Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041608699.1 PREDICTED: Lytechinus variegatus neuronal acetylcholine receptor subunit beta-4-like (LOC121415499), transcript variant X1, mRNA TGATCATAATGTTGGATGAGTTTGCGCCATGCAAGGCTGGATTCACTCTGCGGCCAGCAAGTAAGGACAT GCCGAAACACATCGACCAACGCAGATAGGGGTAGGACGGGTGCTACATGCAGCTTGATCATGAAATCCTT TCTAGTCACCATCATGATCCTTGCCTTTGCACAAGGATGCACATCATCTGAGGCCGAGGAGCGACTCTTT ACAAAACTATTCTACAAATATAACAGATTGATTAGACCAGTTGTCAATAACTCGGATGTTTTACCGGTCA ATTTTCAGTTAACAATGTCCCAACTTATCGATGTGGACGAAAAGAACCAAATTATGACAACGAACGTTTG GCTCAAACAGTTATGGGAAGATTATAAACTTCAGTGGGATCCAATGGAATACGACAACATCTCCATACTC CGAGTACCCTCCAAAATGATATGGACCCCTGATCTGGTCTTATACAACAACGCTGACGGCAACTACGAAG TGACACTTATGGCCAAAGCACTTGTGTACAATACCGGCACTGTATATTGGCTCCCACCTGCTATCTACAA AAGCTCTTGCAAGATCAACGTCAGATATTTTCCCTTCGACGAACAGTACTGCCCGATGAAATTCGGCTCA TGGACTTACGACGGAAGCTTGATAGACCTTGTTCCTTCGAGCAACGACGTCGATTTGGAAGACTATTGGC AGAGCGGCGAGTGGGACATCATTGAAACACCGGCAAACAAAAACACACTCAAGTATCCGTGCTGCGATGA GATCTACACAGATATTACCTTCACGCTTCATATCCGCAGAAAGCCACTCTTCTACACGGTGAACCTTATC CTTCCTTGCGTGCTCATTTCCTTCCTCACTGTTCTTGTGTTCTATCTACCCTCAGACTCAGGAGAAAAGA TTACACTTTGTATATCAGTGCTTCTGGCCTTGACTGTGTTTCTCTTGCTTATTGCAGAGATTATTCCCCC AACATCGCTGCTCATCCCCCTCATTGGTCGCTACCTTCTTTTCACCATGGTCCTCGTTACACTATCCATT GTCATTACCGTTATTGTTCTGAACATTCACTATAGAGCACCCAGCACGCATACGATGCGCCCGTGGGTGC GTAAAGTCTTCCTCGAAGTTTTGCCGCCGTTACTCTACATGAAGAGGCCCAAGAGGCACTTACATGGAGA AAACCCTTCCAAGGAGAAGGACCTTAATTATTTTGAACTCAAGGAGGTGATGCACAAAGACGGGGAGAAT CCCCACGGTAACGGGCGGGATATCTTTGACAACCTCCACCCTAGTTTCAAACTCCGGACTCTATCTGACG ATGTCGGTAATCCGAACATCGATACGCCGTCGATGTCGAAGGCAGGAGGGAGATACTCCAAGGAGTTCAA ACAGGCTGTTGATGGAGTCAAGTTCATTGCTCAGCATCTCAAGAACGAGGATGAGTTTAATTCTGTAACA GAAGATTGGAAATATGTTGCCATGGTCATCGACCGGATATTTCTCTGGATTTTTTTAATTTGCGTAATTT GCGGGACATCCGGAATCATCTTATCGGCGCCGCTCATTTTCGAACCAGTGGTGACACAGATAGAAAGGGA TGCAGCTGCGGCAACAGACCCCCCGACCGCATCTCCTACCACCGATCTCCCAATTTCAGAATAACTCAAG GTGCGTGTGACCGTCTTTTATAAAAAAAACAAAACTAATGCAACTTTGGCCGCCGCAATGCGAGGAGATG GCGAATGATGGCTGATGGCTCGTTATCCATGCAATACAATGACAGCCGTTCTACTGACCTCATTGTTGAA AAGGACGACGATGACGTAACATACAGTAAGCAGTGAGTGGTGATCATTCTCGTAATGGAGCATTGGCAAT CGGATGGCTGAATTGCTTGACGACGTCCGTAGGTAAACGTTCTTCAGACCACGTCGTATGGACTATGGAT ACGTAGGATCAGTTACTTCTGAATATTCCCCACGTCATGCAAGGTGTGGTGTTTTAGACCCAGGACATGT AGGAAGCACTGACCTAAACCAAAGTAGTCTTTAATTCAATAATGCAGGTGAAAAAAATGGATTACTGATA ACACTCGAAGTAGATGATGAGTAGAGTCATGCTTACATTTATGCAGTTGAGACAAGTGTTCGAATCCAAT ACATATTGTGGCAAAATGTATGCTGTAATGAAATCGCGACCTAAATCGTTGGAAGGCTTTAAATTGTGTG AAGTTTCTGAGTAAATCCATTCTAAAAGGAAATAGCTCAGGTACTATGCATAAAAATAGACACAACAAAT GTTTTTACCTTTGATACTTGGTTCGTTTCTGTAGATGCATTTAGGTCTATCATGCTGATAAACCAATATC TGGTTACTAACAGATTTTAGCCTCACTATCAATAATATGATTTTTTGCAAGTATAATTATATATTATCTT CGAGCTTACCTCAACGTGTATTGGAGTTGAGTAATGTTTTGACAAGAAAGAATGATTCTATATTAATATA TAATCATAGAATCATTATTCCTTGTTTAACATTACCTAATTCCAATTTATACATGTTACGGTATCCTCGA AAAAATCATTGCCTCGTAACCACCAGCGACCAATTGGTGTCACTGATAACCCTATATGCCACTGGCCCCC AGAACCAACCTGACATCAATCGCAGGTTCATGTGTCATAATTATCTATATTGCTTTCAACCAGTCTGAAC CGCCCTCCTCCTGCTTGTGTCCTTTCTCAGAACGATTTCTTTAAAAATCATGTAGGTTACCATGGTTACA CTAGAGATGGGAACGAACGTGCTATCGTCTGAAAGATACGTCTACGGTACAGGCGTTACGCTTGCTGGGG TCGATCCCTTGATGCATGAGCTAATACCGACACAGCAACGGCAGTTTGCTTTGTACTTGACGACTTATAG GGTCAAGATCATGTTATGTAATAAAATGAACAAAATTGATAATTTGTATATTTTATAATCGACATGATAA TTATATATCAACATTTGTTTGACGCTTTTTGAATGTGAATATTTCATGTATATGTGGTCTTGTTTTGAGT TAAAAAAATAACATTTGTTTTTTATATTTAGCTGAAAACATCAAATCTATACGAATTTCAATACTAATTA AATGCGATAAGGGTAATTTGACTGTAGATATCACAGAGTCTATCTCTTAACGCTGGCGTTGGACTTTATT GTAGCGGTACAGATTCTTTTTAAATGTTATCTCTCTTTGTAAGCAAAGTGATTATTGATTATATTCAACA CTCTTATTTTTAATACGAATTTTTAATCATGATATACTGTACGTATTCAGCATGCATGTAAAGCATTAAG CATGATAGGTGTGAATTTTGATTACGACATTCTAAAATTGTAAGCAATATGACAATTTTGTTCGGAAGAA GACGAGTACGACTTAACGAAAATCGCTTATTCTGGACCTTCCAAACTTTTGTTAACTTTCTGACTTCACG GCGGACCAGTGGTTTTTTTTTCTCTGTATTGAAGGGGAGCAATATTAAAAAAGTAAAGTTGTTTCCAAGT ATTTGATATGGAAAAATGAGACCAAGTGATTATTTTGTTTAATTTTTGTAGGATTTCTTTTTATTTAAGA AAAAAACGGTCAACGGTCATAGTTAATGGCATATAATAGATGGCATCTAGTGCTTTCTTTAAAACGTAGT CGGATTAGTTTTTTTTTATATTCTCTCACACTGTTTGACGACCTAGGTATTTTCCGAAGCGCTCTTATTT AGAATGTAATACAATTCTTTATGACGTATATGTGATCACGAAGGAGCATTATAGACCTATGAAATCTTTT ATCTTTTTAGCAGTGTCACATCTACATTATATATCATTATGCAATAACTGTTCTTTATTAGATATAGGCA TATTTCTGCTCGGTATATTTCTATGTATAATACTGGTAATCTCTTTTGTCTGCGGGATACACGACGGCTA ATATAATTTCAATACACCATTCTAATGCAAAACTTAAAACACGTAGTACCGTACTGTTAGTCAACAAAGT CAGGAACCTCATTTATGATTTCAAAATCATAATTATTAAGGTTTGTAATATAAATGTGTACATCTATCTG TCTTTCTATTTTGATTTATTGTTTCTTTTATAACTATCAGAAGATTTTCCTTGCTTTGATTTCTAGAACT CTGAATTCACAGGATCTAATCAAAGGAAAGCTATTTATTTTATCTGTTTCTTCAGATTAAAGATCTACAT AAATTTAAGAGAACTATTCAAACTGTCGAATATTGGAATTTCCTCTTCCAAGTTGTATCCTACATAATGA CAGAATAGGAAAGGTCCCCTTTAAGCCAAATCCTGGTGTTTGAAGTATTGTATGTTTGTATAGAAATATC ATTTTCTTTCTTTTGCTCCCAAAAAGGGAGAAAGAAAAAATACACAAAAAGAAATGTATTTATAACGGTT AGAACACTATCAGGTATTCTTTTCAGTGATCATTTTGCATTCGTGAAATAGATCTACGTGAGTCCATGAT AAGTTGAAATTAAATCGATTTATTTTGATTTACTAAAACCCTAGTCACATGACCAAAACTGACATCAGGC CAACATGTCACCCATGAAATAGGGTAATGCCATTTTGTAACACTCGGGCATTGCTCTGGATCTCTAAAAA TGATTGCGATGATTAATTTGTTTACATGAATATTAATGAAAAATTTATGCAAGTAACCAAAACCCCTTTC GGCAATTGAAATTTGAAAATTAATCCCAATCCTTTTTTATAATGGCGCGTTGGGGCATTTCGCATTTGCG TTGCTACAAAAGTCCAACCGTGCTGGTAGAATCAGGAGCAACTATAACCAATCAGAAGCGAGCATTTTGG ATTTACAATGTGCTTCTACGAAGTGTGTTTGATTACAATGTTTTGTGGCATTGGTTTCGGTTTGAGCAGT GAGAATGAGTGCTGTAGGGCCTATCTTCTAAGAATGGGGCTCGCCTGGTCTTTGCTCATAGATACGACAT GGCGAGTTCCTTTTTTCTGGCAAAATCAGAATAGGAAAAAATATACCATTCTATTACCCGACTATTTTCT CATTAATTTATTTGTTTATTAAAAAATCACCCTTATTGGAGATTATATAGTTGCACACTGATATATTCCC ATTCTAATTATTAGGAATCTCTTTCAAACAGTACAAGTAAGTAAGAATTTGATTTCGAAATAAAAATCTT AAGTCAAATTGCATAATGTTGGGCCAGACCGAGATTCAAATAAAGATGTTTTAAATAGTAATGGCCAACT TGACTAGTCTCTGTGAATATAGGGCACTGTGTAGATCATCCGCGGCTGGACCTGCGTTATACATACTACG TAATCTCATGCATGATCTTTATTAAGTTATTATTACACTGGTACAAGGCAATCATTGATGAGAACCATCG ATATAAAAACAAAACTGGATAGAGCAACGACGCGCTCTTTTAAGGTCACCGGAAGCACTTAAAAGTAATC CAAAAGGTCAAGCGCGCACTCGGTTCCACACTTTTTCTCTTGCGTGGGCGTGTATATGGCTCCATTATAC TGTCAATGTGCCATGGAATACTTTTCCTGTAGCTTCAAGCTCTATCCATTTTTTTTATCAATGGGTATAC GGGAATCCTTGATTCGACCTTTTTGCTGTTCGTGCTGTCCAAAGTCGTCAAAGAGGGCGTGCCTCTTTTT CATTTGAATTGCGTGTACATTGAAATATAGACTCTATCGTAGAGGTGATAAAATATTATTATGATTATAT TTAAAAGAAATACCTAACTTTGACTATCCCGCAGCTAGTGCTGGATGCTAATATGACTTGCTGTGATCTT AAATATCAAATTTATATGTATTCATCTATTTGCATATTTTCATTTCATTTATGCTCGAAAAATTGGGCAG TCTTGTTTTCTTTCCTTTCTTTTCTACATGTCTACAATAAGCATAAAACTTATTGGTCTTCAATTAACCA AATCGTTTGCGATTACAAGCGATACTGTACAGCTTGATAATCGATACTATGATTATCATTGTATATTTAA ATGTATTTCCACTTCCATCCGTTTTGTTGGAGATTGATTAAATATACGTTTTGACACAATACAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds