Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT114673.1 TSA: Strongylocentrotus purpuratus WHL22.408933.2 mRNA sequence GCTATCTCGACATCATCATCGGTTGGTCGGTGTGTGGAGGAATAAACGAGCATCTCGTTGGATTCGGTGA TGAAGATGAGAGCATCACTCGCTAATAGAGAAAATCACTCCCTCTCTCATCGCGTAGAGAGTGCGCTGGC TGTTTAGCGGTGGCGTAAGAGACTGGTTGTTTGGCGTTTAGGCGAGTAAGCTGTTGATACGTGCTTATTA CAAGAGAGTGTTGATACAGCCTAGTGTGGCTCTCGCTATGGAGTGATGAAAACTGTGAGTAGGTGATAGC AGGTTGCAAGACCTTCTTGTTTTATCACAATATTGGAAGATTGGGTTGCTTAGGATCGCATCCACCATTC CTAGAATCATCACGATCAGCGACTGAAGCAATCGTTAACCATTGTTTAAAGAGTGGAGCAATGATCATGG CTACCATTTTGAACCCTATATCGGAGATCGTTCGTTTCACGGAAAATAATCATGATGCATTTCGACAAAC TTATCAGCAGGGCAAATCTGTTTATCAGGAATGGACAAAATAACGACCTTTTGCTCTCACTGTGATAATC TTCAATTGTGAATAATGGTTTTTGTTCTTGCACAATATCAGCGCTGAATTTTTGCTGCAGATATATTCAC TAGAATTATTCATCACTTTTGTCGACCGTCTTCTCACAAGGGAGATATTTGAACTGACTGTATGGCACAG TTTTCCTACTTGTGAGTTTGAAAATTGCGGCAATAAAACAAGAGGAGATACACTTTTGTGCGGCTGCTCT AATTATAATAATTTTCATGAGGATCTTTCTCATCGAGACTCCAATGCTGAATTGCTAATTGATGAATCTT TTGTCTGCTTGTTGAAGACAGCAATTATTGTGCGGAACTTTATGAACATCCATTTTGCTTTTGGGAAGGC ATAAAACAAAATTTAATGACAGGACATACTTTTTGTGCAAAACAGAAAAAGACTTGAAAGGAAGGCATTT TAAACCAAATCTTACTGGACTCATATTAAAACCAGTTGGCTTTTGTGAGGTGTGTTTGTGAGGACGCGGC TGTTTAAGTCATCTTGCTCATAAAGACTGATTGGAATGAGAGAGACATTTTTGATTGACTGAAGACTCAA GCTGTTGACTGTATCAATCGACGGGACTCTGGACTGGACGGTCTGCTAAACAAACATACAATTGAGCAAA CACACGGACGGACACATCGTATAACTACTATTACTCTTCAAGAATCTATAACAACCAAATCTTAGATTGC AAGAAGTGAAGACTGACCAATTCAGTGTGGAATTAAATGAGTGAATTTGAAACTTAAGGATGATAAGGAA TACTATGTGAGGTGATCTGCTGGAACAATAACTTTTGACAATGAGAACTTTGAATAGATAATTGAGCTTA TTGTCAAACCTAGAAACTGATATTTGGATCTGTTGTCAGAGCAAGGAGAGTGGAGGAGTACTTTTTAAAG CAGTTTTCTCTTCCTACTTTTGCCGAGGAATTGAGCCATTTTCTGCATCAGATGTGGAGGGTAACCAGAT TAAACTGGCACCCAACAGGACCCCGGACCGTGCGTTGTCAAAATGTCTGCCGATAGCGGTGTCGACGAAA CCGAAATGCAACCCCTTCACCCGGGCGGCAGTAGCGACACTCAAGCGGACTATGACGCCCCTACCGACAC GACGACGACGACCGCCAAGAAGCCGGCCAAGTCCGCGCTGTCCAGCCGGCCCCAGCGGGCCAAGGTGGGC TTCTTGGGAGTGGCGGACGAGGACGAAGACGAGTTTGACGATGACGAACATTCGGAGATGCGTAAGAAAG TCAAACAGGAGTTTAATAAGATGAACGGGCGGTCGTCGAGTACCCATGCCCGGCTGGCCCAGCAGCGTAT GAGCTTGCTGGGTAAGCCGCTCAATTACAGGGTTTCCAAGAGAGATGCAAGATTTAGGAAAGTTCAAACT CGGATTTATAACTTTCTGGAGAGGCCCGCAGGATGGATGGCAGTCTTGTATCATGTTTTAGTATTTCTGT TACTCTTTACGTGCCTTGGTGTAAGCATAGTTGCCACTGTTGATAATCCTACTCTAGCAATGCTCTGCAA CCACATAGTTTTTATACTGGAAATAATTGCTGTCCTGATCCTGAGCACAGAATGTACTCTTCGTATCTGG TCTGCGGGGTGCCGCAGCCGCTACCAAGGTCACTATGGCAGGCTCAGGTTTATCAGAAGACCCCTTTGTA TACTCGATATTGTTGTAGTCATAGCATCAGTGTTAATCATTGTCATAGGCAGCAGCAATGGAACCTTCCT CGATCCAGCATTCCGTGGTCTTCGCTTTATTCAAATCCTGCGCATGGTTCGGGTGGATCGGCGCGGCAAC ACATGGAAACTTCTAGGCTCCGTTGTCTGGGCGCATAGACAGGAGTTGCTGACGACGTGGTATATTGGTT TCCTGGCCCTAATTTCAGTGTCTTTCTTAGTGTATACATTGGAGCATGGTAGTCCCGATGATGATTATAA GACATTACCTGATGCCATGTGGTATGGTCTGGTAACCCTGACGACAGTGGGATATGGGGATAAAACACCA AACTCCTGGTCGGGGAAACTAGCAGCAGCGATCTTTGCCATCATTGGGATTTCCTTCTTTGCTCTACCTG CGGGTATCCTTGGTTCTGGTTTTGCTCTGCAAGTCCAGCAGCAACAACGCCAGAAGCACTTTGCTCGGAG ACGACATCCAGCAGCACAACTCATCCAGTGTCTGTGGAGATGTTATGCTGCAGATCCCAACTCTAGTTCT ACAGCCACTTGGAAACCGCACATCAAACCTGTACATAGCCCCACCACTGGCAGCTTCAGGTCCAACAACT TCATCTCTCGGCTCTCCATGAAACGCAACAACAACACCGCCAACAGCCCCATGATGCACCGCACCAGCGA ACGTCTCAAGAAGTCCGACCGGGACTGCGAGGACGGAGATCACGAGGAGAAGAAGACGATGCTGAGCGTG AGGCTGAGTAACGGCAGTCACGGAGGTCTCTTTGATGATGAGGAACCACCGGTCCGTGTAACAAAGCTCA CCGAGGCGCACAAGAACGCCATCAGAGCCGTACGCAAGATCAAATATTTTGTGGCAAGACGGAAATTCAA GGAGGCATTCCGGCCGTATGATGTCAAAGATGTCATTGAGCAATATTCCTCTGGTCATGCAGACATGCTG GCCAGGATTAAGAACTTACAAGCGAGGTTAGACCAAATCTTAGGCAAGTCTGGCATGGAGAGGAGAAAAG GTCGTGGAGCAGGCGACCTGGAATTATTTGACCCTAATATCAGTTTACTGTCGCGTGTTGTGAAGGTAGA GAGAAGAGTGACTCTCATTGATAGGAAGTTAGATATGCTGATTGAGATGTATCGTGAGGAGAGGCATGCC AAGACGGCTGCCGAGGGGGGTAAGGAGGAGGAAGGAGAACATTCCCAAGAGTCCGACCCTGCTCCAAGAG GGTTCATGAGACGGAGAGGATGGGGGTCGTACCACCAGAGACAGAGGGAACCACTGCCGCAGCGGGTGGA GTCCTCCGACACGTCCTCTGCGACATCCCCCGCCGACCCTACAGCCACTACTGCAACCATTCAGAAACTC CCCATCTCGTCCTCGCAACCCAGCCTGCTGGAGGAGAAGCTCGTGACGGGATTGAAGACGTCGCACTCCC AGAGCGACGTCAACCAGAGCGGCGGCGACGACTCCTCGATCCATTCCCACGACCGCATGAGCGACTCGAC GCTGCGGGCTGAAGGGAGCCCTAACTCCAGCGAGAGAGACATGGAGAGCGATGTGTGCAATCCAGCTACC AGTGATCAAGACATTCCAGCAGCCAACAACCCTCCGCGCTCACCGGACACGGTGTCCTACGCTAGTAGCA GGCTGTCTAGTACAGGCAGTTCTTCAGCTTTAGACAGTGAAACAAGAATCTAAAGTGTGTGTACTTAATG CATAGATCCTAAGGAGTGTTCTATAGAAAAAAAATTGATGGCACGTATTGTGCGCAGTACTTATATTGTC TTTATCTTACTGTACCCAGTCAATACCATTTTCATGATTATAGAGCTTTAATGGGGATTTTAACAAAGTC TAACTATTTCATGTTTTTGTTTGTCTGTAATATATTTAATTTTTGGTACGAGGAACTTGAAGGTGCTATG ATATGTGTATAATCTGCTATACATTCAAAATGCTAATATCATTAATACTTTCAAATTGTAGACTCCGTTG ATTCAACTCACCAAATTTATCCTTGAAAGAAATCTTATAAGAGGCCATATATTCAAGATTTCTGGGCTCA ACACAAGACTTTTTTAACCACCGATAATGCTCAAACCACCCAAAAATCCTCAAGAGAAATTTATTGTGCA CAAAGGCGAAATTTTCTGCATTGCTGAATGGTAATTTAAAAAAAGAACTGTCATAATTGAATGAATAAGC TGATTTTCATTCATTCATGAAAAACAAGTTGAAAAAAATGAGTCTGTCTAGTGGTTTGCATACAAAACAA CCCAAGTTCAAATCTTAGCTGCAACTTTTGGATGCTGAAGTATGTAATGAAATACGGTTACAGTACTCCA TAATTATCCATTTAATGCTGGTAGAACAAGTACGCTATTTCGTCTGCTCAGGGCCAAAAGAAAGTCAATT TAATATAATTTAAGACAGAATTAATGTACTTCAGGATCTCATTGAATGATTTACAGAACTAATAATGTCT CTTCTGTGTATATGTCATGTGGTTTGAAATCTGAATTGCTCTTTAAACTTTAACAAAATATGAAAGGATG ATATTTTGCAATGTTGATTGCTGGTTAGTTCTGCTGACATTAATATTTTGTTTAAAGTGACTCAGTAACA TTGCCTCATTTTCCGAAACAAAATCCTGGATCTAGCTCATGCTGCAATCATAATTATAAACCTTTAGGTC AGTCAGGAATCCTATGACTTTTACAAGCCGATCAAGATTTGTGTATTAAATTTGATCACATTACAAAAAT GGCCTATTTGAATTGTGTGATATATTCTATACTACTACCGTTTTACTCTTTTTAAAACTAGGCTGTCAAT TTTAGAGTTATATTGTAATTGTCTTTTTAAAGTAACATTTTTTATTCTCCTATAGGGTATGCTGGTTAAT ACTGCTTCCTGTTTTAAAACTGTTGAGTGTAAAATTAATAATTAGATTGTTTTTTAAATTTCCATCTTAA AAAGAAATATAATCATGTGCATCACATATTTCATGACCTTTTTTATTATGGGAACCTAGCTTCAAGCATA ATCTGGTTTTATATTAAGTTGACTGAATAAAAGTTGTTAGCAATTTTATCCAACCATGTTTCAAGAAGTA CATAGAAAGCAATGTATAATGCTATATGATTTTAAATTTTCAATATAATGATGCAAGAATTCGATCAAAC CAGTTGCAGGCGTATATTATCTGGCATTACTGTAAAAAGCAAACATTTAGATGTACATGTACTTGTTTTG GTCTAATACAATGACTTTTAATCTACTGCAAATGTATGGGATGGATTTACATGTGCTCTCTTGCTCTTGT GATTCAAGTACATTTAGGATCAAGTTATCGCATACACATGTGCCTGTAGAAGAAGCTTCTTGACAAAGTT AGAAATATTTTAACTCTGATCATGCAGATTAAATAGGATAATGCCCATTTAACCTACATTAAAATCATAC ATACATATTACTTAAAATCGATCATATCGTATGTATGTACTTTTCCCATTTTGATGCTAACGTATAACAT AATATTAGAGTGTTAAAATCATTTTTTGAAGTTTCATGATGGAGGAAAAGGCCTTCAATTCGACTGATGC CTGTTTTGATAAGATAACGTTAAGAGAAACCATTTGCATTGCCTGTTTCCATGACGATGCCATATGCACT TTCCAGGAAACCTTCAATATTCCTCTGCTTCGTTAATGCTAGGATATTTGCATGAAGCCATTCAGTTTCT GTCTGTCTCACCATGGGCAATATGTACATGCAGATGTAATGAGCCATTTCAAGATCATCACCTACACTCC TACAGTAAACAACAAAGATATGTAGTCTCTCATCAAAACAAAACCAGAGATAATGAAGATGTTTCTTCGT TGTGATTAGCTGCCTAGCTCTTTGAGATTACTAGAATAATAATAGGAAGAAGATGGAGGAAACATTGTCT TTGACAATTTTTCTGAAGCTATCATTTTTTTTTTTAAAGACGGCTGCCAGCCATAGGAATATATCTTAGT CAGTAACATTGAAGTGGTCTGTTTGTACATGCCAGAATTTGTCATGTACACAATATTATTATGACAAAAG TAAAGACGGAGCAGAAATTTGAAGACACATTCCAATAATGAGTGTTAGCATAAATACTTCCAAGACACTT GCATGGCAAAATAAACAAATGATAGAACAAGCCTGAAATGTAACACTTTTTTGTTGTTGTCGTTTAGGAT TCTTGAGATTGCTTTTCTTTTGACTGGAATAAACATAATTTTAAATATAATATATGTATTTTTCAGTTGT TATAGAAATAATAGTAATATTGTTTAAGACTTAATTGTATTATTAAGATATGTGAGGAGGCTGATAGAGA GGTTACTATATATATATATATAAGTATATATATATATACTGAAGAGGATCTTTCTCGTAACTGAGCTTTA CATCATATAAATATTATGCCTTGTATATAGCCTCATTTTTATATATGAACTAGCAAAAAAATAATAAAAA ATGTTGCCAAAATATATTGAAATTAGATTCTACAGGGCTTTATGTGTTCCTTTTGTATGATGAAAAAAAA AATTATTGAAGAAATATTTGTTTATGTACAATTACCTGATGTAACTGTGGTGATATGTATATATTATAAA TATGAAAATGCTATATATAACATTTGATTACTATGATAGTAGATTTTAGAGTCACATAAGGGTGATGGGA GTGATAACAACTTTTTTTTTCTTTTTCAGTTGAGATTGGCTTGTACTTTTATGTTGTGAACTAATGAGAA ATGCTTGAAAATGTGATCATATTTGACAATATTCCTATGCAGTTTTTTCCTGTGAATAAAAAATACATCA ATATTCCTCATAATGCAATA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds