATGTCAGTGTTGCAGGTGCCTGGAAAAGAGTGCCATGCAAAAAATTGGCATGTTACAAGTGA ACGATAGATGTTGTACTGAATCAAAATAATGAGTAAGTTTCTATATGGCATTGTGTGTGAGTTGTATTGG TAGCAGGTATATACCACATGAACCTCTTGCCTTGTGTTAGCCTATGGTGTAGGGAAGGAAGAGCATATGT AAAGTACAGTTCAATATAATATGTTCTATTGTTGTTTTTGTTGCCGTCATATTTCTTCTTCTTCCTTGTC TACAGCATAAAGGACACCAGAACATTTATTTATAGATCAAGTAAAACGAAAGACATTTTCCCAAGACAAC TGTCCCATATATTGTATCAAGAAATGTTTATATTAATGTGTGATTTATGTCATTGTCTTTGTACCTTTCT ATTGATGAAACTCTTTGAAAAATGTATAGCGACCTTGTAAGGTTTTATGGGCATTATCTGCTCATCTGAC ACTATTTATGTGTTTAACTTGATAGACTCATAGTGCCTGTCACTTTCTAAATAGTGTATATATATGAGAA ATTAATTCATACGTAGGAATTATTATGCAATCATCTACTTACGTGACACTTTCCTTCTTCTTTTCCTTCA TCTATCAACAAAAGACATTCCATGAAATTTGTTATTATATAATCAATCAGGGTTTTATACATGTAAACTA AGATATTTTTCCTCCAGCTAAATGTTGAGACAAAATCATGGTGAAAATTCAAATTTGTAAGTTGTGAGTC ATACCACTTTAAAATTTTCTGATCAAATTCGAAGAATCAACACAGACTATATCTTTAGAGAAATAGTATG TACTTGTAAGGTGTTATTGCTTATTGCTTAACACTTAGAAATATATATTTTCAGACATATTAGAAATATA TGTAGAAAATACATCAACATGTTCATCTCGTTACAGAGATATAGGCACATAAATGTTGTTTGTTTTTTTA AATACAAGATTTATATTTATTTATAAAAAGACTTATCACTAAATAATACAAACTATATAAAATGTTAGGC TCATATTAAAGGACCAATATATATTGTCTAAGAATACTGATGAATTTCTCATTAATCTAGATTTGTATGC ATACCATTGGTTCTAAAGGTCAAATAGCACTATCAAATTGTGCGCATTTATAGGTTTTCAAGATAAGACT AGTGCAATTTGTAGCTGTATCGATTACAGCAAGTGTTTTAGATAATATTTATGATGACTTGCGACTAAAG AATAGCCATGGTTCCCTGTTCCTAGATGCTGTCAACAATTAATTTGAACAAAATATCCACTGTAGAGGTC ACAATCCAATGAATTATTCACATTAGGAAAAACAAAATTGTTGTTGTATTTTTAAAATATGAATATGAAT AATCTTTAAAATGTCTTGTTTCATGTTTTGTTTAAATTATGTTTCTTATGTGTATTTTTTTTTCTTTTAG TGAAATTGTGGTTCTTACATTATTTTTTTTTCAATCCATTTTCTTGATATTTACTTTCAGGAATATATTG CATGTTGCTACTGTTTATATTATAAAATACATACTGAAGTCGATTGCAGTATTTTGGGGACGGAAAGAAA CTGTATGATATAAACATGCATTTATTCTGTAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds