Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT113421.1 TSA: Strongylocentrotus purpuratus WHL22.339830.1 mRNA sequence ACAGGTCAATGTGGAAAAGGTTCTCCATGAATACAAAGAGATTTCTGAGTTGAATAGCATATTGCAATGA TTGTAGCGCCTGGAGCATTGATATCGTGACCATTTGTGAGATCATGAGTTAGATAAACTTCTCAAGGCTT CAGAGAGCAGAGAGATCGCACCATGGGTCAAGAAGTGCCACTCCTCAACGAATACAAGCGGGATTTCTTC TGGAAGAGGTTCCCGCAGACCCTGCTAGGGGGTCCTAAGCTCAAGCTTGGCTTCTCTGCACCAGCCTATG TCTACATCAACCAACTCACACTCTTTCTCCTGCCATGGCTCCTGGGAGGTTTGTTCACCATTGTGGTGGA GCTAGATGTCCTACAGGCCTACATCGCTTACTACGTCTACGGGGCATGCATGGTGATATACGTCCTTGCA GCACAACTGATAAGTCTGATCATCCAGCGTAGGGTGGACACAGTGGCAGCTTTTCAGAACACGAACGTCC TTGCAGAGGAAGACGAGGTCGAATTTGACTCCTGCTGTGGCTACGAGACTTTCCAATACGTCGTGCCTTT GAAGCGCTGGAAGATCAACATACTCCTGCATGGGTTGGTATCAGGGTTAATGGGTGGACTTGGATTCTGG TATCTCCTGCCTTCAGTTCTGAATCCCCTCTTCAATAATATCGGAGCCACTGTCATGATTTACACGTTTG GATGGTTAACACTTTGTATAGCGCAGTATCCTCTAAGCACAGGATCACCTCCAGAGCCTGCATCCTTCAG GGCTATAGATAATCTAGAAGTGCTGCCCTTGTTGAGACCCTGCTATGTCCTCATCTGCCTTTTGGTTCAT CTTGCTTGGAGCTTTAGTCCATCTTCACTCCTCCTGACCAACCAAATTATGCATGTAGTCTTCATCTTTC TGCCTGTCCTATGGTGTCTGGGTGTCCTGCCTCCTCTTGATGCTCTAGTCCTCTGGCTCATGGAACAAAC TCTAGTCCATTTCCTGGGAGGATCACCCATGGCTGGAGACCTCAGGTCCTTCCTCATGTTCGTGACCTCT GTCATCATCGCAGTAATCACCTACTTCCTCCCGACCTCCCTGGCTACCATTGTATTCTCAGCATGCTTCG GCTACATCCTATCCCTCGACCTCAGCATCCTGGCCAATCAGGTAATAGCTTTCATCAAGCAATGTGTCAA GAAACCAACCAATCACAGCCCATCACACAAGAAGAAATCTAGTCCCGATCCAGCTGCAGATGAAACTGAT GACAAGTTGAAAGCTATGGGATTGGGATGGACGTTTGGATGGCGAGAACTCCTGATCAATACATGCATGG TGTTGGTTGTTGGAGCTATTTCAGGAGTCTGCACACACTTTAGCTCCTCTGCACCTTCATCAGTTGTCAG AGGTCTTGGCTATGCTATCATAGGGTTGATGGTGATTGTGAAGATCTTGGGCGATTGCCAGAAAGTTTTT GTCTTTTGGGGATTGCTCAGAAACAAACTTTACCCAGACTCCATCAGCAGCACACAGAAATACAGTAAGA GGAAAAGGAAGCTTCACAGACTTGGCTTCATAAAGAGATTCGTACTTGATTTAGTTTGCCCTTTTGTCAT GGAAGCATACCTGGGACTCATAGTGGCCTATGCTGGGCTAACATTGCCATCTTTCTGGTTTGCAGTGGGA GCTGTCTACTCCTTTCGCAGGATATGGCAGCATACAAGCAGCTCTTTACTAGATGTGTCCATCCTCCACG TCTTACTAGAGCTAAATGTGTATGGCTCAACAACATATGTTTCCTGGTGGCCTACAGACTATGGTCTCCA GCTGATCTTCATAGGTCTCTTACACTCCTGGATCAGTCAGACCCTGCACAAGGTCTACTGCTACCTGACC ATCCTCATCACATCCTACACCATCGAGAAGCAACGAAGGAAGTCATCCCTCCCGCTCATCATCATCTCAA TCCTCCTCTTCCCAATCGTCATAGCAACCATCATGGCATCCAGTATCCTGTCGGCCCCTATCTTACCCCT TTTCACTCTGCCAATCATGCTCATCGGGTTCCCACGACCCCTCAGGTTATGGCCTGGAGCAGTTGGTGCA GCAGCCAATGTCTGTGCAGACACTGTGTACTACAAGCAGCTGGAGAAAAGCCTGAGAGGAGTAATAAGGA GAGCGGTGGCCGCAGGCAGCTTGGGTGAGCTCGCCCCAGGATCATTCCTTCTACTACGATTCCAGGATCG CATGGCATGGCTCCAGGTCCTAGAGTGTGGCTATGGCTTTATTACAATCAGCCTGAAGGGAATGGAACTG CAGGAAACCTCCTGCCACACTGTGGAGGCTGCTCGGCTGGACGACATCTTTGAAGCAGCCTTCACTCATC CAAAGGAGAAATTCCCAGTTTTTTCCCTCAACCAGTTCCCTATGCACACCTTGACTCCCGTGGATGCCCA GCCCGTGGACACTTACTCAGATGCCAGAAACGTTTTGACTGGCATCATAGATTCCCCGGATACTTTAGAG TTGGTTGATTCTTGTTTCATCAAGACACTTGTGTGGCTTTTGATGAGACACAATTGTGCCAAAAGGAAAG ACCTGCCCACTCCTTCATCAACCAATTCAGGATCAAACATTGGTAATTTCAAGGAAAGTGGGAGCGTGAG CAGTAGAACGAGACTTGTACAAACGAAGAGGGTTGTCAGTGTCAGTGAAGACAGTGGACGAGCTGAGTCG ATAGAGTCCAAACCTATGAGTAGTCAGGTCAAGAAGCAACAGCAGCCTAAGAGAAAGTCTTTGGTAGGTT CTTGGCATAGTCTTGACAGCTGGGATGATGATCCTCTAGAGCTAGACGTAATGAACAGCAAACCCAAGTT GAATTCCAGTGCAAAGAAGAATGAAGGCCAGGTACTCAAAGAACCTGCTGGCCTTCCAGGTGCAATCTCA GATATTTCTGATGATGAAGTAGATGATATTTTGAATGAATTTGAATTTGGTTTACCCGCAGTGGACATCC ATGCTCCTAAGAAGACGGCAGCTGCAACAAAGAACATTCCATTTACCCAAAGAACCATTAATCTAAACGC CTCTGCCCAGTTTTCATCTCCTCACTCATCAAAGTTAAGCTTACCCCTCAAATGGCGGGAGATCCCCATA GACCAGAATCTCCTCGCCCCTCTCCTGCAGAAATTCCCTCTGGACTGGTACAAGCATGTCATTGCTCAAC TTGGTATTGAGTCCAGCAAGTCTCCAGAGGACATTGCAGCAGAGATAGGCTCGGATGAAGCCCTGACTAC CATGTATGCCAACCTGGTCATGGCATGCTATGGCATTGTCAATGTCTTTGGACTAGACGGTATGTCTGCT GTAGGAGCAGGAGCTAGTCATGTCTACAAGGTTTATTCAGGCGATATCCCGTGGTCCATGAACCAGGAAT GGCTGACATCAGATGAGGAGCTCCATGTTATTGTGTTGCAGGCCTACAGGTTTGCTTTCAAGCTCGCATA CGACCAAACCGTACTTGGTGAGGCATCGGACCTGGATGAGATAGTAGAATACCTTCAGGAGTATGAGAGT GACTGGTACATGGGAAGGGATACCGATGTAGCATGGTCAGAAGCAGTCGAGAGCAATAAACCAAGACTCT TCTCGCTCATCTATGATACTAATGAAAACACCTACAATGGACGCGTCCTCTCCAGGCAGCCTGTGGTGGT TCACATTGGACAGCTCAACTCTGAGATGGTTCGCTCCCTTTGGTCTTCGCTCTCCCTAGAACTCTTCTAC TTCACCAACGATGATGAGGAGAGATACAGCATCCAGGCTCATCCAGTCATTCTCAGAAACTTGACAGTCC AGGCAGCTGATCCTCCACTGGGCTATCCGATCTATGCCTCCAAGCCTATCTCTATTCCAACGTGGTAGGT CCTTCAGAACCTTCAAGGGTTCTTTTACTTCACCAACGATGAGGAGAGATACAGCATCCAGGCTCATCTA GTTAATCTCAGAAACCTGACAGTCCAGGCACTGAGCTGATCCTCCAAGCCTATCTCTATTCCTACGTGTA CGTGGTAGGTCCTTCAGAACCTTCAAGGGTTCTTTTACTTCACCAACGATGATGAGAAGAGATACAGCAT CCAGGCTCATCTAGTTATTCTCAGAAACCTGACAGTCCAGGCACTGAGCTGATCCTCCAAGCCTATCTCT ATTCCTACGTGGTAGGCCCTTCAGAACCTTCTAGGGTTCTTCTTCTTCAAGATGCTCTGAAGATTCTTGC AGATGTATAATTGCGTGTGTGGCGATATAGGGATGCCCAGGTGAAAGGTGTATACAATGTGCCAGGGTTC CTCTCCTGCACCAACAATGATGAGGAGAGAATTAGCATCAAGGCTCACCCTGTAACCCTGAGGAACCTCA AGGTCTAGTATGTGACCTTCCCATCTATGCCTCCAACCACCTCTCTGTTCCTTTCAAGACCTTCTTGGTT TCATCTACTTCAAAATTTCATGAGAGATATAGTATCCACACTCGATCTTAATATTCCTCTGGAACCTCGC AGTCCAGACCGCTGATCAACATCATGGTCTTCCCTGTAATTCCCTTCTATTCCCTAGCTCTCTTTCTCTC GTCAGAAGACTTTTTACATTTCTTACTCTGCTAGAATAATCACCCCCCCCCCCCCCTCTAACCAATGAAT AAATTTTGTATTAATCAGGAACAGAATTTTGGTTCTAAGCATCATTGTTGGAAGATCACATTTTGGGGGT ACTTTATAAAATTGTATTAACTTCTTTAATAGCTAACCTCCCAAAAAGATAGAATCTTCAAAGGGTTCAT TGAATTAATCAAATGAGAAACATGCGTGCACAGCACTATTTCTTTGATCTTCTATGTAGCATAATGAAAC TTTTGATGAAAATGTCCAAATGTAGGCACATGCCCTTCGGATCTCTTCCTGTGATAAGGCGAAAGCTTGC TGGTAAATTAAACAATCTTTCAATTATCATGTGATAATTATTATTTCATTGCAGCATCTCAGTTATAATA ATCATGTATTTTGTACTTAATGTAATATATATTGCTTCATATAAATTTACATAAACTTACATTCAAATTT AAACATAGATATATATGTTTTAATCATCAAGAAAATGTAATTGCAATCGATTCTAAAAGAATGATTTTTC AGAGTAAAGAGGAAACTAAACATGTATATATTAAATATATCGAAATTATTGGGAAGGAGGTTCTTTGTGG TACACTTATATGTATTATAGTACTGGTTTATGTTGAGGCTATGAGGAGATTAAGTTTTTGAAGTGTTAGA AAGATTGTCCCAATCTTAAAGGACAAGCTTCTGTTTCTGGGCATTCCTGTGCCATACATACTACAGTAGT ATAAAGTTGGTATCCTACGAATCATGGTAGATGTATGCATAGCTATGTACCCTCACATTAAATTTTCTGC AGGTGCTTCTTAAATGATCAGTGAAAAAGAAATGTCCACAAGAACGAACCTTTGCAGTCACCTTAGAATC CTTAGATGCTTTGGGACTTTTTTCATTAGCTCTGGCAAAAATTGGCCTTAGCCTATGCATGTTTGTAGAG TTGTAATTTATTCAGTAAGGAAAAAATTACGAGAAATATCTTGTTCAAGAACTCTACCTAATGACTTAAT TTTGTCTGTATGATCTTTTGCAGGAGAAATTGTCACAAGAAGATAGTGTTGTATTTAAAAAAAATTGCAA TTGGTCAATATCCCGGTACTTTTAAAGTCTTTGCTGGTGTGTGTAAAAAAGTAGTGCAATTCCATTGTCA CAAACCATAACCTTGATAACAAAGTATTTCTGTGAGTGAATTGTGTACATTATAATGGCAACTATGGTCT ATAGATATCTAGCCTGACATGTTTAAATTCTGCGGGCCAAAAATGTAAGTTAAAAACAATTGAACCTGGT ATCATGGATTACTCGTTATTATTTTTGTCATTATTATGTACGGTTTTGTTGTTCTTGTTGCTGTTGATTG TTTCTCCTTGCCCTTTTTTAACCTCTGCTGTACATTATACTTATTTTAATTTTCATTTCTTTGTCCATTC CGTCCTTTAGATTCTAATTTAAAGATTTTACACAGAAAATTGACTAAAGTAGGATATAATAAAACATCGT ATGGCTAATTATACCTGCAAGTCTTGCATTATTCAGTCCCATGACAACTCAATGTGTGAACTGAGGCCCA AAACTTTTTTTTTCATACTACACAAGCTACATGGAAAAAAAAAGAATCATTGCTTTGATACTTTTTGAGA GGCAAATTTTGTATTTTGGTACTTTATACTGGTAGACTTGGATTTTAATACGTCTACATTTAGGTGTATG AAACAGTGTACAAAAATTGTACAGCCTTTGTTAAAAAGATCCGCAAATAATCAGATAAAAGTCTATCGTT ATTTATCAATGAAAAAAAAAAAAAATTCTTTGGTGTGTGAAAATGTATGTGCTTGTCGCTTTTTGATGTA AAGTTGTTACATGTAAAAGATTTTCTTTTACACTTACTTTATGTTTCATCAGTATCTGCTGTCTGTATAT GATGAATGTAAATAGAAAAGAACTATCATCTCAGATATCACTCATCACCTTGATATTCATAGAAACAAAA TTAGAGAAAACTATCAAAGATATTTGTATGTGTGAATTTTCATTAAAAATGTCCAATCAGAAGTCAATAC TGC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds