Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT100500.1 TSA: Strongylocentrotus purpuratus WHL22.316579.0 mRNA sequence ACAGTTTGAGTAATGACCTGCAGCTGTCGGATGAAGAAAGCGACAATGAAGAGACGCAAGAAACCAACAA TAGGAGTTTGAATTCCTCGAGCGAAGCTTGCGAGGAAACTTCTACACGTAGCTCTCAAAGACCATCATCT GAGATGAAGCGGTCAGACATCGAGAGCTCCGGCAGCGAGTCGGACGCGGAGAACACGTCGGAGAGCGAGA GTGAGAGCGAAGAGAGTGATATTGATGAGACTCCGCCTCCATCTCCTCCTCCTCCTAAGAAGAAGTCATA CAGCTTGATGAACCAGATCCGGAAGGTGCAGAAAGAGATGCCCCAGATGGCACCAAGTACTCCTCCAATC CGTGGACCACCCAGCGTAGAGAACCCACTCTCCAATTCCAGGCTAGATCCAAACGAAGGGTCCAAGCACC CAGAACAGAGCGCAGAAAGCGGGGACGACAACGATAACTTCAGTAAATATAACAACAGCCAGCCTCCCAC CTTCACAGATTTCCATCAACTCTCAGAAAGCTCGCACGAATCCAAAGCATCTCCAAGCTCTGTCAAATCA AAAGGAGGTAGCAAATCATCGACGAAGCCGTTGGGCAGTAGTAAACCGACTGTAAAGCGCCCTCAGTCAC GGACAGACAACTCAAGTAGCTCCAAAGCGAGCAGTGCGAAAGACACTAGCAGTTCACCCAGAGTTAAACC TGAATCAAATTCTAAAGAGAGCACCAAGGCTAAGAGTAGTAAACAGTCCAGTAAAAGTGCTAGTAGTGGT CAGAACAAAAAGTCCCCTGGACCTGGGGCTGGAGCAAAGTCCAGCAGCAAATCCCAGGAGAAGAAACCTG GACAGAGGGCCAAGACAAGCGAGAAGAAGAAAAATATCAAGCCAATTATCAAGTCAAATCAATTTGTTTC GGACTCTGATTCCGAGGATGAAAGGACTCCATTGCGGCCGTCGTCCAAGGCGGCCATCAACACTAGCACG AGTAGTAGCGGGAGCAGTAGCTCCAGTAACTTGGACACCAGTTACCCTGTCAGGCAAACCAAGGTTGAAC CGGACAGCGGCAAGCGCATGCCAGGTGTAAAAAAGGGCGATAATAAATATATTGTGAAACCAGAGCCCCT GGATACCTATGAACATCGGAGACCACCTTTTGATGACTTTGCTCACATGGACCCTATTGTTTCCCCGATA AGGGCAGACTTCATTGATGAGCAGTCGCGTCCTCTTGACCGCCATCCGGAAATCAAGTTTGACAAGGATG GCAAACCGTCAGTGTTTGTCAGGTTAAAGCGGGAGCTCTTTGATCACTTGCCAAAGTCTAGTGTGATCAA GTTTGAACAAAACGTTCCTGGAACTTCAACTCAGAAGCGGAAAGACTCCAACGACCCGCCTGAAAAACCC TCCGCAATCGTAAAGCCTGTCAAAAGGAAACAAACTGAACTTGAAAAGGAGAAATCTGGGAGGCCGGAGA ACAAAAGATCAAGAATAGAGAACAAGTCACCGAGGAGGATGAGAGAAGAAGCTCTGAGGGGTGTGAGGGA CGAGCCCACCGAGGCCCTAGAGCCGTTTGTATCGAGTGAGAGTTCACTAGACAGGCGGCAGTCTTCAGAC AGGAGAGGGAGTGTGTCAAGTATGACCAGTCAACAATCCTCACACAGTAGCAGGAGAACCAAGAACGATT GCGACCCCCACCATCCATCCAGCCGCTCCAAGCGGGACAGCAGCCGCAGCCGAGACTTTGCCAGCCAGCG CCTCCACGACTGGACCAGCCCCGAGCGCCATGCTGATAGACAATTCACAGCAGACGACTACCTAGCTGAG GGCAAGAAACTCAAACACTTAGCTGATACTCAGGTGGACAAGCACGCCAAGGCACTTACTTACTTTGAAG CTGTGGTATATCTCACATCCTGTGGCAATGTCTTTGAGTTGGACCCGCTCGTACCGGATGACAAAGCTGT CACCATGTATTCAGATACTTGTGAAATTATCAGATATATTCTAAAGCTTAAAGGTATTCACAATGGCCAG GAGGGGAATAGCAATGATAACAAACTAGCCGTGTTGTGCTACCGTTGCCAAGCGTTGCTCAACATGCACA TGTTCAAGCTGAAGCGACAATCAGCGATGAACCTATCGAGAGCGCTAACTGAGCATCTCAAGGGCACGTC ATCCAAACCTCAACCTCCGTTACAGCAGAATCCATCTTCATGGAACTCGTCTTCAAGGTACACAGGCACC CCGTCCCCCGTCTCTCCCACCCCTTCCGCAGCGGGCAGCGTGGGCTCGGCCTGCAGCATGGGTTCGCAGG GGAGCACGTCCAGCGATTTGGTCCCCTCCCAGACTTCAGGGGGCGGCCCAGCCCCTCCCTCCGGCCCCGG GGCCAAACTGTGCAATGGGCTGAATCCGCAGTCTTCGACGGTAGCCATGCCGCAACACATCGTCCGTATC ATGTCCCAGTTTCTCACCTATTCCAACTACAGTCTCTACAGCATACAATATTGGGAGCAGGCTGATATAC TCACAGAAGAGAACAAAGATTTCTTCCGGGATTTGGCGCGAGAGTGCGGGGAGCTTACACTTCACAGCAG TACTCGGGACTTGGTCCACTACGTCCGTAGAGGGCTAACTAACCTCAGACGCTTGTGAGACAGACGCCGC ACCAGACTCACGGTGTTAAACACTGGTGTTAAATAAAAGAGCTATCCAAGCAAGCCATGCTATGGAGCTG GTGTATTTAAAATGGACATGGTAACACCATACTTCAGTGCCAATGCCACGAGCACTCTCTTATATGCCAT AGAATGGACATCGCGCTACCAAATATATTAAGTAAATGAGTGCTATCGTCAAGAAAAAACCTGTCACCAC TGTACACAGTTTCAAGAAATATCATTGTAGTCGGCAGCAGGGGATCAATCGGTCATGAGAAACCCAAGTC TCAACTGAGCTACAGAGTATTGTGCTAAAGTAACACCGAGTACCTTCTACAGATGAACAAAGAAGTCGGT GCTAGTTTCAATCTGAAGAAGAATCCTACAGTCCTGTACTTACTGATGCATTATTAATTCTCATCAATTG AGCTCTGTGGATGAAAACTAATCTGTGATGGACAGCAAAAGCATGCAGCTCAATTTTTCATGATGAAGAA ATTTTTTTCTTTCTTCAAACCAGTTACAAAATTGCCTTCATTCCAGCCTTGATGGAAAATTATATTAATC ATGGTTGCAGAAATGGGCTTTTATGATTATGGGGAAATAGAAGAATGGTTGTTAGTCCAAATACTAAAAA TCATTGCAGGTTAAAGAAGTTATTTTTAAATCTCAAACCACAGATGAGCAGTAAAGTAAAAATAGATATT TGATATTGATTAAAAAAAACCCTGGGGAATATGTGTTTTTGTACACAGTGTTGATAATGTATATGCTAAT GACAGATCTTTTTTCTTCATTTCAAGCAATGAAATCTTTCGTGTTCAGAGATCAAAATAATGTTTCATAC AAGGCAAAAACAGCTGAATTATAATACGAAATTGGAGTTAATCACCTTTTTTTTCCACCTTATATATCAT GGATGATTATGCCTTGGAAACTCGACAAAATTATGAATTCAATTCTTCCAAATGACCATTCTAAATAATC CTAAGAGGATTGTGAGGTCTTAAAATGATTGCATAAAATGAAATGAAGTAGATCCTATTAGGAATTTACA GAAATAAAGGGAAACATTTTTTAGGATATATTTTTATATATGACTGGTTTGGAATAACAAGTTTTGACAT ATACAGTTTCCCTCTTAATATGAAGCAGAAAAGAAATATTGACGAAGAAGAGCTGTTCTGGATTTTTTTT TCGCCAGTTTTGAATATAAGTAGGACTTCTACTGCACAAACATGTTTACCATTTATTTTTCTAATTTACC TTTTCTTAGAATCTTTATTGAAATATATTTTCTGAATTTGCTCTAAAAACAATGGAATAATCGTTAGAAT TTTCAATTTAAATTGTTTTTGAAATTGTTATTACTCCACAATTCAATTATTTTGAAACCTGGTCTTGTTT ACTCAAATCCACAGGAATTTTTAGTTTCCAAAACATTATTTTTGTACTTGTTTTTATGACGGAAAGCTAA AAGTTTTCAGTGATGAAAGAAGCCATGTCAAAACATTGTATTTTGTGTTCCGACAGCTATTAAGAGTTCA TTGCTTCGTCCCAAGTCAAGAAGCGAATGGCATTATTGTTTTTCTGAATGTAAATCTCGAAGAGACTGTT GATTCAAGGGCCCAAATGCCATCATATCAAGCCATTTTATCCTTTGATAATTGGATTTTATCCTTTGATA ATTGGAAGAAGAAAAAAGAAACTAACATGTTCATGAAGTGAACTAGGGCTTCCAGCCACAATTTATCAAT TATTACTTCTGGAATCATCTTAATATTTCTCTCCCTCTTTTAAATGAAATATTGCCATTTCTTTAGAAGA CTTACTGGAACATGGTGTTTTAATATTTGCTGCCATTACACTTATTTGGTCATGGTACATCTAGCCATAC ACATGGGTTTCTCATACATATTCCAAAAGAAACTAGATGGTTGCATATTTCATAAAATTTGCATTGTTGA ACCAACTGCCTAATTGTTTTCAAAATTGACATTATAGGTGAGAGTTTGAGACCGCTGTAGGCTGCTACTT AAAATTGTGTCGATGCTCAAATTCCGTAGATGAGCCAAAGTTATCCCTAATCGTCTACAAACCAATGAAC TGATCAATGTGTGGTACAGACTGTGTCATAGAATCTGCCAAGATAATCAAGTCAACTCGAGGAAAGTGAG GAGGAGAAAATGATCTCGTGATTAGACAAATCGCTGCAAAATATTCCGAGTGTCTCAACTCGCAAAATCA TAAAACATGACATAGTCATGCCAGTGTATATTTATATTGTGAATGTCGTACATCGAGTGTGTAGAAAAGA TCATTGTCACAAAAGAGAACAGAGTACGCTTTGTAAATGTAGAGATATTACAAAAAAAATCGCTTGTACA ATTTTACTGTTGCTATTATTGAATAATGAATGAATGAGTATCTAATGCGCCACTGCTCTCTCAATATTGT ACATATTTATTCCACATTTTTTTTAGAGAGAGGAATGGAGGGCAAGTAGTCGTGTGACGGACGGACAGAC TATTGCTTCCACATTGTGCTACGTACATACGTGTAACTACTGTATTTATTGCTGTACATGGGTTGTTAAT GTCGTCTTTAAAATTGTGATCAGTTCTGTACGATTCTTTCTTTTCTTTTTAAGCTATACAGATTTTTATA GAGCAGTATTTCTGAGGTTGCATTTCTTTTTCCACCTTTTTCATTTCTTGTTTTTTTAGACGCTGGCTGG TTGATGTATACAGTACAGGGTTGATGTGTACCTCTCTATAGTGTCTCTATGTTATGTATGTGCCATGATA TTACCCCCTTTAAACTTATCAATCTGAAATCTATATGGACAGTAGTTTTAGTATATATAAAATTTCTGCT GAAAACAAGCAGAAAATGGGTGTTTTTAGAAGGATAGGATCAAACCATTTCTTTAGTGCGAAAGTGATGA AATACAAAGTAAGAGTTCTTCACCCATTCCAATTATTTTTTGGATTTCTGTTCATATATCAGTACATGTA AAGCACAGTACTTCTGCCATAGAATCTACACAAATATAATGAATTGTTTGCAAATTAAGAATATAATAAT CACTCTACCATTTTGCATTCTATTTTCCAACTTCAATATAAAATGAACATTTTGGGTGCCTTATCTGGAA ATTATCAGTCCAAAATCCTTGCCCATATTAACGACATGTGTATGAACTCTCTGAATAATAGCAATCAGCC GGTTTATGTATTTGTTATTCACTTGACACATGTATCATTCAATACCGAATGAAAAGGGGAATTCCCATTT ACCTAACTCGCACTATTGATTAGCATTCAAATGAGATTGATTTTAACGCCAAGTGCACATAAGATTTGCC TGCCTATTAAGTGCCAATATCTGAATTTATACACCTATATACGGATCAAGCAGACATATCACGAAAAAAA TTATGTGAAATTTGCTTGTGCTATTTTAAATAAGAAACAAAAATGGTGCCTTTTTATGATTTTACTTGTT GAGGAAGGTGGACAAAAAGTTATCAGCCAGCCAGTGAAATAGATAGATTTATATACAATAGAGTATAGAG ATACATAAGAGAGTGTTGTCTATAATACTTAGAGAGTAATACCTAGAGATTTCTGTCTTTATATATGTGT GTGTGTTTTAAGATGTGTAAGGGTAGTAGTGTAGGAAATGTTCTATTGAAGAGTGCTATCGCTTGTTATC AGTTCTCTGTGCTTTGCTATTGGGTTCTTGGGGGTACAAGCCATGCCTGAAGCTGAAACATATCTTGAAC TATTTTATTTTTGTCTTGGGTTTTTCACTCTTCAAATGAGTGATCATGTTCTTTGTTTTCATCTCAATAT ATATTGATATTCCAAACTTTTGAAGAAAAAAAGACCCAGCAAAGTTGTTGCCAATTTAAAGATTGTAATA TTGTTATTCATACAAAAAGAAATAATGTAGATGCAGAAATTCTTCACATGCTTAGTGTGTATTAATTCAT AGCTTTCTCAATGAAAAGTTATTGAACCAAACTGCAAAATGTGAGTTCTCATCCTGAATCATGAAAAATC CCACAAAATTTACCTCCACTTTTGTTGTGGGGGTCGTGAATGCTTCAAGTGCCAATTATGTATTATTTTC TGTATTAGATATTATTTTTGATCGCCTCGGTCCCCACCTTGTTTGTGTTCTTTCCATCCCTCTATTGAAC TACATGATGTAGTCAACCTCGTAAGTTTGCACATTCAAATTCAATGATTTCAGCAACTTATCTGGTTGTG GGATTCTAGGAGTTGGGTGCTATGAGCTGTATTAGGGCTGTTTACTAATGTATTCAAATTTATGTAGGTT TCTTTCTAGAATCCTTGGTGACAAGTTATTCAATTCAACATTATGCATGAGAGCAACATTATTTGGATAC ATTAGTAAACTGGTCTATTCTTCAGAAATGTGTAATTTATGAAAATGTCTAAAGAAAGTGCTGAATTGAA AATGCTGTCAAGAGAATTTGTAAATGTTATGTGGGGCGAGCCTCTGACAAAGCAAAGGGTTGCTACAGAT TAATGGTTTCACCAAGAATAAGATGAAAGGCAGAGGGTGCTAGATCATGGATGAAAAAGCATTGCAACAT TAACGGTGCATTAGTATCTGGATGATTTCTCTTAAATTTCATGATACAATCCTGTCGTAAATTCATCTCA AAGCCCAAATTTCAAAAATTATAGCATGTTGTGAATAAATCAAAGGTTAAAACTGCCAAATACCAATCAG GCGATCTTTCGAGCAAACATTTGGCGCACGGATGCGACTTATGCTCCTCAGATTGATATTTGGCAGTTTT AACAACGAGCTTTAATTTTTGAAAATTAGAGTGGGCTTTAAGCTCGCACACTATAACAGATTTTATTTGA CTAGGAGAATTAATTGAACTAAAATTTTGGTTAATATTATTTTAATCAGGAATATAATGGTAATGCAGAT TTGACAATCTCAGTAAACTAGGATAATTGAATCATACAGTATAGATACGGTGTACATGCTCCTTAATGCC TAGATTTTGTAGACATTTTCTTGCCTGTATTCGAGGTAAATAAAATATTTGGAAATAAACCTTGCAATAT GGACGAATATGGAAGGCAGAATTAAAGGGAACTATTTTTGGGCGTATTACCGAGCTTTAATGTCCTGGGG TCGTTATGAGCTCTGTACAAAAACCTGCTGTAAATCAAATAAACGCTTTCAATGTTTTATTCTCTTCTTA TATGTAAAACGCAACATTACTGCTTCCTGTATATTTTGATTCTCCCTCCCCTTTATACAGCTTACATTCC GTTTAGGACAAGTGAGTCTAAGAACATGTATTTATAAAAAAAAGCTGTGACATATTTAATTTTCCCCAAC ATTGTATCTATGAATCTCTTTCTTGCACGTTTATTTGTGACATGTCAACACCTGTGTTTGAAAATATACT TTCACCTTATGACAAAGCACATGATCTTTTATCGTCTTCATTTTCAAACTTGTACACCTGAATGAATTAC GGTACCGAGGTCGTACATTTCCTATAATGGCTATATAGAAAATGCGTTCTTGATAAACGACTTCACATGG TACGTCATGTTTTGGTGGGGAATCTTGTAGATTAATTTTTTCATAATGTTTCAGTATAATCTTGATCTAT AAACCGGTAGCCATTACAGGAAATGTACGATCTCAGTAATGACCATGAGGGTATTAAACTTTGCCATCAA TGGTAAGTTACAATTTCCCATTAAACATTTTCCGCTAATTACGACTTTCCCTCATCAAAAAGTCTTTCCA TCAAAGGGCAGGAAAACATTTAATTTTTCAGAATACCTATAATTATTCTTTGGGGCAAGCTCTTTTTTTT GTTCTTTTCAAATTCTGTCATTTCAGACTGTAATCAGGCATGCATGATATATTAATTTTTTTCCTTTATT TCGGCCTCTATATTTCTGCAATATTTGCATTATATAAATTAATCTATCTAATCCTGAGAGGGTCATATAG TGGAGCCCAAGAGGGGTCATGTACTGGAGCTTGAGAGAGGCCTATGGAACAGTTTATACGTCATATTCTT ATAGACTGAAGGCAGTTCATGCATGCTGATATCCACCTTCTCAAACCCTTCTAAAAAACCATGCTGTATC AACTGAGCCATGCGGACGGTCAGATGAGTGTGCTCGTTTGTCGTAGTGAGCTCGTCCACTGGAGTCCAGG CCGCGTTGGTCAGCTCCGTGGTACAGATGTTGATGTCAAAGGTCAGAGGTTTAAGGTGTGTCACAACGTA GATGTCGGAGCGGCCAAAAGCACTGGGTACCTTGTGTTGCTGACGAAAAGCTAATACTCCCTTAAATTCT GTGACATAGACAAAGACAAATGGTCAGACAATTTTAC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds