Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038196634.1 PREDICTED: Patiria miniata nucleoside diphosphate-linked moiety X motif 19-like (LOC119725276), transcript variant X1, mRNA TGCGAGGCTGTAAAACAAGAGGGCGCTGTTCCAAGCATGTAACTTGTAAAATTTACTTGTAAAATGTTTG GACTTTAGTTAGCTAATTAGTAACTCTCTTAAAAATTGAAAATCACAGCTACAATTTCGAATGTGCAGTG CTCACAACATCAACTTAGTTTCGAGGAACTTTGAGCGAACTGTATATCAGTTATCTTCAGGAGACAACTT TCTCAAGACACAAACCTCCACCATGAAGTACTGGAAAGAAGCTGCCACTGTTATCCTTGCTGCTAGATTT AGAAACCCTGGGTCTATCTGCCACCCTGCACCATCGGCTGCAAGTAGAAAGCCTACAGAACAGGAACATA GCACCACAACTGGCTTGGTGAATGCATGTTTTGATTACAAGGTTCTGATGCTTCAACGAACCCATCATAG CTCATTCTTTGCAGGAGCTCAGGTCTTCCCTGGTGGTGGGATAGACGAAGCCGATTATTCACCCAAATGG ATGGAGCTCTTTGCTGAAGTTGGTATCCGTATCCCGCAGGATTTTGGACCGATGGTCAGCAAACAGCACG AAAGGCCACCCATGATAGCAGCTGATAGAGGCTCTCCAGTACCTAGCGATATAGCCTTCCGGATCTGTGC CATCCGGGAGACATTTGAGGAATCTGGGGTTTTGCTGCTCAAACAGTTCAGTCATTGTCACCCGGCCACT GATAGCATGCCATCAGTTCAACAGAACAATTCATCTAGCACTCCAGATATCAGTGTTGAGACATCCAAAG AATGGAGACATCGTGTCCATAACAATGCAGCTGAATTTCTTGAGATGTGCCGAGAATTGAGAAGTCTTCC AGATGTGTGGTCGTTGGCAGAGTGGTCTGACTGGCTAACACCATCTGATATGAGGAGAAAACGCTATGAC ACAATGTTCTACCTGTGCTGTATGGACACACAGCCTTCTGCTTTGCACGATGATAAAGAAACCATTCAGT TACAGTGGGTGACTCCAAGCCAGTCACTGGCCCAGTATTCCGAGGGGGAATTCTTCCTGCCTCCTCCCCA GGTGTATGAATTCCAACGTCTCTGTCGCTTCCCAAAGCTGTCTGCCTTGTTCAACTTTAGCCAACAGAGG GCACTGTTGGGATGCCAGCGTTACCTTCCTGTCAGGATGAATTGCTCCAACGGGGTGATAACGACATTGC CAGGGGATCATTTGTATCCTGACCCGCTCATACTGCAAACCATACAAGATGAACTCATTCCACAGATTGA GGGAACTATTGAGGAGAATACAGACACTAGCAAGCCACTTCATCGTCAGATGTTTGCATTGAGTACTGTA CCAATGTGCCAAGCAATGTGTAGCTTCACATTACCTTATGGTCATTGTGCACCGCTACCATATCAGGAAT GTGTGGACTTACATAGCCAGAGCTCCAAGCTCTAGGTTGTGTTACGTGACCATAGAACAGAGATTTCCTG TTTGAATAGGAGGACAAAGGAATTGACTGGAAAGGTTTAAATTTAAACGTGCTAGGCAGTCAATGTCTTT GCTCAGCCGTAGAGCAAGGAAATTGATTATCCTATAGATTTGTAGGATTTCCTGTTTCAACAACAATCAG ATGAAACTCATTAATTGCCATGCAGAAACTTCAAACAAACTATTCAGTTTTGTAAACTTTAAATCGATAC GAATCTTCAGAAACAATGGGTTTTTTTCTCAAAGACAGTTGTTAATTCACAACATAATTAACAACTTGTG ATAGTTTCATTTGAAGAGTTATTTCAAAAACGTGAAAGTTTCTCCTTGCTACCTAAAGTCAGTTTCGATG GCTGTTACATGTACATGTACATGTATATAGCTGAGCACAATTTAATAATGCAATAAAGAAATATATGAAG TCTAGAGGCAGCCGTTATATCGTTTTCATTCTTAATAGTATCCAATGCAACATGAAAACCAAAAACTTTC ACCACTCCAGACAGTATCTAAAGAACTGTCTCTGTGTCAATCAGTAAGTTATATCATTTATTGATCTCAG ACTTAAAGTACTCTCCAAGAGAGTACTTAACGAAACAATAACCATGCAAACTTTTCACTTTTTACAAATG GGTATGTGGCATTTTGGAAATGAACTCTTCATATATTGAAATTGACATCAACCACATTGTGCACGAATGA AGGTCAAACAGATGTCTCTCTCTTGAGAAATTCACACTCGGAAATGTTGCACATTTGATATTGAAAATAA ATAGCTCTAAACACCCGACAGACATTGTGAGAAGTGGTGAGTTGCAAGCTGTCAAGGATTATTCAAACCT GGAATATTTAATTCTGAATTTAGTATTTATATTTGTTTTAGTGCCTCAATTCATAGTCAGATAACAAGGA ATCAAGGCAGACCCTTACTTGGCAAAGTCTGATTTTATTTATTTCTTCTAAAGTAAAATAAAGCAGAATT GAAATTGTAGGTCTCATTGTACCACACAAATCAACCAGACAATAATGGCAGATAAGTTTAATGAAGAGCA TTAATGTCATGGTAACTGGCTAGTAACCTCAGATTGACTTACGTAACAATTATGGCTATGTATTGAATTG AAACACTAATTAATAACCTGTTGGAAACAATGTTTAGAATTATATTCAAGCCTGTATTTTTCAATCTTTC TGTAAAAAGGAATTTATATCTTTATGCACTATTATTAACTTATTATAATCAAAACATTCAAACATCCATT TGTAGTGTCATAATTCACTACCAGTTATAGTAATCTTGGACAATACTAATTTTGGTTTTCATCACCTGTT TCCAAATTGAAAGTCCTTTTCACCTTTCAGCCAGATGCGGTTGCATTATGATAGCATTCCATCTGACATC TCTGTCCATTTAAAGGAAATCTATAACATTTGCAAACATGAAAAACCAAAAGTACCCAATTATTATGAAA TACCTTACTTGACTGTAAAGTGAATAATAGTCTCAAGCACCCTGTGAAATCATGGCACCTGGTGTGCTGT CATTTTCAAGAAAAGTGGAATTTTTGTATCAGACAACCATCGTTGGAAAAAAAATGGAGAATTTTTAATG TATAACCTGCCCCCACTTTAGCAAATTTAGTTAATGCACATTTTGTTTGCAATCGGCTACACATCTGTGA ATGGGTGCAACCCAGCTTGTCTGGTTCCCTGACCCAGCAATTCCCTGACGTCTATAAATTGCTCTGTTTG ATCTGAAGTAGGGTCAGGGAACCAGACTCTAGTATTTCCTTTAATGACATTGCTCCTTTCTCTAGAGGAA AAGCCAGCAACATCCCTGTGTGTACGTTGCTAGCAAACATGTCATGTTTGGTGACCCAGTTTGCGGGCTC AGTCTGTGAGACTTACGTACCACCTTTCCTAATATGGACACCACGGTGACCGTTTTAGCCGAATTTGACA GATTTTTTTGAAAAAAAAAAGACGAGTTTGACAGAAAACTTAGCAAAATGAATTTTTTAGCAGATTTCTT GCAGAATTCTGTAATATATGTGGTTTGACAGAAAAATATGGCAGAATTGAAAAATATAGCTGATTAGTTT TGAAAAAGCTTCAATTTGAGGTTCCCTGTCGTAACACAGTAAAGTACTGTAGACCATTGCAAGCTTGAAC GTGCACTGCAAACAAATTAAATTTTTTTTTTTTAAGGAAATGTTGTGATTTTATTTTTTGTTAAAGGAAT TTTATAACATTTGGCATGTGAGTATAAGTGTTTATAATGTATTTGGCAGATTTCTGTTCAATCTAGCAGA TTTTTGAAGTGCATCTACATGTACATCTGTACATGTAGCAGAATTTTGCCATTACCTTAAGTTACGGTCA CCCTGATGGACACAGTCATTGTGATTCAGCTATCAACTCCTCCTATGTGTGCTTTTTAGCAGAAACTTTT ATAAAATTAAACTACAATGCATATTGCACCGTGTTTCAGCCGTTATGTAATATAAGTTCAACTATAAATA GGATCCTTGAAATGCAGCTGTATGCCTAATAAATAAATATAAATTAATTTTTAGTCTTTGATTACATGTA TTGTGATATTTTAACGTTAAAAGCTTTTTTACGCAAATTAATGCAATGACAAGATCCAAGTAAAACAGTG ATATTATTAAATGCCACAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds