Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT107429.1 TSA: Strongylocentrotus purpuratus WHL22.700788.1 mRNA sequence GTTCCCATTCCCATCCCCGTGATCGTGAATGACCAGAGACAAGCTCGGGCAGGGAATACGGGCGCAGCGA GCAGACGGGCTCCACCCTCGGCTAACCCGGCCGCAGAAGTGCCGCTTCAAGTCACGACGCTCGCGACGTC ATCTGGTGGTAGCGACACCTTAAAAAGTCAGTCAGGAAAAGGCCCTCGGGAAGAGAACAGTAAACTTTCC CAACCAGAGGAGATCCCCTTACTCCTGGGTGAAAGAATCGAAGGCATAGCCAAGGATGTGACCTACCTGT GCCCTTTCATCGGCCCCAGCCGTGGCACCCTCACCATCACCAACTACAAGCTCTACTTCAAGGGTGGAGA TAGGGAGCCCCCATTCATTCTAGATGTACCTCTTGGTGCTGTGTATAGAGTAGAAAAGGTCGGTGGTTCT ACGAGCAGGGGAGAAAACTCATACGGCTTAGAGGTTTTCTGTAAGGATATGAGGAACTTGAGGTTTGCTC ACAAGCAAGAGAATCACTCCAGAAGACTAGTCTACGAGAAAGTACAAACCTATGCATTTCCAGTCTCAAA TAAATTGCCCTTCTTTGCCTTTGAATACAAGGAGTATTACAATGAGAATGGATGGGCAGTCTTTGATCCT GTGGCTGAGTATAAGAGACAGGGTCTACCGACTGAGAGCTGGCGAATCTCCAGAATCAATGAGAATTTTA CCTTCTGTGACACATACCCCGCTGTTCTTGCCATACCAGCAGCAGCAGATGATGAACTCCTTAGACAAGT GGCTGCTTTCAGAAGTAGGAACAGATTACCAATCATGTCATGGCTACACCCTCAGAGCCAGGCTACCATC ACAAGATGCAGTCAGCCCCTGGTTGGGGTCGGGGGTAAGAGAAGCAAAGAGGATGAGAAGTATGTCCAGA TGATCCTAGATGCCAATGCTCAGTCCCACAAACTGGTTATCATGGATGCCAGGCCGACAGTCAATGCAGT CGCAAATAAGGCTAAGGGAGGTGGTTATGAGAATGAGGACACCTACCAAAATGCTGAGATTTGCTTCTTG GATATTCATAACATACACGTCATGAGAGAGAGCTTACGTAAGCTGAAGGATATCTGTTTTCCTAGCATCG ATGAGCATCATTGGCTTGCTAACCTAGAAGCTACACACTGGTTGGAACATGTTAAGATGGTTTTAGCCGG CGCTGTCCGAATCGCTGAGCGTGTGGAGGGCCAGAAGACGTCCGTGGTGGTCCATTGCAGTGATGGTTGG GACAGGACGGCCCAGCTGACAGCCCTGGCCATGCTACTTCTAGATCCTTACTATCGTACCATCAGGGGCT TTGAGGTGCTCATTGAGAAGGAATGGTTAGCTTGTGGACACAAGATGGCACAGCGTCATGGGCATGGAGA CAAGAACTACACAGATGCAGACAGGTCTCCCATCTTCCAGCAATTCATTGACTGTGTATGGCAGGTCACA AGACAGTTCCCTAATGCTTTTGAATTCAACGAACATTTCCTGATCACCATACTGGACCACCTGTACAGCT GTCTCTTTGGAACGTTCCTCTTTAACTGTGAGAGGGAAAGAGTTAAGGAGCAAGTGAAGACGAAGACCGT TTCCCTCTGGTCCTACATCAACAGCAGCATGGAAGAGTTCATCAACCCCATGTATGCCAGCTACATGCAT CAACATGTGCTCTTCCCCGTGGCCAGCATGAGGAGGATTGAACTGTGGACTTCCTACTACATCAGATGGA ACCCCAGGATGAAACCACAGGAGCCAGTACACCAGAGGAACAAGGAGCTCCTGGAGCTGAGAACCCAGCT CCAGCGACAGGTGGAGGAGCTACAGAAGGAGATTGAGGCCAGGGATCTAGGACTCCAGTCCACTCCAGGT GGAACGGCCTCGCCCCCAAAGATCACAAGTCCTGTCAATGCCTAAGGGTTAGGGTTGATCCAACACATGC TCCAGCAACATTTGCTCCTGGCTTAATTTTTCTAAGGTGCAGTCAAACCTGCTTTAGTGACCACCTGTCT ACAAAGACTACATTTGTTGTTTCCCTTGAAAATGGTTTCTCATTGAAACATGCACTGAAGGAACCTGTCT ACAAAGACCATTTTTTGTGTTTCCCTTGGGTGGTCGCTATAGACAGGTTTGACTGTATAGGGCTTCAGGG TAGTGATTGGGTTTAGTTTTGTTTCATGCTAAGGGTTAAGGATACATATAATGATGGGACCAGGGTTAAA ATGAGAAATGCTTTTACTGTTAGAAATTGACCACTGAGCAATTGTGGCTAGAGCAACTGTCGTACAACCG GTTTCAACTTGTCCTCAAGAGATAAACTCTTTTCACAGTCTCTGTTCATGTATAAAAAAGCTATAGCCAT ACATCTTCTTGTTCAGATTATTTGTGTGTATCATTTGTACGATGTCTCAGGTTTTACCTTCAGAATATAT TTAAGTCCTTTAGGAAACAGAAAGCTGTTACGAAAACCTGTTGTTCAATTGAAAAGAATATGTGCTACAG TAAATAGTGAAGGTTGTACATGAGAAGTCAAACGAAACCAATGTTTCATTTCATAAGCCTTTACTGGTTT GTGTATTGTTCCATTGAAGTAGATGTTTGGGCAAACCTGGGAGTTTGTGTTTGAAATTGGAACTCTTGCG TCTTGGATCAGCTTCAATATTAAGCAGGTTTGAAGATGTACCTCTCGATGGAAACAGAGAGTCGATCATT ATCAAAGGTGAGGAAAGGGGTTTATCCAAAATGCTACCCCAATTTTCTATCTTATGAGGCAAAGCAAGCA AATTGCAAACTTGTACATAAACTTTTCCATATTTCATTATGCTACAGCAAAATTGTGCATGTGTGCAAAC TAGCGTCTTAGGTTCTTTTTGTCACTATCTTGCAATATGTGCGAGACTTTTAAGATTTCTACTTTTAATT TTGTCATATATGTCATATCCAAGCTTTGTGATGTAAATGATTAATGCCTTTATAGAAAAAAATACAAACA TAGTTATTTGGAGATTCACTTATTGTGGAAAGACAATTTATATCTGTAATAGATGTTGTTTAATTGGAGT TTGAGGTATCAACTAACGGTATCTAATACCATACTGTATACATCTTCCATTATGTATAGTTATTGCTAAG CCAGACATACCCTAGCAGTGCCCTAGTTGCACCCAGAGGTTCTTAATCTTTGCACCAACGATGACATTAT CTGTCCGATCATGTTGATGTGTCCATGTAGGTCCCTTCTTTGTATTAGATGTGCAGTATTTTAATCATAG ACCGAGAAGAAAATTTAGGTCCATAGAATTCTTTGAGCTTGATCTCTATCAAAAGTGTTACCTCTAATTT TCGCCGACTACGGAACTTAGTTTCTTTCAGAACCTCAATCTTCTAGTTCATCTACTGTTTAAGCAAGGAA TTATGTTCCCTTTTTTTAGCATTTTGGGCATCAAATTAATTGCACTTATTGATAGTTATTTCAGAGAATT TGTGCTTGTAATGATATTAGTGAGTATGATTTATATTCATGTATCCAAATTAATGTAAAAGTATTTATTT ATCTGTGACTTTGTATACATGCATGTTCATGATGAACTCTTTTTGTTACATATATATACTTCAACATTTT GTATTTCCTTTTTTTTCATGTAACAACACATATGTAGAATGTTGGGTTCTTAACTTATGATAAAAGCAGT AAATCAGTTGAAGGTGATTGTACATATGCACCTTGTTAATGTTATGTGCAATATAAATTAACTCTTCTTT ACGCTTTTAGACCCCAAAGCAGACCGCAAAGGACCTTGTACCATTCATATACAGTGCGACCCAGAAAAAA ATGAAACCGAGAATTATAGATGAGTTATCATAACTTAATCACAATTTTGATTAATGAATTACGCATGAGT GATTAAAAACAATTTGAAGAAAGGGTACCATCATTTTCTGCCCATTCATAAGACTCCTAAATGGTGGAAA AAGAGCCAGGAATATTTCCGTTTGCTTGAATTTTCATAACTTCGTGTATGGCTGATCGTCACCGAAACAG AGTTTGTTGCTAATTTGTTATTCCTGGCTCATTTTCTCTGATTGAGAAGTCGTATGAAAGGGCAGAAAAT GAACTTTCTCGAAATGCCTTTTTGATACCCTTTCTTTAAAATGTTTTTAATCGTGAATGGATGTATTTTT TTTACTATGAATGGTAAAAGGGTGTAAGAGACAGAAATACTAAAACAAGGAATTTCAATAAGAATTCTTT ATTATCAAGGTATTAATGTACATCAAACGCCCTTCAACTTTCCAGCTCGAGAATGGCATAGCGTATTGCT AAATGAGTGGAGAGTGCAATCCCTGGCAATACACCAGTTTACGGTTATGGGTGCCATCCTGGTTTACGCG TAAACTGACTCTAGAGGTCGGGGGTTTGTTTACCCTCAAGTTAAAATGGCGCGAGCAAATCATTTGTGTA CGATTACAAATTCATGTTGACTTTTGTATACACCATATCATAAAATAAATTATTTTTTAATTACTTTTGT TCTACCTGCTAAGCTCCACCCCAAAAAAACCCTCCAAAAGCAAATGACTTTTGTCGGCTAGATGAACAAA AGACCTTATTGCACGTTTTCATACAATAGCTGATTGAAACCCTTTTCTTCATGTTGTTGCTTGGCACTAT GTTTGAGGCAGTTGATGGGAAGGGACATACAAATTTCTTTTGTTCATCTAGCTGACTGGCATGATGTCAC AAAAGTCATTTGCTTTTGGAGGTTTTTTTTTTACGGGTAGAGCTTAGCAGATAGAACAAAAATGACATTA AAGATCAACATGAATTTTTGAATGGAACAATTCATATTGCTGCACTTCACAGTAATTAACTTTGATTATA CACATGTACTTATTACAATAAAACATGGTTCAAATAATTAAATACATGATTACATTTAACTCTTATCATT ACAGAATTAATACATCTTTGGTCCGATGCTTTTCAAATTAAAAATGGATATGATTTCATCTCAAACTTCA AGCACTGCATGTCTCGTGTCTGTAAATGTGTAAATTCTAATGAATGTGAAACATTTGTACATTTGTAGAA TAGAACACTTCATGATCCAACAATAAAATGCTACGATGGAATTGGAATATCACTGTCTAATATCTAGTAT TTCATTGCCTTATATGGATGTGTCAATAAGCCACTTGTACAAATGGCCCCCATGAATATTGCCCTCTTGA AAAGAATACTTCCACCTGCGTATACATAATGAATGATTACATAAATGCAGACCAGCAGTCATCTCAATGG GTTGTACAAGTGTCTGCCCAGTGTCACTGGAATGGCTTATTATTGGGGTTGTGTGTCCCAGTTTGATACC AAAATCAAATTCTACCAAGTACCAACATATACATTCTATATGAAATTGACAGTTCATGAAGATCTAATTA AAGTATATATACATTAAATGAATGTTTATAAAAGATAAAATTGAGTTCTGGTCATGCGATTGCATCATGA AAGAAACTGGAGTGTGGAGGTAATTACTCGTCTTATTTCAAATATGAGGACATATTTCAGTAGACATTTT TTTTTTTAATGTAAGGAAGGTAGCTCACATCTTTTTTTCCCCAGAACTCAACCTTCTCTTGAAACACATG CCAACCTGATTATTCAATTTCATGAAGGGGGGGGGGGCCATAACTATTATCTCTCCAAAGAAAATACACC ACAAATATCAATTTTAGCACTTTGAGTTGTCACTTTGAACTGGTGGATTGAGGAATGCATAGACAAGAAC TGCATTGACATTAAAAAATGGCACAAAATAGACATATTTCTCAATTCTTCGCAGCATATTATGTACATGG ATATTCAATAATTAATTTTCAAAAAATTAACAAAATCTGTTTCTTCATAATCAGAAGTCATTTAGTAAAT CACATATTTCAGTTTAATTCATAGTAGGAGCAATAATTTATAGGCCTCTTTTTTTTTAAATCTCAAAATA GTGTACATATCTAGCCAGAAACATTTGCCAGTAGTAAATCAAATTCCACATTGATAAATGATAAGATTTG AAACTAACATTGTGATTCTGGCAGGGCACTTTCATTACATATAAATTTATCTTTCATGTGTAGTACAAGA TCTCATACCAATGTTACATGGACATCGCCATAATTTTTGCCCCAACTTAAAGGTATGACCCAGAAGTACT TCGCAGCCTTTGGTAGTGCCTGTTCTGTCGGGTTAAAGGTGAAGTTTGAGTTTCAGATTATAAATTCAGT CTGGCCATGACCATCCGTTTCACGTCGACACCAGCGTAGGTAACGAGAGCGAAGTGGGCTATACCGCCTA CAGACATTGCCATGAGGAGCTTCAAGGCATTTACGCAGACACCAAAACCAAAGAGTCTGTTCGGAGAAAG TACAGAAAACATAGACATGATGGGCTACACGCTTGAT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds