Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041627850.1 PREDICTED: Lytechinus variegatus coiled-coil domain-containing protein 178-like (LOC121430545), transcript variant X2, mRNA TAAGCAAGGTAAGCAAAATGTCTCAAAATTAAAGACAGCCAAAGCAGAATATTCATCATTCAGTGGACAA AGTAAGGCAAAATAATCAAAATTTCAACGGTGTTATAAGCCAGATGAGGGAACTGGGAAATCAGCACCCA AAGTGAAAGTGATGGAGTCATTAAATTAGGACTGAAATCTAGTTGTGAAAAAAGATAAACAATGAGCACT CCAGAGAAACAGTCAAGTGTGGAAATCACATTGGAGGATGAACACCACAAGAGGGCGCCAATCTCTCTAT CGAGTACAAAGGATGAGAAGCCTAAAGCGTTTCTGACCCAATCAAGGACTGGGTCTGGATCTAAGTATAG TCAATCTGAAACCTACAGTATCGGATTGTCAACCACCTTAGATGGCAAGGTACAGAACAGAGTAGGACTG GCACCAAATAAACCTGGCTATGACAGATCTGGCGCAGGAGGTCGTTCGGACAGCGCAGAAGGGGATTCTG GGATTGATGAGGAGAGTCCCAGATTCAATCAACAAGAAGCATTAGATAAGGTCTACCCTCTCCCAGATGG CTGGCCACGTCTCCAGGATAAACTCTTTACGCGGAGGGCGCTTTTCTTCCGCAAGCCGATGTCGCCGAGC ATTGCCAAAGCTGCTGAGCAGCTGCGGCTCCTGCAGGATCGCATCGAGGCCTGGAGCCGAGAGGTGGAGC TAGATATACTCAGCAGGAGATCATCTATGGTCTCGGCTGTAAGTGTAAAGCCTCCAGCAGGACAACCATC TTCAAGGGGTGCAGGAGATGTAAGCACAAGACAGACACCGGCAGAGGGCAAAGTCCGCAAGCAGCTTCGG TTCGCAACTAACACTGATCGTACAGGGACCAGTATGTCATCCATGACGTCCAGTCACTATACTACCCCAG CCCCTCCTCATGGTACACCGGGCGGTGCATCTACAGCTGATCTCACTGTGCAAGGCATAGGAACAGTTAT CTCAGATTTGGAGAGCTTAGCGGACATTCCTGAGGAGTCGGTCCCTCACCTCGGGGCGGAGGAGGTCATC GATGAGGTCGTGACCTTGTTAGGTCGGCTGGAGACGGACCGAGGAGATACAGAGGATTTGTTTAAGAAGG AGCAGGTTCGTGTGGGATGGCTCCAAGGAAAAATTGATCGGATCTCACAGAAAAGAATGTATGAGCTGCC AAGGGTTATTCAACAAGAGCATGAGGCTTGTGCTACAGATATAGCCGAGCTGAAGTGGCATAATGCCTAT AGAGGGCGCCAAAAGGACCGCATCCAGAATCAAGTAGAGAATGCAGAGATGTTAAATTCAAGATTGAAGG AGGATATTGCTTTTGTAGAAAAGCATTGCCCTCTGGTAGAGGAGAAGTTAGAGCTAGAGAGAGGAGCTAT GAAGAGGATAGATGAAGCACAAGAACAAACTGAAGCAGAGCTGAACAAGACCAATGAGAAGCTGAAGCGA ACAGAGAACAAGTCTGCTGAAGCTCTTGGGAAAGCAGATAAAGAAAGGGAACATATCAAGAAAGAATTAG AATCAGTCAGAGAGACTTTAGAAGAAATTAACCATGACTTAGAAGCTGCCAAGGTTTTATTCCAATCGTA TACCAGTCAATGTTCTGACCTGAGAGACAAGATTAAAACCGCAGAGCATGAGAAGGTCTTGCTTCATACA AGAGAAGAGAACTCGAGGAAAGCTGAAAAGCTGCAGGCTGTGAAGATCAAACAAGTCCAGGATCGCATCA TTGAGGCCGAGTTTGAGCATCGTAAGCTAGCTGATAATAGCGTCTCACTCAGTACTACCATTGAAACACT GAGGAAAGATCACAAGGAGTTGGTAGCACGTCAAGAAGAGTTAGCTAAAGACCTTTTAGCAACGTTGAGA TCAAAGGAAGAAGGATGTAGAGAGATGACTATGACTCTTGATGATATGGATTCTAAGATCAGAAAATGTA AGAAACAGAAGACATCCGATGCTAAGAACACAGAGCGTATCAAGCGTGAGATGGGGAAGGTTGAGACACA GCTAGCGGTAGTGGATGAAGAATATCAGAAGATAAAGGTCATCAATGTAGCTGTTAGGAATAAACTCACA GGAGAGGAAGATAAGGCTAGAGCAATGGAAGACTCATTACAGAGTACGGTGGACAGTCTAAAAAAACAAC TGAGAGAAGAGACTCACAACAGGACAGTCCTACAAGCTCGTATTACAGCGGATACTACGGATCTAGCTAA GAGACAGGTTGAAGCGAAGAAGAAGAAAGCAAAGGTGACCCAGAAGGCTAATGAGATGGATGAAATCGTT GCCAGGGTTCTTGCCGAAACTAAGATCTTGAGGGAAAAGAGGGCCAGCAGACAAAAGGCAATCAACAAGA TTCAAGAAAGAATGGAAAGCATGAAACAAGAGGAAGAAGAACTCAAAGCTCAAACAATCAACAAAAAAGC AGAATTGGAACCTAAATTGAAGAACCTACTGGAGGAAATATTAAATCGTCAACGACGCTTGGATCACATG GCCTACAGGACAGACCTGATCAACAAAAAGTTAGCTGAAATGGCTCAGAGTGAAGGATTCATGGATAGAG TCATCAAGAACACAAGCGAAGAGATTGAAGAAATGAGTGCGGATGTAGAAGAGATGACCATTCAGCTTGA GACCGGTCAGAAGCAGCAGAAAGAGCTTCAGATGTCATTAGATCAGGTGACCGGTAGAATGGGAGATAGA GATACCACCCATTTAGAACACATGGCAGCTAGGAGAGTTATACTAGAAGATCTAGTGGCTCAGCTAAGGG CAGGTCTAGACACCAATGGAACCTTGGCCCATGAATACAGAGAACTCCAACAACACTACTACAAGATCAA AGAAGAGAGTATGAACTTATTAGAGAAGAGAACAGGTCTGGAGATGAGCCTCAAGGATCACAGACAGCTG AACAGTCTTCAGATCCGACTCCACCATGCCCTCTCTCATTATTTCTTCATCCGAGGGTTGTACAATCATA ACGAGCTTGCAAGGTTTGAAGAGATGTCTGCTGAGAATGAGATGAAGATTGGAGAACTTCAAGAAGATAT GATAGCAGCCATACAAACCATCAGTGGCTTCTTGAATGAACAGGTTGATGGTACAGCAGCTAGACTAGTA ACAGCTGCAGCTAGCACAGTTCTTATGGACGGCACTGAGAAGGGTCTCGGTGTGACTCCAGAGGGCGCCT TAACAGGTCCTATGACGAGAGCTGGTAGCATGGGAGATAATCTTAAGATGCCATTGCCTAAGATAATGAA GACTCCTGAAGCGATTAAGACGAACTGATCATCCAGGGGCTGGTTTCATAAAACTCTTTGTAAAGTTACA AACAACTTTAGGTGTGACTGGGATATGAAGCACCAAAATCGTTAGTCAAACGTTTCTATTTTCTTTAGTT TTGACTGTTGGTGATGGAGATTTTATTCTAATAATCTCATTAAAATGTAAAATATCATTCTCTGCCTCAG CGATATGTGTTGACAGTGTTTTACATCAGCGTTTTTCAACTTATGTCCCACCACCATTTTGACCTGTTCA CACGTGAATCTACCCAAGCCATGTCAAGTTACAAGCATAACAGCCCTTCGTACAAACTAGAAAACTAAGA AAGATCACTCTTTGAATAACACTCAAAATGGGGCTGGAGAAACATATTTTATAGAATTTTCCTGTTATTA GGTAATGTGAAAAATATAACAGAGAGACCGAGTGGCTTCACTACCTACTCCATAGAGTTTAACATCAGTG TATAGCAACTTTGGGGCAATTTCATAAAATCTTTTTTGTATGCCCCAACCCCCATTTTCTCCATATTGTT ATGTCAGTGCAAGAATACCCAGAATGCCATATTTTTGCGCATTGCATGCACTCATAAATGCCTTAGTAGC ACGCATAAGTGGTGTTTCTGCACCAATGTGTTGCACAAAAAATTTTTGCTTAGGGCGTTCTTGTATTAAC ACAACAATTTTTTATTCTTCACCCCATGAAATACCCATGCCATGTCAATTTAAGAGCGTTACAACCTTTC ATACAAACTAGGAAATTGAGGCATTGTTTCAGGAATGCTCCTTATATTAAGGGTTGGACAATCATATTTT AATAATGATAGTAATAATACACTTCATTTATATAGCACCTTTTCGTCAGATACAAAGCGCATAATTTTAT TATAACTTTAAAAATAACAGAAAGACATAGGGGCTTCAATACATACTCCAGTCATGCATAACTTCAAGAT AATTTATGAGCCTGTTCCTTTAAAATTCATACTCCTAATATGATGTTGCCCTTTTGATAATAAGAAAGGG GCCTGTGGTGATATGCTGCAGGGACTATTCTTCAGATTATATAGTAATTCCTACCTTTCACTCTATTTTA AGTTTCAGAAAACATCTTCTTTCTTTGTAAATAAAGTATTCTTAGTTTTCATCAGTTTATCCCTGCTTCT GACCTTTCCTTCTTTCCTGGATTTCTCCCTCCAGTGCTTTTGGAGATTATTCCTATGAAGTCAGTAGTAT AAATCCAATGTTAATATATCATCCAGGGGTTAAAGCGGAATACTTTGATTATCATAGTAGAAACAAGGTA GATAGTTGTGGCTACATTTAGGTTCTGAACCTAAAGCAACAACTTCCAAGCGACACATGAATTTTATAGA TGAAATATAAGGCTTGAAAATATGACCCAAATTTACAAAGAATTATCAAAAAGATTTTTTTTTAAATATT AGAGATTGCTTGTCCCATTACAAAAAGCTTTGCAATTAATCATTGTACACATTCCTATATGATTGACTGC ACTGACCACAATGCAGAATTAATCACTAAATCAATTATATGATCAATCATTAAATTTTGTCATGGAGTCA GATGAATAGATGTCTTACAAGAAGCACATTGTCAGAAATATTTATCTCATAAAGCTTGTACATACAATAT TAAAACTCTGACTATTGTCTGTTCTCATGAGAGTTATATTTTACCAGGTCTTTCATTAAAAAAGTGGTAT TATATGATTCATATGTTATCAAATCTATTCATTTGTCAAAGTGAAAATAATATTAAGGGCTTAAAAACAT TTGTATTAAACACTGTATAAATGTTTGGAAATAGTTATTGTTAATCATCATTTGTAAACTTGTGATCAGT TGCAATTTGTGGAATATTGTCAAGAGGATAATCTATTAGAGAGAACGGATTGAATTATCTTTTTGATTAG TAAAAATAATGGGATGTTGACATGAATTCTATGTTGCCTTCATTTTCAATGCAGCTGTCTAGTTGATCAA TTTGATGTAGTGCCTCTTAAACTCTGCTCTTGAAAATGACTTCTGAACAAAACGTTGCCTTATATCTCTT TATTGACTTGTATTCACTCTTCTGCAATAATCTGCAACAAATTTTTGATTAAAACAAGGTAGAAAATGTC ACTCCTCAATAAATTGGCCAATTTAAATTGTGAGATTTTGGTCAAGTTTGAAAAAAAATCTGAGCTTTAA AATATGTAGTTTGTCAAAATTGATTGACAAAATGTCTCTAGCAGTCTGGAAAAAATTATCTCAAAGGAAC TCTTACATCGTTTTTTCTTTTAATTCAATTTCAAGTATGTGAATTATTACTCTGTACAATGTCTAGTGGA GATCTCTGTGGTGAAATTTCAGATCTTTGTGAATATACATGCATACCTAATTTAGTAGTTCTATATCTAT TCTTGCCAATGTACAGTAAAAATGTGTGAATGCATGTATTCTTGTAGTGTTTCTTGATCATTCATGTGTA TAGAAAACAGAATTGTGCAAATATTTATTGCTGACGAGATGATTTCTTCTTGTGAGAATAACCTCTTCTG AGAGCATAGAATTTATCCATTTTGTAATCACAAGGAGCTTACATGTGTGAAATACATTGTATATGTATTT TGATATATTTTCTTCAAGTGAGAAAATATAATTCAACATACAGTGTGTCCCAGAAAAAAGATAATTCAGT GTATTTTTTGCTATCCTGATCATAAATTTTCTTCATGAAATAAACATGCATGAAAAAAAATATGCTTCTC TTCTGTTCATAATGCATGCATGACCAAGTTTTTTTATGGGACGCACTGCGGTTTGATAACTAACGATGAT AGTGAAAAATTATGTATGTTCTGAAACCAGTAGCATGATGAATATAATCAATCGTACAATTAATTGTAAC TCTAAACCTATGGTAATCCATGTATAAATAGTTACAATCAATTATAGCTATTGGTTGTACACTACCATGT AACAGGGTCCATTAGATGGAATTGATTGTAAACTATTCACCTGTATACGCTTTGTTGCGACTTGTACCAT TTAATTTAAAGGAGAAAATGTCTAATTTTGTGAACTTGAACAAATACTGGTTGCATTCCAAATTAACTTT TGTCATTGTAAAGTACAATATTTCTTGTCATCTTATATGCAGTCTTATGGAAATGTTTAGCTCTTCCAGG GCTCTGGAACACAAAGTTTAGCAATCAATCACTAAATGCCAATGACCAATCAAGATTGATGTTGCATGTG CATTTTGTACCAAATGCTGGACAGGAACCAATCAGAATGGTTCTTTCATATTTTTAATCTGTGTTACAGG GCCAGGACCCTTAGTGATTGATTGCGGGGCTGCTTTGTAACCATTGCAATTATTTGTGTTTCAGGGCCCG CTTCTCAATCCGATCTATGCATTCTGTGTATGTGAGATTTCAATATGCAATAAATAATTATCTTAGAAGT GA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds