Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT100141.1 TSA: Strongylocentrotus purpuratus WHL22.428198.0 mRNA sequence GTATTATTGCTTTCGCTTTCGGTGCCTGATTCTTGCTTCCCTTTCCTTGTTAACGTGCCAATAAAATTTG AAAATTCGAGGGAAAATGTGTTAAAGAAATAAATTTACAACTAATGTGGATTCAACGAATGATCTTCAAA TTGTTTACGCTGTGATTAGAATGGTTTCAAACTTCAGTTACCAGATGCACGCAGAAGATTGCGATATCGT CGTTGATCGATATTTTGCGTAAACAACGTTGTTGCTATGCCGTTTGTACCGTCTGGAACTCCTGCCGTAA AATACTTGTTTATTGTATGAAATTTCAATAATCTATCATTTAATCTCCCAGGAAAGATACCCATTGTGAC CGACATTAATAAATCACATTGATTAGAAACCAAGAACATGGCACCCAAGAAGAAAGGAAAGTCTGCCAAG AAGGGCAAGATGGCCAAGATGACAGAGGAAGAAAGAATTTTATATCTGGAACAGAAGGAGTTAGCAGAGA AAGAGATGCAGAAAAAGAAAGAGGACATGCTTAATCAATTTTTAAAGGATAAACTAGTGAAAGAGGAGAG GAATACCCGCTTCAACATGTACAAGATCACCCACCAGTGGAGGAACATCATGCGTGCTTCCAAGTCGAGA GAGCTGAAGAACGACATTGAGATCCTGAGCCAGACCTTTGAGCGTGTGGTGGACAGGAAGGACAGTGTCA TCAAGTCTCTGGTCAAAGACTTGCAGGAAGCAGAGGAACAGTATGCCATGGGGCTCAGGAGTCATCTACA GAATATGGATGGACTTGTGGACCTCCAAAAGAGCAGACTGCAAATCGTCAAGTCAGAATACCTGGATGAG CTGGAGATACTGAAGAAAGAGTTTGACACCGAGAGGGCGCTGATCATCGAGCAACACAAGCAGGAGCTGA ATGATCTTCAGGACATTCTCTTTGCCATGGAGCAGAACACGACCGAGAGGGAGAATGATGCAAGACAGGA TTTCCAGAGTCTCAGGGATGAGATCAAGAATAAGAACTTGGAGGAGAAGCATGCCCTGCGCCTACAGCTG GAGGGTCAGGTGGAAGACCTCTGGGCCCAGTTTCAGCAAGCCCTCAAGAGCTACCAGGAATCAACGGAAG AAAGGAAGGCTGCCTTTGAAACCCTCAAGGACAAAGACGAGAAGAGTGCGAAGGAGATCGAGATGCAGAT GCGCAAACTACAGAGAATATCAGACAACATTGCGTCCCTCAAAGCCAAGATGTCTCAGAACTCAAGGGAA AGTGAGGAGAGGAATCGAGACTTGAGGGAGCAGAGGGAGGTCATCGCTCAGCACTTCCATGAACTCAAAA GTCAGATGAATAACTTTCGGGAAAATGAAAGATCGCGGCTGACCAAGCTGACACTAGAAAGCAATGCATC CATCAAAGAAGTTAAAAGGAAACTGGACATGGGTGAGAGGATATTGAAACTGGCAGAGATGAGTCGTAAA CTGGAAACAGAAGAGGAGAAGGTTCTACCCTTCTATGCATCCAGTTTAACAGCAGAGGAACAGGAGGATG TAGCAGCTGCAGTAGCAGAACCACCATCAGAACAACTGGCAGAGATCATGCATGAATACCAATCCCTGGA GAACTTCTGGAAGCGCTACAACAAGTCCCTCTTGGACAAGGTGGCCCTGGACAAGGAGCGCTCCACCCTG ATGATGGAGAACGGGCGCCTCAGGACAGTCCTTAAGCAGTACCTTGATGGTATCTCAGTCAACGATGAGA TCCTCAGCCAAGTCAACCCGCTCTTTGTCGTCAACCAGAAGACCAATGCTCCAATGGCTGTACCTATCAT GGACCCAAGAGTGCAACGACCTACACAGACTGTAGTGGAGGCCGCACACATTGTCAAGCAGTACGCAATC TAGAAAGATGCGTTGTCGTGACATTCAAAGCGCAGTGGAAATAGTAATGTAAAATGATAATTAAGGATGA ATTAAGATCTCTACCATCTTTCTGACGTGGTTGGATATTTGTGTAAGTTGACTCTGGGTTTACATGAAGA GAAATCAAATCTTGAAACGCAACTTTTGATCCTGGTTGTGCGCAGTCATTTACTGATTTGACATTGCTGT GTTTCTCCAAATATTTCATTGAAAACATGCGGGATGTAATGAATATTCATCATTGACATTCCTTTAGTTA TGGGCTGTGGTGTTATAGTCATGGATTGCTTTCTTGAACCCTAATTAGATGCATATCAGACAAATTGATG CTTATCACTTCACGTGTTGGGCCATGGTGTTGTAGGATACAATATTCCACATGTCTACTGGTAATAGGGA CATAACATTAGTGTGAAATAATGATTTATAATAATTATTATAATTTGAATAATAATAATAAGAAGGGAAA AATATCAGATGTGCCTGGTAAATCAGAAAATTTGGTCAGTACAAGATGTAAAGAGAACTATGTATAGAAA TTATCATCAATATATCTTAAAAATGAAGAGGGGGAAAAAAATGCTTTATTTTCAAGTAAAATTCTTCCCT AGTTGTATAGAAAAACTTACAATTGAAGAATATATACATGTACATGAGAAGTAACACACCTCTGTAATCA GAAGTTAACACTTTAAAAGAACTATGTTTCTGTAAATAGATGTATATTTGTATCAATGGACAAATCCAGT ATGGTGTTAAAATGTGGTTTTCACACCAAAAATACATTATTAGTACTCTTCATATTCTTCTGATCCAAGC TTAGCACTGAGGTGTGGTGTCGTGTTCAAACTTTGATAGTAACTTTAGCCCACCATCAAAAATATTAGTG TTTTTCAGTTTCTTGAAACCGTCTTAAGTCTAACTTCTAACATCCCATTGAAATGTGTGTTATAGAATGA ACACACGTTTCTATGGGATGTCCATGAACTTAGACTTATGATGGTTTCATGAAACTGGCCCCAGGACTCA TGGTAAACCTGTACAATGTTTCAAGCACTTACAACACAATCACAACTACTTTTAAAAAAATCAGCCAAAG GCAATTTCTATAGCATTGTGCATCACTTGTTGAAATGTGCAAACATGAGAATGATGTATTACCTTGTCCA AACAATATTTCTATGGTATCTACAAAAGGGTATTGAATTTGCCCCAATTCGATTTTTTTTCGAAAATAGT TGTGATCATGTTTTACTAAGTAAAGTTGAATTCACGATACTGTTCTAGCTGTTTATTGTAATGCATATTT TAATCTGGTTGAATACTGAATAAATTTTGATTTCTACCAAATCTGAAAAACATCAATAATAGAAAGGAAT AAATAAGTGACGGAATTTTAGAATAATATATGTATCTACATGTATGTGTAAATAAAAAAGTGACATTTAA GAAGCCTTTATTGATTTATTGATCAATTTATTGGTTGTTTGTTTGATTAATTGATTGATTCAATTCATTG TTACTTTGGACAAATTTATTATTAGGTGATTAATATTCTAAGTAACATGGATGATTTCAGTTTGTCATCT TAACCATGTGTGAGAGGCTGGTTAGTTTAAATGATTGTTTGATACTTCAGTCAAATTGAAAAAGTGATTG ATACTTTTGAGAGATCGTTTAAAATATGATATAAATATGGATGACATCATTAAGTATACAACTTAACAAT TTTTGACAGGCTGGTAAATTTGTTTGATTGATTGTTTTATTGATTGATTTCTTGATACTTGGTCAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds