Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030985375.1 PREDICTED: Strongylocentrotus purpuratus uncharacterized LOC582736 (LOC582736), mRNA TTCTTTTTTCTTTCACCAAATAGGTCTGATGCTGGCATCGCTCGTATCAGCATCGGAACACATCGCCAAA TTCAGTATGAAAGGCATGAGCGGGAGAGTCATTTTCACCGAGGATCCAAGTACAATGGGCGTTCACATCC AGGTCGATCCTCTCATCGGCCTTGAAGACGGCCAGGACTACGAATGGAGCATCCGAACTCTTCCAATGCT CTACGACCGCGAGGATAAGTGCGCCGAAGAGTACATCGGTCCCGTTTACAGGAACCTCACCGCTGCCATC GGGCGCCTTACCAACGTCACCACAGGGTCCATGTATGTAGATCCAATGCCGATGTTAGATGGCAATGATA ACATCAGTGGTCGCACTCTCGCCATCGAAGACGCGAATTCCGTCGTGTACTGTGCCTCTATCATTCCCTC AGATGAAGTCATAACAGCAGTAGCGCAGTTTGGGACGCCGCTTGCTGGAACCGTAACGTTTCGCCAACGC GCCGTTGCCGGTGCCGTTACGACTATCTTTGTAGATGTCTACGACGTAACAGAACCCATCATTGCGCAGG ACTATGACTGGCACATCAGTGACAACACGGGGATTACAAAAGACATGACCGTAGAAGAGTGGTGTACAGC AACCACCGCAGAAGCATATGCAGATTCTGGTGACCTGACTCCAAAATTTGGTAGCGTCAACGTCAAAACC GTCCTTCTTCGCCAAAGGTACTTTTTCATTGATACAGATATCACCTTGAACGGAGCCGAATCCATCCTGA ACAAATCCTTAGTATTCAGCCTTCCCGGGGATGCAGGAACCAGGCAAGCGTGCTCACCCATTCGCCTGGT AAAGTCAAAGACCGTTCGAGCAGAGTTCAGCCAGAATAACGTTACTGGAATCGTCACGTTCACCCAAGCT TCGCTGTGGGAATCGACCAATATCACAGTCGACCTGGAGAACCTGAGGCAGATGGCTGGCGGATACCATG TCCACAAGTTCCCAGTTCCAATGAGATATCTCACTTCAGATTTCCCTGGAAGTGCTGATAATGTAGCTGG ACATTTTAATCCGTACAACATCGACACAACAGCAGACCCCGACTACCCAAATGGGACCAACGACCAGTAT GAACTGGGTGACATCAGTGGCAAGTTCGGAAGCTTGGCAGGTCAGGACGACTTCAGTGGTACGTTTGAAG ATTGGAACATGCCTCTGTTTGGAGCAAACAGCATTGTAGGACGATCAGTCATTATTCACCTCGCCAGCTC CGAACGGTGGGCTTACGGACTCATCGAATACCCGGCCCCGGTTAGAACAGTGACGTCGGTGTTCACCTAT CCTCTGGTGGGCCAGATCACCTTCAGACAGGATGCAGAAGACCCTTACTCGGACACATCCGTTTTTGTGG ACCTGGCTCATAGCGACGGTGAGGATACGACTGTTGAACACGACTGGCACATCCACGTTGCTAAACTTGG TGATGATCACCTGGACCAGACGGGACGCTGCTCAAGTACCCTTGGTCACTTCAATCCATTCGCTGTAAAA CTCACTGAAGAGTATGCCACAGAGTGCGGTATCGACGTTACAAGACGGTGCGAGATTGGTGATTTCTCCA AGAAATACGGCAGGATCACAGTACCAGGGTCAGTGCGTACCCAGGTTGGGAAGTACTTCTTCACCGATGT ACAGCTTCCACTGTCTGGTGTATATACTGTGGCCGATCGAGCTGTTGTTGTCCACGTAAAGGACGGTGCT CCAGAGAGGCTTGGCTGTGGTGATACTCTCGATGTCTTCCAGGCAACAGCAACAGCTGAAATGTGGATCG GTGTTTCTGACTCTGGTACGGGTACCGTCACGACTCCCGTCACGGGTTCCGTTACCTTGACCCAGGACTC AGAATTTGATGATGTGACCATTACCGCCGATCTAGACGGCCTCAACGGCGTTGTAGCACCTTGGCACATC CACGTTCTCCCAGTGCCTTACTCCGATGCAAGCCCTTGCAGCCCCACAAGCACCCAGGGACATTACAACC CATTTGGAATTATTGGTTCACCACCTGCAGGAACCTTCGATTACTACGAAAATGGTGACCTGAGTGGCAA ATTTGGCTACTGGAATGACTTGCAGACGATCAGTACGACCTATTCCGACTCCAGTCTCTCCCTGTTCGGA TCGAGGAGTGTTTCAGGAAGGTCTGTCATTGTCCATCGGTCGGATGATGGCTCAAGGTACAGATGCTCTT CTCTGATGCCTGTACTCGGAGATGGAGACTTTAGGATTGAGGCTGGTGTTGATATCAGTAATTCAGATTT CACAGGATATTTACTTCTCGGCCAGACACATTTCAGCAATGGGCGTCTAGGCGATACTACGATATTAGCC AACTTTTCACCAGTCGATGTTTTAATAAGTGATGTTTACGACTGGACAATCAGGACCGATACAATCTCTT CGTCATCCTGCCCAAGTAGCAACAGTGTCTTCAACCCTAACACCGTAGCAACGGACGGGGATTACCCAAC TCAGTGTAGTATTGCGTCACAGCTTCGTTGTCAGGTCGGGGATTTGACTGGAAAAAATGGCAACTACAGC TCCTATCACAAGAGGGCGCTCTTAACAGATTCCAATCTGCCACTTTCAGGAACATCTGGAGTAATTGGTT TGCCACTCTATCTGGAGTCCAGTGATGGTAACATTGGATGTGCAACAATCCAACCCCTCCCGAGTACAGG CTTAGAAACGTCAATCACCTTCCCTCAGATGATAGACTTTGATGTATACTCCTTCAAGCTTTCGATGGCT AACGTTCTAACTGACGTAGAACCATGGCAGATTATTGCCCCACACTACCCTGTGAACAGTGAAACTCTTG AACGCTGTATGGATCTGCAGCTATGGATTATTGGTGAGAATGCTGAAGCAGCCTCAGCTGAACTCATACT GAAATCAGCTAACGATGAGCTCGGAATCTACTCCACGACAGATAGATGTAGAGGAGATGGTACTGGTGCT GCTGATCAAAGTTTGCCCCTCTCAGCCCTCACGGTCGTGTTCATCGCTGTCATCACATCTCTATGGCAAC ACGTTATGACGTCATAACTCCAAAACCTCATTAAAATTTAGGATATTTTCCACCTTATGTTTTTCTTTTA AATTTCGTAAGAAGGAGGTAGAGGTACTTAATTTTCAGATGCCACAACATACTGATAATCATTGATAGCT GTAAACAATATGATTGTGTAATTGTACAGGGAAATTATATTAAGAAACATTTATACTTCATCACTGCAAT GTTTATTGTAATGCATGATTTTTCATTTCATTCATGACAAGAAACATGTAATGTGGTTGAAAAAAAAAGA ACCTTGAGTTCTTTCAAGTAGTATAAACAAAGTTTATTTGGTGTAATTGTCCTTTCAAGTCTATTTTCTC CTTAAAATTTGAATTTGACTTACTTTATATTTTTCTTCTTTCCAATGGGACTCTGTTTCGTAAACTATTG GAACAATATAAGTAAAAGCTTATAATGAATTATATATTTTTGTTGCTTTACAATACACTTGATATCATAG AATATATATAACTGTACTAACTTCTTATTCATAGATATCTGGTAGGCACTCTCTGTGAAATAAAATGAAC CAGGGAATGAACTGGTTCCTAGAGATTGTTGTTATCATCGTTTCTAGGTTTACAGCATGATCAAAAGTGG AAGTTGTCTGTGTTCTTTTGCTTTGTTCCATGAAGTGGGTTCCTATAAGGCTTTAGGATACGGAGAACAA TGTTCATTTTTTGTTTGTTTTCTGGTAGTTTAAGCATGTGTCCAGACGAAGATTTAATGTAATTTTTAAT TATGCATGATGTGAATATTTGCTGTCCATACTCTGTGCATTTCTCGGTGTGATAAAAAACGTACGCCACT TGAAATGTGACATCACATGGACAACCGGACGCTTGTCTCGGTACGCTGTACGCTGTCAATTAGTTGTTAG ATGTCACGGTCAATTCCTTAGCTTTGAAGAGATTATGCACAGAGTATGGACTGCATATTTCGATCAGAAT AAAAAACAAAAAAAGAACAAAAATAGTACGCAGTGCAGATTTGCAAAATTAGTTGAGTGCATTTCATATA CAAAGTTGATTTATACTGCACAGTCTAAATATCTAATTAAAATTATATAAAAATGTTATTAAGCATGAAA GAAAAAGGAATTATGAAAAAGTGAAGGATTTTGCTTGGGGAGAATGTATTAGCCTATACCTTTCAAATTT ATTTGATAGTATTCATTTGTTTTGTACTATATTTACATTTCTACAGAGATTTTATGATGCTGTTTCATTT TGAAGATACTATGTATACACAAGCAATTACTTTATAGTGATGTACGCACGTTTGTGGCTGTGTGCGTAAT ATGGTGTGGGTGCGTGCGTGTGTGCGTGCTTGCGTGAGTGTGTGTGATCATGTTATCATGTGTTTATAAT TTTAACTGGGTTATATAAACTATCATAATTCTGTCATCTAAATGACATTTTTTCGGTTTCTCTGATTTAT TGATAAATCATACAATTAGTTGCTTTTTCCTTCTTTTGATAAATTAAGTAACCATTGAAGTTGGACTGCA TTTCAAAAAGACTGAGCATTACTTTTGCAGACAATACACAATGTTATCGTTGGAAAGGGCAATGTTCGGG TGCTAAAGTCTAAACGTGTCCTTGTCTATCATGTACACAGCAAAGCAGTATCGTCATTTCATTTAAAAGA AAGAGATATGAAGAAGTCAATATTGATACGGATAACAATTTAATATGGATGATGTTGTATGTTCTGTTTT CTATGGTGAAAAACAAAATTTATAATAATCAAATGTGCAGTGTTTTGTCTCAACAATTCCACTTCCAAGA CTCAATTTTGAACGTCCATCATAAACGACATATTTATCATATTATATATTGATTGTCATTTTCTATTTGA TACAACATGTAGTGCTACAACCGTAACTCTTTCCACAAAACAAAACAAATTTGTCAATAATGAATGTTTG AAGTGGATTGGAATTGACGTGCGGAGAAAAAAGAAGGTTTACAAAAATGTCTACTTGTGGCACTGTGTAG GCAAACTATTGTCATGAAGTTATTGTGAATGATACCCAAAATAATTGTACTTGTCAAATATAAATGATTG TGAGCCTACATGCATGACACTGCGACACAACTTTGTTTATTGTATAGTCTGTTAATCACGTCGTTTCTTC GACATTTATTTCATTTATTTCGTTTCAACATGAATAACAATGAAAATTTAGAACTAGAACACGAAAAGAC ATGAATCGAAATGTATAACAATTTACTTGTATAGTTTTTTTTTTACCTTAAACCACGCAGAATAATATGT TCACTATGAGGGTAAAGGGGAAAGCACATTAAAATAAAACTTTTTGATAATTATCTTGATTAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds