Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT102439.1 TSA: Strongylocentrotus purpuratus WHL22.386521.3 mRNA sequence TGAAACCATGCCACGAACGGCCTCTCATCAACATGGAGTAAGCAGAAGCGGTGTGTATTATTTGTACTTA CGACTCGAAAACAACTAAGCAATTATGTCGGCTTCGGGTAGAGACCTTCGGTAAAACAGTGATGTTCATT TTAGAAAAACAAGCATGATTACCGAGCTCCAGAGCTGTTTTCTTAGGCGAGAGGAATACTTGTACATCGA TATTGATATTGTCCATTGATAATTGCTCAACCTCATCCTTTCCCCCCCAAACAACCCCACATTCCATCTT AACCTGGCGACGACATACGGCTCCAAGATTGGGCTACAAACCAGAACACCAAACGAAGAGTTCGTCCTGC CAGCGTTCCCGCCGGAGCAAAACCCAGCCCTGGACGGACCGGGGGACAGACCGAGGTTTCCGTTTGGTAT GCCAGCGCCGGGAATGCCTGTACCGATGGACGGACGCGACCATGGTTACGTGCCGAGGCACACGCCATTC ATCAGTCAGCCCGACTACAGAATATATGATCTCAACAAAAGGTTACAACAGAGAACAGAGGAAAGTGATA ATCTCTGGTGGGATGCCTTTGCCACAGAATTTTTTGAAGATGATGCAACACTCACCCTGTGCTTCTGCCT TGAAGATGGTCCAAAGAGATATACTATTGGACGAACACTTATTCCGCGTTATTTCAGAACGGTGTTTGAA GGCGGTGTGACAGATCTCTACTATTTACTTAAGCATCCCAAGGAGTCATTCCACAATACGACGATCACGT TAGACTGCGAACAGACGACGATGGTCACGCATCACGGCAAACCAATGTTCACAAAGGTTTGTACAGAAGG CCGTCTGGTGGTGGAGTTCACATTTGACGATCTGATGCGGATCAGGTCATGGTACTTCGACATTCGGCAG CATAGAGAACTCATTCCAAGAAGCGTCATAAATATTCAGGACCCTACGATGCTGGAACAGCTTTCTAAGA ACATCACCCGACAGGGTCTAACTAGCTGTACTCTCAACTACCTCAGGCTGTGTGTGATCCTGGAGCCGAT GCAGGAGCTGATGTCACGACACAAGGTGTACAGCCTCAGCCCTCGTGATTGCCTCAAGGCCACCTTGTTC CAGAAATGGCAACGTATAGTCACACCTCCCGATACCAACAGACCGCAGCAGAAACGACGTAAGAGGAAAT CATCGACGACACTCTCGACAACGGGGGGTAACAACCTGGGTATGAACAATATCGGTGGGGGAAACAGTAA GAAAAAATCACCGGGCAGCTTCAGTTCAGACGGAATGCCAACGGATGTGATGGTGGTCGGAGAGCCATCG CTTATGGGCGGTGAGTTTGGCGACGAGGACGAGCGGCTGATCACGAGGCTGGAGAACCAGCAGGCCGATG CCAACAACGGCATGGACAATGATGAGGACTTCGCAGGAGGCGAATCGGGGGGCACGGGTCCGGGTCCCGG CGGCCCCAAGTCCACCAATTCATCATCGGGCCCCGGCGGCCAAGGGTCTTGGAATTCAACCGACACTAAG CCCCCTCCTGGAACCAATCCTCCACAAGATGAGAAACAGGTAGCAGCATCACAGAACTGAACTGAACTCA AAGGATGCTGCCCCCAGCATTGCTCGATCCACAGGAATACTGACAAAAGCAGTGCTCTTGCTCTTTGCCA TGGGACTGTTTTTTTGTGTGACGACATACTGGAATGACTATATCTTTTCCAGTGGACTTATCTTCCCCAT TTTTTATTATTTTTTATTTATATCCATTTTTGGGGAACAATTTTTGATGGCCAATTTTTTCTTTTTTACT CCATTTTGTTGTATATACATGACTATGTTTACAGCAGTGGTATTATATGTTTTTTGTGCTAGTATTATTA TTATTCAAAAGATTAAATTATTGATATGTTGACCCACCTTTATTGAGTAAGTGGAACGAGTCTTACAAAA TATTCCACTTTGACGGAGCAGCACCTGTGAATCTCGAGGTATTCAGAAGTACTAAAATGATGAAGCCTTT GTTGAATATTGACTATCAGGACAGACAGGTATACATATATTATTCACAGTAGTTACAACCATAGATTTCT AGGTATGCATGTAGGTTAACAAGATAGATGAAATGAAACTTAAATTCCATCCTTTATTCCCCTTGATCAT TAATACCACTGCTGTAGCATTCTATCTGTCGTTTGTGTGTTTCATAGTTTTGTATATTGTAAATACGACA AATTACGAAAGGGTGATGACAGAAGCCAAGACTTGGGTTCTCTACAATGTGTTTCCTACAAAGATGTCAT TTGGACATTTACAACGGGGCATAAGATATTATCTTCATCTATTGATATGATTCTTTTGTTTTCATGTGTG ACATCACTAGTATATGTCTGCCACTATTTCATGTATGTTTTTTTGACCCCCTCCCCTGTCCCATTTGTGT ATCCCTTCATTCTCATTGAAACTTGCTCAGTCCTTTTGGTTAATAGTTTTACGTCAGAAGATACAGTTAA AAACTAGATTATTCATACCCCTTTGTAAATTCAATGTTTTTTATTGTTGTTTTTTCCTCATAACTCAAGA ATGACAGGTTGACTGGTTGAATTAGGGCCTGTGTTGAATACTTCAAGATGTATTAGTATTAATAGGTCAC ATTCTCAAGAAACATAAATCAGGGTAAATCAACTTTTTACGTACTTATAAAACTACAAATCTTGGGAAGG GTATGAATAATTTAGTTGTTAACTTTATAATTTTTTTCGATCCAAACTATTTTTCACAATTTGAAAAATG TATTTCCCTTTCAATATGGAGAAGAATTTTTTTGGTCTTTGTCTGTTTCTATTCCAAAATGAGTCACAGA GATGGACAAGCCAAGTACCTCCACCTTTGTGTCATGTCATATTTACAACCACAACAATAACCAAGAAAAA AATTAGTTATTTTGTTGCTTTAGTAGTTGTCTCGGCAGTACTGACATTTCAATTGGCAAATTCAAATTGA AGTCCAAAATTCAAATTCTTCTTTCTTTAATAAAAAATTCTGGCCTGCAATGCGGTAAAAGATATCAACG TAGTGTACTCTAGACCAGTCTAATTCACCTTAAAGTTAATTTGTTGATAATTATAAAAGCTTTCACAACA GAGAGCAAGTCATACTTTAACCAAATGGTATCCATTTGGCTTGTGACCACTGGTATGTTATCCTGGGGGC TGTTTCTCGAAACCATCATAAGTCTAACTTCTTAAACATCCTATTGAAACGTGTGTTATAGAACTAACAT GATTGTCTATGGGATGTCCACGAACTTAGATTTACGACGGTTTCAAGAAACTGGCCCCAGCATTCTAGAA AAAACATACCCAATTTAACTGCAGCCAGTAGTAGTACATGTAGTACCTATGAAATAAAATCAGCTCTATT GATTTTCAATCCTTCTTCCTCTGCATTCACAGTCTTTTCTCCCCTCATGTTTAATGTTTTAGAGATACAT CATTGATATTTATTGTTACTCAAATCACTGTATTTGTACATATCAGATATGTGTTTTTTCTTGTGTTTAG GTATACAAGTGTTTGTGTATTGTGCATTTTATGTTCATCATGGTGCACTGCCCGTAATGTATAGAGAGGG GTGATTTTTTTTTCAGTAGGAATTTATTTTTGTTGAGATGAAATCAGTTATGGTCTAGACATTGGCAAAA CATGATGGGTCTTTCCTTGTCGTTAATAGAATTGTTCTACAGAATTTAGGATTTTGAATAGAATGAAGAA TGTTTAGAGCTATATTGAAAGGTTTTGTATCATGTCTCGGAAGAGGGGAGTCAGTGAATGTGGAATCTGT CAAACTGAATCAGGAATCGTCGTTTTCATATCATTTTGTAAAACGTAAATCATAATTGTATCACTATTCC TGTTATTGTGTGCTTTTTTAATCTTTATTTGTTATTGTTGATATTGATTCATCATGAGTAATGAGCACAA AGATTTAATTGACACTTACACTAGTATTAGTGTCTTTGTCTTATCTCATTGTTTCTTTAATGAGGTTGGC TTTGTTATGATCATGCATATCTGTATACATTGTTCCAGATTTTTTCTAAACTTCACAAAAATGTCGATCT GCCCAATCATTGCATTCTCTTAATTCCCTCAAAGCTAGGAGCGGTTGAATCGTTATATTTTGCATTGCTG ATTTTTTGTTCGTTCATTATGTCAATGAAAGAAAATTTGATTCATAAAAAGTAAGCTGAAGACTGTATTG TTCAAATAAAATAAATTCCTTGATATCTTCATGAATTTCCATATCCACAATTTCAACTGCTATAGTTCTT ACTCATAATTGGTATTCTCCTTCAAATTTGTGGTCTAATTTGGCATCAACATCGGTTACTTTGAGTACAG GTATGTGTATTAGACTCGTTGATCGTGTAGAATTGACAGTGAATTTTGAGGTACTTGAAAGAGCATGGTT AAAGATGTGTGTGTGTGACAAGCAGTGAGTAGGGGGAGGGGGGGGGGGGGAGGGGGTAGGGTCGGGATAG GATGGAACCTGCAATTCTAAATGACTTACTCAAGGTTTAAACCCATAGATTATAGATAACGACTGTGTGT TTGACTGGTTTTGACTGGCTTGGACTGGTTTCGACTGACAGGGAAAGTCCCAAGAACTCGTTCCTGCAAT CAACAAGAAGACTCCATATCGTCTGCTGAGAGCCAGAAGGGCGTTAACTCTGTATTAACTCTGTATTAAA ATGATAAAGAGTTTGAGCCCTTCTGACCCTCTGGAGAAGATACAAGTCAATGTCTCCTTTCTTGAGATTG TCCATGAGTGGCAATGGATGACTTGTATTGGGTTGGATGTCAATTGTTGTTTGGAGGACTATGTGTATGT ACATATGGATAGCATACAAAGTTTGTACAAAAGAATGAAAGGTCATGCGATGAGGTCATGACCCCCTGTA GTATCAATAATCTCTATTCTCTGCTGCAGTGTATAAGAAGAGAATTGATTTCAGTATTTCATATCAATAA TAAATTTGGACTTGGATATACAATATTTGACTGCCATTGCTATTTTATT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds