Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041626857.1 PREDICTED: Lytechinus variegatus disks large homolog 1-like (LOC121429694), transcript variant X2, mRNA TCTCCTGGACATTGTTTGATTTGGTTCTTCAGGAAAAGCTCTACTAGAAAAGAGGAATCAAGGTCTTGTC TGAAAGCTCATCAGTTATTATAAAAGTTGATTTCTGTGCTTATTTCATTTATGAATAACTTTAGAATTGA AGCATCGCTTATACCATATTTTGCGGAATATAAAGGATATATATAATTCCATATAAACTATCGTCTTGGA TTCACGAAGATCAAGCAGTGTATTTCATCATGTGGAGCGCAACACTAGATAATCGCGGGAGTGTCCACAC ACGTGTGGTTCACAGCCCCGAATCGCAGCCCGGAGCATGGTTTCCCTGCGAGTGCGTCATGAGCTTGTTC GGCTGCAAGAAGGATAAAAATCAATACCATTATCCAGATGACTCAGTCCCTCCAACAGATGGCAACCCCC GCCTAGTACCAGTGGTAGGGTCCCACGTCGAACAGCCTAAGGAAAACACACAGAGCTATGTGGCACAGTC CACTGTATCACCAGCAGAGCCCTCACCTTCATCACCAGTGTTATCAGACAGATTAGAGGGAACAGGGACA CCGACAATACAAAATAGAGAGACTCAGTGGCAATATGAGGAAATCACATTAGTACGGGGTGGGGCGGGCT TAGGTTTCAGCATCGCAGGGGGCACGGACAACCCCCACATAGGAGAAGATCCTAGTATCTTCATCACCAA ACTTATTCCAGGGGGTGCAGCAGCAGTTGATGGAAGACTCAAAGTCAACGATGTGATATGCAAAGTGAAC GAATGTGAGATCCTCGGTGTCTCACATCAGCAGGCAGTCGACGCACTCAAGAGGGCGGGCAACACGGTAC ACATGGTCGTAAGGAGATGGCCTAGGAATCCTTCCACCGGTAAAACACTGACCATCGAGCTTATCAAAGG TCAAAAGGGGCTGGGCTTCAGCATCGCAGGGGGTCAGGGTAACCAGCACGTCCCCGGAGACAATGGTATC TTCGTCACCAAGATCATCGACGGTGGTGCCGCCGAGCAGGATGGGAGGTTGCAGGTCGGCGATAAGATCA CAGCGGTTGGCGATAACAACCTGGTAGATGTGACCCACGAGGAGGCGGTCGCCGCCTTGAAAGCCACCAG CAACAGGGTGCTCCTAACGGTCATCAAGAACGCAACTCTCCTCGCTGGGACACAGATGGCGCCCTACACG CAGAATGACGAGAGCGTCCAGCCCCCTGATGTGTCCAATGTCGACATGGCACCATCGGTCCCAGTTTATG CAACGATGCAGCCCACCCTCATGCAAGAGCCGCAGCCCGCCGGCCTCCAAGAGATCGACGGCGCCAACGG GGCAAACGGAGCTAATGGGGAACCCCCATCGTACAACAGAGCAACAAACTCACAACCACCAAACGCCTTC AACAACACCCACGCTCCAAAGATCTTCATTCAAAACGACGATGGCATTCCGAGGGAGCCCAGAACGGTCG TCCTTAACAAGGGAGCGACAGGCCTTGGATTCAACATTGTCGGAGGAGAGGATGGAGAGGGCATCTTCAT CTCATTCATCTTAGCCGGAGGGGTAGCAGATCTCAGCGGTGCTCTAAGGAGGGGGGATCAAATCCTTTCG GTAAATGGCAAAGACCTCGTCAATGCAACGCATGAAGATGCTGCGTTAGCGCTGAAGGGAGCCGGCCAAG TGGTTACAATAGAAGCACAATATAAACCAGAAGAATACAACTGTTTTGAAGCAAAGATCCAATCATTGCG TGAGGAGATGATGCAAAACTCTGTTAGTCCCACAGGAAGTCTTAGGACGTCGGCTAAGAGGACATTATTT GTCAGGACTCTGTTTGACTATGATAAGAATAGGGACAGTGGTCTACCCAGTCAAGGCCTTAGCTTTGACT TTGGTGACATCATCCACGTGACCAACGCCAGCGACGACGAGTGGTGGCAGGCACGTCACATTCTTCCCAA CGGAGAGGAGGGAGAAATCGGCATCATTCCAAGCAAGAGGAGAGTGGAGAGGAAAGAGAAGGCTAGGTTA CGGAGTGTCAAATTCACGGGTAACAAAGGAGGGAGCAACAACATCACTGAGCCGCCCGGAACTGTGAATA GCAAAGGCAAAAAGGGTTTCTTCAGGAAGTTCAAGAAGAATAGGGACAGTGATCAGGAGACAAGCGACCC AGAACTGTCATCTTCAGTAATAGTATCAACATCTTCACAACCAGCTTTCACATCCAATGCCAGTGATAGC GAAAGTAGCTACAGGAATGAGGAAATAATTCTCTCATATGAAGCAGTCGTCCAACAAGAAATTAAATACA CAAGGCCTGTCATCATTCTTGGACCTGGTAAAGACAGGGTTAACGATGATCTCATCTCGGAAATGCCCGA TGAGTTCGGAAGCTGTGTACCACATACAACGAGAGCGAGGAGACCTCACGAGGTCGACGGTCGGGATTAC CATTTTGTAGAATCCAGGGAACAGATGGAGAAAGACATCCAGAATCATCTATTCATCGAAGCCGGTCAGT ACAACGAAAATCTCTATGGCACCAGTGTGGCATCCGTCAAGGAGGTTTCAGAAAAGGGCAAACACTGTAT CCTAGACGTAAGCGGCAACGCCATCAAACGCCTCCAGGTGGCCCAACTCTACCCCATCGCCATCTTCCTC AAGCCCAAGTCAATAGAATCCATCATCGAGATGAACAGGAGGGTCTCGGAGGATCAGGCGAGGAAGACGT ACGAGAGGGCGCTCAAACTGGAACAAGAGTTCCTGGAATACTTCACAGCAATCGTTTTGGGAGACACCAT AGATGACATATACCAACAAGTCAAGGAGATCATCCACGAACAATCCGGCCCGACGATCTGGATCCCAGCG AAAGAAAAACTGTGAAAACGGCTACCTTCTCTTACCGGAATCACAACATGAATTACCAAATTTGTATATG TCAAGAGAAGAAAAAAGACATTTTGACAACATTGCACAGCCATGTTGGATATTAGAGATATTTTTTGTAC AGAAAAGTTTTAATCGTCATGGAATATTTGGGGAGGAATTGTATGTTACAATTACTTAACCCCCTCTGAG TTTTATACGCAAGATGTCTCCGTTTCTACCCTGGTAGGAGTCCATTAGGGTGCGGTACCGGAATCTGATC CGCCCTATACCAAGAATGCGCTCAGAAGGAGATCATAGTTTACGTTATCGGACGTTTTCACCTTTTTTGA AGTATTTTTGGAAGTATTTGTTGTTTTTCCCCCCACATTCTCAGCCTGTTCAATCGGAGTGAAAAATCAC ACTTTTGTCATGAAATTTGTGAACATATTTTTTGAAACGTATGATGGTGAAATTACTCTCCTTGTTTTTG TATTGCCATTTTGCAAGAAAAAAAAGATATATTAGTAAATATATATATATTATGCCTAAGTATATACAGT ATACTCACTTATAAAGGTGCAAGATTTCATTGTAGTTTGATTGATGCAGCTTACAAAAAAAAGTGATGAA AATTAATTGGTCCCTATGCGTGCAAATTCCCGAAATGTATTAGAATTCAATTGAAATTTTTTAGACCGAT ATCCTCCATCTTTTAATAGTAAATACCTGTAGTTTGAGGTTATGATCGTGTCAAATCTTTGGCCTGAGTG TGATAAGATTTGGTTTCCTAGGGAATTGTCTGTTGTGTGCCCTTCACAGATTATGAATAAATCAATCTAT ATTTGCATTTTTTTTTACTTTTATTATTTGATAATGATTTAGGAGAATAGTAAAGTAATGACATGTTGTT ACTTGTACCGTAATTCTATCATGATGTATGATACAATCTTTTATGTGGACCAAATACTAATCATGAGTAA CATTTGTTTTTGTTTTTTGTTCTGTTTATTTAATCGTTGATGGCAACTCTGTGCAAAAAAGCTTTCCGAG ATTTCTTCGAATAAGAATCATTCTTACTCTTTTCTTTCTTTCTCTCTTGAATTCCCCTTTCTTACATTCT CTGTCTCCCCCTCCCCCACCTATTCTGTGTACTTTTCTATCTCTGTCACTGTCTCCCTCCTCTCTCTTTC TCCCTCTCCTTCCCCCTCCCCTTGATATCTCTGTACCCTACCATATCCTCTGTCCATACCCCCCCCCTTC CTTCTTCGCCTCTCTCCTGTCTGCCCTTATCTTTGACCCAACTTGTAGAAAGGAAATGTTATTCACAAAT TCCTTATTTTCATTCTAAAACTTATAGATTTCTGGGCACAACGTTGAGTACAGGTACTATGACTCATACA TCATTAGAATTGCCACCCCCCCCTATGCAAGATCCCTGGATTATCAAAAAACATGATTTTCCATCTTACA ATCAGTGTAACTGAGCCAAATTTTACCTTTTGGCAGAAAGTTTAATTTTATTCACTTAGGGCAGTCTAGA TCGAGACAAATTAATGTTCACATCGTAAATTCTGAAACCAAAGTGAAAGCATATATAACATGGCTATATA TCAAGTGTACATCGTGCATGTATAAACCCATACCTTTGTCATATGTATGTACATGTGTTCATATTGACAT ACTGTTTAATACAGAAAGCATAATATGGTGCTATATATGTACATCTGTTCTGTTACAAGCAGTCCCATGG CTTTCAAATGTGTTGTACGATCATTGCAAAGGTATCAATTGTGTGTATTCAAATACATATAAAAATCCCC AAGTATAATGGTTCCTAGATTGCACTTATGAGTTTGATACAAATTATTTGGTTTGATAACCTTGGTTAGC CAAAGCAATTCGAGCTGCATGGCCTCTTAATTCTTGTTATTTTTGGTTTAAAGAACATTTGATTTGCCAA ATATTGTTATAATACTCAAGAATCGGGCACATTAGACCTCAATGAATGATGACATTGGGTTCTGCTGTTC GGCAATATATCACATCTTTTATATTGTTCATTTCAGACAACAAAGCTGTCTCGTAGTGTTTGAGAGTCGG TAAAAGAGAGCTATAGTGCCCGTAATAGTACATTGTAGGTATATCACAAAGAGTAAATAAAGAGGATTTG TATAGCGCACATGTCCACCTTGCTAGGTGCTCAAGGCGCTCCTATATTACCCCGGCTAAACTAGTCTACC GATTCTGGTGCGCACAGCTTTTTGAGGAATTACTTCCTGCCGGTACCCATTTACCTCACCTGGGTCGAGT GCAGCGCAGTGTGGATAAATTTCTAGCTGAAGGAAAACACGCCATGGCTAGGATTTGAACCCACGACCCT CTGTTTGAAAGGTGAGAGTCAGAACCAGTAGACCACGACGCGCCCACAGTTAAGTGCATCTTAAAATTGC ACTTGACTTCCCAGTTTTGTGTGGTATTTGTTGATGGCTCTTATCCGTTGGCACTTAACCATGACTTAAC ATATTCTTTGTGAACCACCCAAATGGTGTTTTTTCATGCGCAGTAATGGCCACTATTAAAGCATGACTTT ATGTCATAGATATGGATCTTGTGAAACCACACCCAGGTGGGTGTCGATACTCGAATATGGAAAATATCCT CAAACTTTTGATGTAGATTTATTCGCACACATCACTTCCATTTGGATTGAAAGAAGGTTTTAATTAGAGA AGTGTTGACATAAAGAGCATTTGTAGAGGTACAAATTTGCCACTAAGCATGACTTTATGTCATACATGTA CTTCCATATTTTGTGAAACCACACTCAGGTGGGTGTCGATAGTCGAATATGGAAAATATCCTCAAACTTT TGATGTAGATTTATTTGATTACATCAGTTCCAGTTAGATTTTAAGCAAGTCTTAATCAGAGAATGGCTTG AATGTATGGAATTAGGTGCATGTGTGAAGAATTTGGCCCCTCTCATTTTCCAGTATACAAGTTTTTCTTG GAAGTCGGAATAAAGAGTTAAAGCAATGACACAATCTAATTGGGCACTATATTACTCAAGAAAATTCAAG CATCTTACTTTGGAGAATGCGGATTCTTATTAAAGAAATTTCTGAAAGGAAGGCGTTCAAGCTTTCCCAT ATTTCACTGAAATGTATTTTGCTTTGCATAACATTTGATTCTTTTGTTTCACTCTGCAGAAAAAATGTCA AAAAGCCAGCTTTCATTTGCTGTAAATATTTGGAAATGAACGTGCACTAGTTATCAATTATTCAAGGCAT TTATACAAGCAAGCACTTGGTTTTGTTTCACATTTTCTCATTCTCAACCACCACACATTTTTCTTATTTC TTGTTATTCCCTCAATAATTTATATTTCTAAGGGTAGTGCGTAATTTGGGGATATATTTGAATGTGAGAT GTACAATTTTGACAATGTTCAGGACATCAAAAAAGATTGTATGGGAGTAAGTCAAATCTTGTGATTATTT TTTCTTTATGCTTTTATCTTATCAAGTCACATATTTAACTACTCTATAAATGTGCTGTTAACAACATTCA TAAAAAAAGGATATATTAAAAACATTTTAGATTTAAAAATCGATGATAAATAATGCTCACCAAGTTTTGC GTTTTTTATCAAATAGATGTGCAAGCAACAAAAGGGGGGGAATAATTTTCTCATAAATCTTTGATTAAAA AAAGTTGATAGAATATATTGAATTCAGCCTTTATATCTGCCCTAAATCTTGTCTTATGTCCAATATTCTG GATCTCTCTAAGATGAATTTTGCTGTTTTTTGCAGTTTTAGGTGATGGAAAATAATAATTGTGTGTGCCC CCTCATTCGCTAAAAAAAAATATATTTTGTGTTGGGATCGTTGATGTACATGTAGACACTCCCTTTTATG CACGAAGCATTTCAAAGATTACGATAACATGACTGCCATTAAGTGCCCCGCAGATGTTATATATTATGTA CTTATCAATATTTCATGTACGTTTGACTTTTTATTTTATTTTTCTTTTATTTTTTGTCTCTTTCCATTTT TCCAGATATACAATGTGTATGGGAGTTGTAGCACATGTCAAAAGAGAGTGAGAGAAAAAAATGACACAAA AGATTGTGATTGTATATTCATCATATGTTGATATTTAATTACTAGCATGCAAATGAAGAATTATATGTTA TGTAGTCATTTATGATTATTGTATAATGTTTCTTTCTTTCCAAGGAAGGTTAAGTGTTGTACAAATAAAA AGTAGACATTTTGAAATAAACTCAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
