Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041596600.1 PREDICTED: Lytechinus variegatus uncharacterized LOC121405694 (LOC121405694), transcript variant X2, mRNA TCACGCATATGGCAACGCACATAAACAATAACACTGCATTGCATATTTGCAGCTTTTCACTTTTCTTTCC ACGCATGGGTGCCCTTGTACCTCGTGCAATCGATGGAGAAACAATTCCTAGTGAAAGAGACCGCACCATC ACTTGACCTTTATGTAAGTGCGTTTCACGCGAAAGTTTAAAACTAGCAATTGAATTGGAAAAAAATTGTC TTCTGTTCTGAAGTCGGAAGATCGAAGACGACGAGCCTGTCCCTGTTCGCCACCGACCGCCACGCCAGTT CGCCCGGTACGGCACGAGCACCTGTGCTGTGGCTGCATCCTGCCCTTGAGTTGTTGCCCTGGCCCTGCCC TTCTCCCTGGACCCTGAGCCTGTTTAGTAGCCGCTCAGTCAGAAGAAATGAGTGATTATCTTGTCAGCTT TTGATCTTTCACAGTTTCAGCTCAGAACATTTTAAAGTTGACTAGGCCTAAGTAAGACTTTCAGCCAGGT TTTATTGGAAGAATTGTCCAGGTCTGGGGCCAGTCACCATGGCTCCAATACACCTAGTTCAAACCTTTGC ATCTCAAACGATGTTTGGGGATATCGATGCCAAAAATGTGACTTTCATCATCGATACTTCAGGAAGCATG TACCCCTACCTTCCTGCCGTCAAAGATCACCTGAATGAGGTCCTCTTAGCGAGGGCGCATCGAGAGAAAG ACTCCATGTTCAATGTGATCGAGTTTGCATCGTCCGTGACACCATGGGCTGATCGGATGGTACGCTGCAC ACCACCGACGGTCAAGGTTGCCAGTGAGTGGGTCAATAAGCTTTCCTGCTCCGATGGCACGAACACTCTG GATGCCCTCACAGTGGCATTCTCTGACCCTGTTTGTGAGGCTGTTTACCTTGTCTCGGATGGACTTCCTG ACCAGCAGCCGAGGGAGATCCAAAAGCAAGTTGCACTGGTCAGCGAAGGCCGCCCAATTCATGCCATCTA CCTCACTGGACTGCACACGGAAGTAGCCGCACAGGAGTTCCTTGAGAGCCTGGCAGCTCAAACCCTTGGT ACTTTCCATGTCATCAGCATGACCAGACATGGTGCCATTGAGCGAGTCGAAGCGGTTGTGACGTCAGACC ATAGTCCCCTCAGAATACAGAAGGCCATGTATAGGAAGCAGCGGGAAACAGATATACCTTTGACGACCCT CGATAACCCACCAATCGCAGAAGAAACAACGTATTCCGTTCAAGGTGGAGTTCCAGCCACAAGCATCAAA ACAACTCTAGATAACCCTCCACAAAGTGCCACAATAACTTATAAAACTGAAGATATTGAGAAACCGGTAA AGTACTGCAGCGTGACAACCTCTTTGGACCACAATCCTGTTCCAGAAACAGTTATCGTCAGGGAGTCTTT GGCACCGAGAACTGTTGTTCAGATCCCTGCAGCAACCGCATGGGAGACCGTCAGAACTGAGCCTGCAGTA AATCGGATCATCTCAGTCCCACCTATAAGCTCTGTTGAACTGTTGGAGGGGATGAAGGTTTTAGCAAGAA GAGAGAAAGATGGCTATTACTGTCCTGGTACAATCAGAGAAAGGCTATCGGCAATGCGCTCCTTCTTGGT GTTCTTTGACAAGGATCCCTCGGGAGGGAAATGTCAGCGTCTCCTGCAGGAGACTTCAATCTATGATATC AAGGCGTACAACGATGCCATGCGGCACCCAGTCGTTCCTGGAGACAAGGTCTTGGCTCCGTGGGAGAAAG CAGGATACCGCTTTGCTCCTGGTATAGTTCTTGACGGCATAGAGGGACGGTCCACCGGATGTAATGCCGA TTCGAGTAATCTGGTAGTAAGTTTCTTCAGTGGTAAGACTGCCAAGGTACCAAAACAAACAGCAATTTGG ATACCCCACAGCGAATACGAGCGACACCGAATCGAAATCCAAATGCCGCTAACGGCCCGGCACTACGTCG TCAACGACCCAAGCTATGAGCGCTCCATCAGCGGTTACACCGTACCCAGCACGCTTCATGAAGATGGAGC TATGGTTGGGTTACCGGTCCTTCAGAAGGGGCGTGTCTACGTCCCCATGGTGATGACAGCGTCTGAGGTT CGGGACTATGGGAGGACTGGTGGCAGCGTCCGGGAGAGCGCGGTGAAAAGCGAGGACATGCATGCGCTGA TCCCTGGGACGGGAATGACCCGGCAGGAGCTGAACGTCAAGGTCATGAAGCAGCTCATGGACAATAAGAT GATGGGGAGTGGCATCCTTAAAGAGGGGGGCGACGCCCACGCCAGCGCCAAGTCCCCGAAGACCTCAACC CTGCAGAAGAGTGTGTCTTTCAACGATGACAGCTTTGGGTTGGACAGCGGGATCAGCTCCATCAAGACTG AACAGGATTTGGAAGAGTTTAAAACGGAAGAGGAGAAACTGGAGAGGGAGGTGGAGGAAATGAAGCAGAA GATTGAAGAATCAAAACGAGAGATTTCTTCCTTGATAGATGCAGGGATTCAGACAATGTCCCTCAGAGAC ACATCCGTGGGAACAGACTCCTCGCTGCTCTACCGTAAAGGGATGCGACGACCGAAGTCCGCCAAGGCTG AGGTTGGCTCCAGACCGCAGTGGAAGTATTGGAGGCGAATGCAGCAGCCTCGAAGCACGCATCAGGAGCT GGTCGGTCCATTCCGAGACATGACGTTGGAAGCATCTAAGGATGCTAAGCTACACTCATCTCCTCAGTCG TCGTATGTCTTTGAAGATAAAGATGTCTACGCTCCCGTGAATAAATCATCCATGTTTACACCGGTTGATG ATGACCACTCACCTGTCCGGACCGACCGCGCCCAGGTGGAGTGGGAGATGCGGAGGCCACGCCCTCGCAC AGCTCACGTTGGCCCCTTCCGTGATACCGCCCTCGAGGCTCCGATGGAAGCCAAGCTGCAGCCGGCATAC CATGAAGATCAGGGTCACTTCAATAGATCAGCAGTCTTTACTCCGGTGAACCACTCCCAGGTGCGGAGCG ACAGGGCCATGATTGAATGGGAGAATAAACAGCCCCGCCCCCCACCACCCCAGGCCCAGCGACAGAAACC GGGAAAAACTGTTGCCGATGCTGTCGGAACAAGGGACCAGATACGGGAAGCAAAAGAGAAGAGTTATATC GAGTTCCGACGGATGCAGACTGTCAAAAGAGAGTATACCTGGTATATGAAAGGCCAACAAGAAAATAAAA TGAGGGAAGCCAGGGATGAACGATGCAGTACTCACACATGTAGCTTTGAAAAATCCTTGACAATAAACAC GGAAGCAAGCATGTACCAACAGTACGCAGCTGACGTGACCCGGCGCGATGTCCAACGTCAAATGGACAGT GAGGCCAAGATGGAGCAGGTTCAAGCCGCAAAGAGTGCAGTTAGTGGGACTATTTCGAAACGTCAGAAGG AGTTGGCGGTACAGAACGACTCGCGAGAGCAGAAGAGGATCGATGCATTGAGGGCCAGGAACGAGAAGAG AATGGACGTTCAGAGACAAAAAGACCAAGATTTACGGGATGCGATTCGGCATAAAGAGGAGGTTAGACTT CAGCGACAGGAAGAGCGTTCCCAGCAGCACGTTGAGCGACTGTGCGAGCGCCGCGAGCAGGAGGCCGCAC GAGACCTGCAGATGCGCAACAAAGAGTTGAGCAGGAGGTCGCACTTTCGCAACATCGAGCGGCAGAACCA AGAGCGCAAGGATATCAGGATCGCCATGAAGGAGCAACGCAACGAGGAATTCCGCTCGCAGGTTCTACCG TAAGGAATTACCATTGCACAATAAAACGTAATATTCAATGTTTATATCAAGTTGGGTAGCCTGGTTGTGC AAAGATCTAAAGCCCCCATCACACTTATTAGGAATCAGCAGGAATCAAGCAGAAGCTGGAACGAAAAAAT ATTTTAAACATCTAGAAATTTTTGGGAGGAACTTTAATATGAATTCACCAAACTGGAGTTGAAATTCAGT ATATTGACCAGGTGAATCATCATATACTAGTAAAAATGAACCGCAATGGAGTCAGATTGATAATTCGTGC TACATTCTTGGACATTCTCGGCGCATTCTAAATATTCTGACTGCATTCTGAGTGCATTCGAAATATTTTT GTCATTTCTTTTGGCTGTCCCGAAGATTTTGGTCATGTTCAAAACATTTGAGGGGTATTTTCGAACGGTG TTCGAAGTAGATTTAAATGACCAACTGGTGGTCGAACAATAGTCCTTTCATTCCGGCCAATTCTGCTTAA TTCGGAATAAGTGCGATGGAGGCTTTAATAAATGACCATGGCCTGCAGGCCATCTTTTCCGAACTCGCCC TGAAAACCAATTACAAATTTGAATCCTGACCAAATCTTGAAACATTTTGCAGATGCCATTTTCTTGTAAA TGCATAAGGAAATGTATATTTCAGCAAATTAACGTTGACAACTCCTTTGAGATGAAAATTATGTGGACAT AGTTGCTGCCTTTCATGAAATCTAAGCGATGAATCAAATTTGTTTTTATGGATAAGGTGTGATTGTGCCA AGAAAAATACTTATGTTTTGAGTATCTTGTTTGTGTTTGATTCATAATCCATTTGACTTCATGCCTGTTG TCATTCAAAATTTGAAGTATAAATGAAACATATTCTGCTAAGATCCACATTGTGTGAAAATCCTACATTT TTAAAATATATTTTTTTTATAATACTAACAGTGGGTGTCATTCTGGGGAGTGTTTCATGAAGGACTTGTC AGACGTTTTATCCGACTGTTGTAAAATTGCAACAGAATATTTGCAATTGATTGCAAATATTTTCTTGCAA AACTCATGGGGGGCGTTTTCATGAAATTTGTCAGCACTGACTAAACTGTCAGTGCTGACAATTTCACTGA AATCTTTGGGTTTGATTGGCTGAAAGGCACTAGCCTCTGACTATTACTATAGACATTGTCGAAGAAAGTC AGTTTGTCAGTGCTGACAACATTCATGAAACGGTCCCCTGAAGAAATACAAATTGAAATCGATTTAAATT TAAGTCTGATTTTAATGTACCACAATTCTTTCTTAGACTGGGTCCTGGTAACATGTCATAAAAATTGTAA ATAAACAATTATCACTGTTCCAGTCTACTTAAATTGAGATACTTCATTGGCTGATACCGAAATTGTCATA GAAATTTGATGAAACAAAATATGTGTCAGCAAGGAATGAGGAATCATCCAAAAGCAAACTCAGGACACGC TATCATTCCATATTTCAGGTTAAAACGATCACCTTGATTTTATATCCCTCTTTCATTTCCATCCTTTTCT ATACAAGCTTTAAAAGTTAAGAAGGTATGCGTAGTTGCAGGTTCAAAAGTATTTCTTGTACTAGGACAGT GTACATGTGCATCTGTGATTCTTTCATATAATTAAAAAGAGAAAGATAAATATAACTACATGTAGTTGTA GGCACAATCCAATTTTTATTACATGAGTGATTGATTGATTCTTATGCATATAAGTGTGTTTAAAGAATGT ATGCATGGATTTATGTCTGCACATGTACATTTGTATATTAGTTGCTTTGATAGTGAAGCCAAAACTAATC TGTTTCACCCAGTGGAATTGTAGACTGTACTTTTGTACACTGCGAACTCTTTGCCCCCCCCCCCCTGTGG CGCCGCCCTTACATGTATTTCAAGACGGTGGAATCATTATAAACATCTAAATCCCGTTTTATAAAACAGT TTACCGGCTATGGTATCATTACATATACCATTGGATCATTGATTTTGGTTAGCTACTGAACTCTTCAACA ATTACAAATTTACTGTATTGTATTCCTTTTATGTAATGAGACCCTAAGTCTTTTTTATGTATTTAACTGT CAACTATTTAAAAATATTTTACCTCCAGTATAGTACTCTACTGATTGGACAATGCTTGTGTTATATTTTT ATTGATTTTATGACTTTTAATATCTTTGAGTTATTAAAGTAATTAGTTTTGATTTGTACCAGGGCAAGGT TTTTGCTCATTCTTATAGATCTTCAAGCTTTCCAAGTCTATAAAATTTTGTTTTTATGTTAAAGTTAATC ATCAATATATAAACTACATAGAGCTTTCATAACGTTAATTATCTTCTATAATTAGCAAAGACTTAATAAT GACAATTGACATGAATTAGATATGTTTCATATCTATTTTAGTTTTGATGATGAAATGATTTTATGAAATA TTTTAATGAAATATTTGCAGATTCATTGTATATACATGTACAAAGAATATTTGTCTTCAAAAGCTTTAGA ATTATGCATATGTATATAATAGAAACTAATATTTTGATTAACATTTTAATAGACCTACGTGTATAAACTA TTTTACATGTATGTATAGAGAATAAATAAGTACTGATAAGAGAATAACATAAATGTTTTTATTTCTTATA GATAATAATCATGCTAAGAAGTTTATATGCAAGAAATATGGTATTATGATCCTACTCCATATACTAGTAG ATTGGCATTTGTTTGAAAAAAATTGACCTAAGGAATGGAAAATAAATTTGAGAGATTTAATCTCTAGGTA AATGTGATACATGTATCAACTATGATATCTTAAGGAAGGAGAAAAGTTATTAAGCATGGACTCTCTGCTA ACATTTGAAATGATCTGTGTACAAATGATCATGAGTGTGACAATTTTTCAAACATTGACTTGGCGTTTTT TTTTTTATAATCTATACATGTAATGTATAGAATGGTTATTGAATATGATTGATTAGTTTTATTTATTGAA ATGTGTAATAAAAAGATAAACTGCATATCTAATCTTTAAAAAAGTCTATATTATGTTTAATATAATCGAT ATTGTAAGGCACATTTTTTTGTGATGAGATTAGAATGGCTATTGAATATGATTGATAAGTTAACATCAAT GTACTGATATGTGATAAGATACATGTACGTATGTAGATACACTGCCTATAAAGCTCTATAAAAAGTCTAT AATATTGGTCAACTAGTAGCATAATCATGTACTGTAAATAGTAAATAGTTTACTTGAGTAAACTTGAGTG TAAACATGGACCAGCAAGTAAATTTGTTTGATACAGTATGTGTTGATATGTGATGTAAACAAAAATAGGA ATTAGATTCAGATAGATATACGTTTTGTTTCCTAGTACTGTATGTTGGATTAAATGCTGAATTGTGCATT CGTTTACATTGAGTTCTTTTCTTGTGTTGTCCTTACATTTTCTACACCTCCTTTAATTAAATCTTTGAAA TGACAAAAAATAAAAAAAAACAATTCAAAGTACACATCATTTTGTTGAGAAAGGTTTGCATTTAATCCCA ATGCAATACAATAATAATCAAAATTGAATATAAAAAATATATGGTTGAATTCTCACAGAATAATTTCACA GGATCATAATAAATTTTTACAAATCTCATAAATATTGAACATTGAATCATTGGATACAAACCGTCTGAGT ATAAATACACTTTACATGTAAATAACGGTGGTCTCTAGTTATAAAACATACAAAAATAATACAATGAACC CCCCCCCCATAGAGACAAAGAAGTTGGTCTTCAAAGGAACGGTTTTGAAATGTTATTTTCGGTGATGGGA CACCATATTAACAATTATAAGGTCTTTAAAGACGAGCTGCAGCTAACGCAAACCAGAATGTAATCAATAG TTTATTTTCCATATTTTCTAGTTGGATAAATAAGAAAAAGTGAGTTTTCATCAAATGTTAAACAAACTAG CTCTTTGACCCAAGTGACTATGATTGGACAAATGCATTTCCAATTTAGCTAATAACCAATACATGTATCA TTAAACATGTTAAAGGCACAAATACATGTACATCAAAATCGAATACTATCAATTTCCATTCTCTTTTCCC TACGACGTTAGGAATAAAATCATTAAATAAAAGTACTGATCTAAATTGTACATTACCATTATCAAATAGA TTATGTTATTATAAATATATACAGTACTCTAATTTTCACTAGCACTTCATTGTACATGCAGGTCTGAAGG CACACAAGTTCAAGAGTTGCTATAAATTGTTAGTCTTTGTTCAAGGCATATATATTTATATGTACTACTA TGTTTGTATAACTTAAATTATTATTGACTCTTATTAATAATGTATATCATCAAAAGCACTAATTGTAACA AAAACTTAATTCACGTTTTAAATGCGCCATGAGAATGACTAGGGGATACAAACCTTGTTTAAGGAAAAAG ATCAGTTTGTGTAATAAAAAATACAGAAATTGTGGAAAAAATACAGCTTTTGTAGAAATTTAATGTTTGA TCAAACTTCTGGTCCTAATATATTAACTATACTCTGAATCCTGTTTTACCACAAGAGTATTACCTGTTGC TACACATGTACTTGGTAGAGCCTCAGGCAAGCTTTTGGAATGTCAAGAACTGCCATTTTCTATGTCCATG TTTAT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds