Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030980337.1 PREDICTED: Strongylocentrotus purpuratus uncharacterized LOC582959 (LOC582959), mRNA AAACCTTACGAGAAGTATTTCATAATAAATTAATTTAAAAGATCTTCACGCCCATTGGAATTCATTTTGG ATTTAATTTGTCTTCACTGCACTGCAACCGAAAGCAGATAGATACGTTCACGAGAGGAAAGTCGGCTGAG TGTCTCTTCTACTTCTACTTCTTACTGTTCTAGACTTGCGCAATCTCTTCCTGAACTTGAACTTAGGCTG GAGCCGCTGGACCCCCTTTGTGATTGCTGTCTACCTGTCCTGTGTCTGTTCATAATCGCCTGCTAACTTT GGCATAACCTGATCCTGTCACCCCTCTCAAGGGTTGTGAGCTGTGACTGAAATGGCTATACTTGCACGAT GTTGTTGCTGTAGCACTATTCGCAATGGCTCTATTGCTGCAGCTATTTATTCTTTGCTTCAAAGTGCTTT GGCCCTTGGATTGTCATCCTTTAAGATTCACATCTATGAAACACATCATTTTCCAGATGGAATGCCAAAA GAAGAGAGTGCCCTGTTCATTGCGACATGTGTTGATCTAGGATTTTTCTCACTTCTCTTCCTCTTATCCA TTATTTTACTATATGGAGTCAAGAATAACAAGCGATTCCTACTCCTGCCGTACATTGTCTGTATGACTGT GCTGGTCATCCTGATGTGTGTTATCATCCTACTACTGGTGGTGGTGGTTGTAACCTCATTGGAAGGAAAT TCAGGATTAATGGAGCTTCTCATTGTGTCACTCTTTACAGGATTAAATCTGTACTGTGTGCTGTGTGTGA CATCACTCTACCAGGAGCTGAAAGAGGGACGGTATGGAATGAGGGCTATATACAGGGCCCAAGGAGGCAG GCTCCCGAACGCTGACAACCCACCAGAGAAACTAGATGACATCAATAACTTGGAGAATGCAAACTTTATT CCTCAGTACCCTGGACCACCCCCTCCTGGTGATGCCAGCGCCGCTGCTCTTGCCCCCATACCAGCTCCTG TCCCTTATCCAGGTTCCATGATGGGGGCACCCCCTCCTTACGAACCCCCTGCATACCCTGCTGAGACCTA CCCCAAAGCAGAGATCAAGACTGTTTGATCCATTGACCTGTCTGGCCGGGTCCCAGCTCTCTCTCCTCAT GATTGATGCTGGTTTGTTTCACACTCATCTTTGCAGCAAGATGCTCTACAGTTCTTACGGACCAACTGGT GGATGTCTGTGTCGGTCCACTGCATATTATTGGTTTGTCATTGGGCTATTAACATTTAGATGTATTCTGC TAAGGTTTTTAACTGCTTTATATTTCTTATGCACCTACTTGTGGATGTCCGTGTCAGTTTTACCAATGCA CATGATTCCTTTGTCATTGGGCATACATGTACATCAATGTATTGACCTGAGGCTGGGCATGTTTTGTATA TTAACTGCCAAAAAAGCATTCCTTACATTTTATTCATTCGTCAGCCAATGACATTCTTTAAAAGAGTGAA TTCTGGTCCTTTTGTCAAAGACAATCATACAAAAACTCACTTCATCCATGTAGATCATATCTACTGTTAT AAATGTTATTCAGATTTAAATAGTATTCTCATGCAGATGTTGTCTTTATGTGGTCTGTTGTACATGTTCT TAGAAAATAAATGTTTCTCATTTTCTGTGTATGATATGAAACATGTCGACCATGAATAATTTGAGTGGAT GAAACCAAAATCTATACTGGTGCATGTGTTATTCACTTTGTTATTCATCTTGCAATCACTGTATAGCTGG CTTGCATGTATTATGCTTTGATTAATGAAATGACATTGATGGTCTATTTGTATTTAGCTACAACAAAAAC CTTGAAAGAGGTATGCCTTATGTATAAACACTAATGATGCAGTCAAAGCAAAGATGCCAGTATTATATAG TGCTTTATAAAAAAAGTGTAGGTACCCAATTTCGTTAGCTCCTAATTAAAAGGTCATAACCAATATAACT TTGAAATCTATGTTATGACAAAGAGTAACTTATTTTCTATCAAATGATAACCTATTCATTATATTTCTGT CCCGGGTGACTGAGCACCAGGGTCTTTAAAAAGTGCCTCGTACCAAGTTTAAGCTGATGGAATGAATGTG GGTCAGACCTTATGCATGTGCTTCCTTGGTCTAAATTCCTTTTAAATGTTAAATTTTCCCTTGTGCTTTA GTGTTTCATTGTTTAGAATGATGCAATGTATCTAGGCTTTCACAAAATCTTGTTTCAATCCATAAGATAA CCATTAGTTATCTTGAACATCCTCCTATCTTCTTGTCTCATGATATCTCTCTGCTCACTTGTCTGCTCCA CTGTTTCACTGGCATAAGGAGCATAAGGTGTTTATCTTGAATACTGAAAGAAAACTCGATGGTTAATAAA CCCAAATGCAAGAAAGAACACATTTGATGATTGACAGTAGACTTTCATGAAAAGAAAAAAAGAAAAGATC CTCAATAAACTTTATCCAATGAGAAAGGTTACCTTAAACGAGAGATGCGAATGAAGTGAAGATTGTAATC ATTATAACGAAGAGAAAACAAAATCATGAATTTTGCTTGTTATAAGCATTTCCCTGAGTTTAAGTTGATA TTTACACATTTGCTTTTCAACTGTCTAATAATCAATGTAAATAAGTAGACAATTACTTTTAGAATGAGAT AACACAAACATAATGGCTTTTTACCCACATTCATTGAGCTCCAGCCCAAACTTGGTACAAGAGGATCTTG ACAATACATTTTGAAAAGCCTGCTGCTCAGTCATCCGTGGCAGCACATTTATAAATATGGTATCATTAGA CAGGGCATTAGTTACCCTTTACCAAGCTATAGGATTCAAGGTGACATAATTTATGATTTTTTAATTAGAA GCTATCAAAGTTGGGTACATTTATTTTTACATACGATTTTCTAAGATTAAGAGAAATCAGCCTCTATGCA AAGAGATCAACCCACCTACTGTAATGCAGATAGATAGATAAACTGGGCTTGAAGATCAAATTACTGAGTT AAACTAACTTCTTCAAACTTGAGTTGAACTTGATGTCAAACTCTTATTGTGTAAGCTACGCAGAACCGCA TGTTGTACATAAAATATTAAAACTTTGTTATATTCATGTCGTGAGTTTACAAGACGCAAAACTGCATGTT GTACATAAAATATTAAAACTTTGTTATTCATGTCGTGAGTTTACAAGACTAAACGTGGATAAATTGTCTG GCAGCCAAAGAGTTTTTACAAATGACAGATAGCGTTGGATGCATTAATGTTAATAATCTCCTACATGTAT GTTGATAAAGCAAACTCTTAAGGTAACTTGAGAGTTTACTGAAGTCTGTGACTTGTGTCTTTAACAAATC TGTAATTACAGAGTGGGGTAATTGATCATAATGCGCGGCAATCTGAGAACTGTTACATGTTTTACAAAAT GTTGATGTATGGGTCCTTGTCATTTGAGAATTGACTGTCTAATACCATAGGGGCATTGATTCTATTTGAA AGTACATGAATTAGCATCTATCTGGCTCTCAACAGTGTTATTGGTTTAAGAAGTGATTATGTCTCGTCTG CTACGCACTCAAAGAATTGTAATGTATGTGCATGTTCACCAGTGGGGTAATCTATTGAAAACTAGGTCTA CTAAACCTCTTACTGGTCATGTACCGTAAGTGCAACATATGTATTTTTAAATGATGATAACAATTGCCAG TATGTAGGTAATACATGCTTGGTTGGAAAGTTCATTACATATTTAGACGGCAAATCACTATTTTTGTACG TAAATCTGCTCAAGCTCAATACCAAATTCTAAAAAGTAACGTAAATAAGAAATTGGAGGTGTTAATACTT TTATCTGAGAGAGATGTATATTTCTACAAAAAAGAAATTCAAGACGTATGCAAGGTAAAATGCTTTATGA GTCGATTTATTTTTGTAATTCCCATGTGTCAACACTTCATTGCACTGTATAATGTGAAGTTGAAGTTTGC AATTACCAACGTTATGTCATGTTAAGTGTCTGTATGAGAAGTATTTTTTTTCATTTTGGAGAGGGAGAAA GAAAGATTTTTTTTTGTATTTTCTACTTTTTTTGGAGGTTTGTGGAGGTTAATAAATTTTAATAGGCACA CAAATTATGGGGCGTACAAATGCATTTGTTAGTAAAATTCCGTGTGACTTCAGAGTTTACAACTGAAATT AGTTTAATGACATCCAATTGAGCTAGATAGAATGAATGAAGAATTAAAAAACACATTTATTATTTTATTG TTTGAATTGAGGAATCACATAGATCTATCTTTTTCACCTTCTCTAAGCATTGTCTTTAAGACATACAGGG TTAGGATTAACTTTATTCCATGTTCCTTACAGTTCATAAATGTTGATTTAATATCTCTTGTATAGTTTAA TATTATTGCATATATACATGTATCTACAGAGATCTTGCCTGTGTTACGATCTGTTCTTCAGTGGTTTGTA AGCATTACAATAGACTTTAGGACAGTTGATGGCATGTTCTATAATTTTGCTACAAAGGACTGCTTACTTT TTTTATGCTATCTTCATATTCCAAATATTTTAAGTTTGTTGTTTTAATGTTTTATGTTCACTGATCTTGC CACCAGTATTATATATTTGTGCCGTATTTTGATAGTTGCCATGAAATTCAAGATCAAACAAATTTTCAAA ATTCTTCTCATTTCCATGCCAGAATCTTCAATCCATTCATAGTACAGTGACTCAATTCCTTTAAAAGAAA CCAATTTGAAG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds