Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041626858.1 PREDICTED: Lytechinus variegatus disks large homolog 1-like (LOC121429694), transcript variant X3, mRNA CCTGGACATTGTTTGATTTGGTTCTTCAGGAAAAGCTCTACTAGAAAAGAGGAATCAAGGTCTTGTCTGA AAGCTCATCAGTTATTATAAAAGTTGATTTCTGTGCTTATTTCATTTATGAATAACTTTAGAATTGAAGC ATCGCTTATACCATATTTTGCGGAATATAAAGGATATATATAATTCCATATAAACTATCGTCTTGGATTC ACGAAGATCAAGCAGTGTATTTCATCATGTGGAGCGCAACACTAGATAATCGCGGGAGTGTCCACACACG TGTGGTTCACAGCCCCGAATCGCAGCCCGGAGCATGGTTTCCCTGCGAGTGCGTCATGAGCTTGTTCGGC TGCAAGAAGGATAAAAATCAATACCATTATCCAGATGACTCAGTCCCTCCAACAGATGGCAACCCCCGCC TAGTACCAGTGGTAGGGTCCCACGTCGAACAGCCTAAGGAAAACACACAGAGCTATGTGGCACAGTCCAC TGTATCACCAGCAGAGCAGCCCTCACCTTCATCACCAGTGTTATCAGACAGATTAGAGGGAACAGGGACA CCGACAATACAAAATAGAGAGACTCAGTGGCAATATGAGGAAATCACATTAGTACGGGGTGGGGCGGGCT TAGGTTTCAGCATCGCAGGGGGCACGGACAACCCCCACATAGGAGAAGATCCTAGTATCTTCATCACCAA ACTTATTCCAGGGGGTGCAGCAGCAGTTGATGGAAGACTCAAAGTCAACGATGTGATATGCAAAGTGAAC GAATGTGAGATCCTCGGTGTCTCACATCAGCAGGCAGTCGACGCACTCAAGAGGGCGGGCAACACGGTAC ACATGGTCGTAAGGAGATGGCCTAGGAATCCTTCCACCGGTAAAACACTGACCATCGAGCTTATCAAAGG TCAAAAGGGGCTGGGCTTCAGCATCGCAGGGGGTCAGGGTAACCAGCACGTCCCCGGAGACAATGGTATC TTCGTCACCAAGATCATCGACGGTGGTGCCGCCGAGCAGGATGGGAGGTTGCAGGTCGGCGATAAGATCA CAGCGGTTGGCGATAACAACCTGGTAGATGTGACCCACGAGGAGGCGGTCGCCGCCTTGAAAGCCACCAG CAACAGGGTGCTCCTAACGGTCATCAAGAACGCAACTCTCCTCGCTGGGACACAGATGGCGCCCTACACG CAGAATGACGAGAGCGTCCAGCCCCCTGATGTGTCCAATGTCGACATGGCACCATCGGTCCCAGTTTATG CAACGATGCAGCCCACCCTCATGCAAGAGCCGCAGCCCGCCGGCCTCCAAGAGATCGACGGCGCCAACGG GGCAAACGGAGCTAATGGGGAACCCCCATCGTACAACAGAGCAACAAACTCACAACCACCAAACGCCTTC AACAACACCCACGCTCCAAAGATCTTCATTCAAAACGACGATGGCATTCCGAGGGAGCCCAGAACGGTCG TCCTTAACAAGGGAGCGACAGGCCTTGGATTCAACATTGTCGGAGGAGAGGATGGAGAGGGCATCTTCAT CTCATTCATCTTAGCCGGAGGGGTAGCAGATCTCAGCGGTGCTCTAAGGAGGGGGGATCAAATCCTTTCG GTAAATGGCAAAGACCTCGTCAATGCAACGCATGAAGATGCTGCGTTAGCGCTGAAGGGAGCCGGCCAAG TGGTTACAATAGAAGCACAATATAAACCAGAAGAATACAACTGTTTTGAAGCAAAGATCCAATCATTGCG TGAGGAGATGATGCAAAACTCTGTTAGTCCCACAGGAAGTCTTAGGACGTCGGCTAAGAGGACATTATTT GTCAGGACTCTGTTTGACTATGATAAGAATAGGGACAGTGGTCTACCCAGTCAAGGCCTTAGCTTTGACT TTGGTGACATCATCCACGTGACCAACGCCAGCGACGACGAGTGGTGGCAGGCACGTCACATTCTTCCCAA CGGAGAGGAGGGAGAAATCGGCATCATTCCAAGCAAGAGGAGAGTGGAGAGGAAAGAGAAGGCTAGGTTA CGGAGTGTCAAATTCACGGGTAACAAAGGAGGGAGCAACAACATCACTGAGCCGCCCGGAACTGTGAATA GCAAAGGCAAAAAGGGTTTCTTCAGGAAGTTCAAGAAGAATAGGGACAGTGATCAGGAGACAAGCGACCC AGAACCTTTCACATCCAATGCCAGTGATAGCGAAAGTAGCTACAGGAATGAGGAAATAATTCTCTCATAT GAAGCAGTCGTCCAACAAGAAATTAAATACACAAGGCCTGTCATCATTCTTGGACCTGGTAAAGACAGGG TTAACGATGATCTCATCTCGGAAATGCCCGATGAGTTCGGAAGCTGTGTACCACATACAACGAGAGCGAG GAGACCTCACGAGGTCGACGGTCGGGATTACCATTTTGTAGAATCCAGGGAACAGATGGAGAAAGACATC CAGAATCATCTATTCATCGAAGCCGGTCAGTACAACGAAAATCTCTATGGCACCAGTGTGGCATCCGTCA AGGAGGTTTCAGAAAAGGGCAAACACTGTATCCTAGACGTAAGCGGCAACGCCATCAAACGCCTCCAGGT GGCCCAACTCTACCCCATCGCCATCTTCCTCAAGCCCAAGTCAATAGAATCCATCATCGAGATGAACAGG AGGGTCTCGGAGGATCAGGCGAGGAAGACGTACGAGAGGGCGCTCAAACTGGAACAAGAGTTCCTGGAAT ACTTCACAGCAATCGTTTTGGGAGACACCATAGATGACATATACCAACAAGTCAAGGAGATCATCCACGA ACAATCCGGCCCGACGATCTGGATCCCAGCGAAAGAAAAACTGTGAAAACGGCTACCTTCTCTTACCGGA ATCACAACATGAATTACCAAATTTGTATATGTCAAGAGAAGAAAAAAGACATTTTGACAACATTGCACAG CCATGTTGGATATTAGAGATATTTTTTGTACAGAAAAGTTTTAATCGTCATGGAATATTTGGGGAGGAAT TGTATGTTACAATTACTTAACCCCCTCTGAGTTTTATACGCAAGATGTCTCCGTTTCTACCCTGGTAGGA GTCCATTAGGGTGCGGTACCGGAATCTGATCCGCCCTATACCAAGAATGCGCTCAGAAGGAGATCATAGT TTACGTTATCGGACGTTTTCACCTTTTTTGAAGTATTTTTGGAAGTATTTGTTGTTTTTCCCCCCACATT CTCAGCCTGTTCAATCGGAGTGAAAAATCACACTTTTGTCATGAAATTTGTGAACATATTTTTTGAAACG TATGATGGTGAAATTACTCTCCTTGTTTTTGTATTGCCATTTTGCAAGAAAAAAAAGATATATTAGTAAA TATATATATATTATGCCTAAGTATATACAGTATACTCACTTATAAAGGTGCAAGATTTCATTGTAGTTTG ATTGATGCAGCTTACAAAAAAAAGTGATGAAAATTAATTGGTCCCTATGCGTGCAAATTCCCGAAATGTA TTAGAATTCAATTGAAATTTTTTAGACCGATATCCTCCATCTTTTAATAGTAAATACCTGTAGTTTGAGG TTATGATCGTGTCAAATCTTTGGCCTGAGTGTGATAAGATTTGGTTTCCTAGGGAATTGTCTGTTGTGTG CCCTTCACAGATTATGAATAAATCAATCTATATTTGCATTTTTTTTTACTTTTATTATTTGATAATGATT TAGGAGAATAGTAAAGTAATGACATGTTGTTACTTGTACCGTAATTCTATCATGATGTATGATACAATCT TTTATGTGGACCAAATACTAATCATGAGTAACATTTGTTTTTGTTTTTTGTTCTGTTTATTTAATCGTTG ATGGCAACTCTGTGCAAAAAAGCTTTCCGAGATTTCTTCGAATAAGAATCATTCTTACTCTTTTCTTTCT TTCTCTCTTGAATTCCCCTTTCTTACATTCTCTGTCTCCCCCTCCCCCACCTATTCTGTGTACTTTTCTA TCTCTGTCACTGTCTCCCTCCTCTCTCTTTCTCCCTCTCCTTCCCCCTCCCCTTGATATCTCTGTACCCT ACCATATCCTCTGTCCATACCCCCCCCCTTCCTTCTTCGCCTCTCTCCTGTCTGCCCTTATCTTTGACCC AACTTGTAGAAAGGAAATGTTATTCACAAATTCCTTATTTTCATTCTAAAACTTATAGATTTCTGGGCAC AACGTTGAGTACAGGTACTATGACTCATACATCATTAGAATTGCCACCCCCCCCTATGCAAGATCCCTGG ATTATCAAAAAACATGATTTTCCATCTTACAATCAGTGTAACTGAGCCAAATTTTACCTTTTGGCAGAAA GTTTAATTTTATTCACTTAGGGCAGTCTAGATCGAGACAAATTAATGTTCACATCGTAAATTCTGAAACC AAAGTGAAAGCATATATAACATGGCTATATATCAAGTGTACATCGTGCATGTATAAACCCATACCTTTGT CATATGTATGTACATGTGTTCATATTGACATACTGTTTAATACAGAAAGCATAATATGGTGCTATATATG TACATCTGTTCTGTTACAAGCAGTCCCATGGCTTTCAAATGTGTTGTACGATCATTGCAAAGGTATCAAT TGTGTGTATTCAAATACATATAAAAATCCCCAAGTATAATGGTTCCTAGATTGCACTTATGAGTTTGATA CAAATTATTTGGTTTGATAACCTTGGTTAGCCAAAGCAATTCGAGCTGCATGGCCTCTTAATTCTTGTTA TTTTTGGTTTAAAGAACATTTGATTTGCCAAATATTGTTATAATACTCAAGAATCGGGCACATTAGACCT CAATGAATGATGACATTGGGTTCTGCTGTTCGGCAATATATCACATCTTTTATATTGTTCATTTCAGACA ACAAAGCTGTCTCGTAGTGTTTGAGAGTCGGTAAAAGAGAGCTATAGTGCCCGTAATAGTACATTGTAGG TATATCACAAAGAGTAAATAAAGAGGATTTGTATAGCGCACATGTCCACCTTGCTAGGTGCTCAAGGCGC TCCTATATTACCCCGGCTAAACTAGTCTACCGATTCTGGTGCGCACAGCTTTTTGAGGAATTACTTCCTG CCGGTACCCATTTACCTCACCTGGGTCGAGTGCAGCGCAGTGTGGATAAATTTCTAGCTGAAGGAAAACA CGCCATGGCTAGGATTTGAACCCACGACCCTCTGTTTGAAAGGTGAGAGTCAGAACCAGTAGACCACGAC GCGCCCACAGTTAAGTGCATCTTAAAATTGCACTTGACTTCCCAGTTTTGTGTGGTATTTGTTGATGGCT CTTATCCGTTGGCACTTAACCATGACTTAACATATTCTTTGTGAACCACCCAAATGGTGTTTTTTCATGC GCAGTAATGGCCACTATTAAAGCATGACTTTATGTCATAGATATGGATCTTGTGAAACCACACCCAGGTG GGTGTCGATACTCGAATATGGAAAATATCCTCAAACTTTTGATGTAGATTTATTCGCACACATCACTTCC ATTTGGATTGAAAGAAGGTTTTAATTAGAGAAGTGTTGACATAAAGAGCATTTGTAGAGGTACAAATTTG CCACTAAGCATGACTTTATGTCATACATGTACTTCCATATTTTGTGAAACCACACTCAGGTGGGTGTCGA TAGTCGAATATGGAAAATATCCTCAAACTTTTGATGTAGATTTATTTGATTACATCAGTTCCAGTTAGAT TTTAAGCAAGTCTTAATCAGAGAATGGCTTGAATGTATGGAATTAGGTGCATGTGTGAAGAATTTGGCCC CTCTCATTTTCCAGTATACAAGTTTTTCTTGGAAGTCGGAATAAAGAGTTAAAGCAATGACACAATCTAA TTGGGCACTATATTACTCAAGAAAATTCAAGCATCTTACTTTGGAGAATGCGGATTCTTATTAAAGAAAT TTCTGAAAGGAAGGCGTTCAAGCTTTCCCATATTTCACTGAAATGTATTTTGCTTTGCATAACATTTGAT TCTTTTGTTTCACTCTGCAGAAAAAATGTCAAAAAGCCAGCTTTCATTTGCTGTAAATATTTGGAAATGA ACGTGCACTAGTTATCAATTATTCAAGGCATTTATACAAGCAAGCACTTGGTTTTGTTTCACATTTTCTC ATTCTCAACCACCACACATTTTTCTTATTTCTTGTTATTCCCTCAATAATTTATATTTCTAAGGGTAGTG CGTAATTTGGGGATATATTTGAATGTGAGATGTACAATTTTGACAATGTTCAGGACATCAAAAAAGATTG TATGGGAGTAAGTCAAATCTTGTGATTATTTTTTCTTTATGCTTTTATCTTATCAAGTCACATATTTAAC TACTCTATAAATGTGCTGTTAACAACATTCATAAAAAAAGGATATATTAAAAACATTTTAGATTTAAAAA TCGATGATAAATAATGCTCACCAAGTTTTGCGTTTTTTATCAAATAGATGTGCAAGCAACAAAAGGGGGG GAATAATTTTCTCATAAATCTTTGATTAAAAAAAGTTGATAGAATATATTGAATTCAGCCTTTATATCTG CCCTAAATCTTGTCTTATGTCCAATATTCTGGATCTCTCTAAGATGAATTTTGCTGTTTTTTGCAGTTTT AGGTGATGGAAAATAATAATTGTGTGTGCCCCCTCATTCGCTAAAAAAAAATATATTTTGTGTTGGGATC GTTGATGTACATGTAGACACTCCCTTTTATGCACGAAGCATTTCAAAGATTACGATAACATGACTGCCAT TAAGTGCCCCGCAGATGTTATATATTATGTACTTATCAATATTTCATGTACGTTTGACTTTTTATTTTAT TTTTCTTTTATTTTTTGTCTCTTTCCATTTTTCCAGATATACAATGTGTATGGGAGTTGTAGCACATGTC AAAAGAGAGTGAGAGAAAAAAATGACACAAAAGATTGTGATTGTATATTCATCATATGTTGATATTTAAT TACTAGCATGCAAATGAAGAATTATATGTTATGTAGTCATTTATGATTATTGTATAATGTTTCTTTCTTT CCAAGGAAGGTTAAGTGTTGTACAAATAAAAAGTAGACATTTTGAAATAAACTCAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds