Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>GAWB01064497.1 TSA: Patiria miniata AMR9002.39508.0.1 transcribed RNA sequence GTGCAGCGGACACTGCCAAGCACGGGCAGTCGTCGTTGGCCTGGTTGGCGAGTGTTTCGGGCTTGTTGTC GTTCCTCTAGTCGACCGAATAAATGCTCGAAAATCTCTCCAAAATGGACGCTCTGAAGGAACAAGTGATG ATAAACCAGTTCGTACTGGCGGCCGGGTGTGCAGCGGACACTGCCAAGCACTTACTTCAAACGGCACACT GGCAATTCGAGACGGCATTAAGTATTTTCTTCCAAGAAGCACCGATACCAAACGGCCATCCACACTGCTA CAGACAAGGTGGACATTCGGTGCACGCACCGGCCAACACGCCAGCAACTCCTCCCAATTTCCCGGATTTA ATGATGGACCTTTCGAAATTGGGCACAACGGACAAATATCACGCCGGTTCCCCAACATGTATGACGTCTG CGCCAGCCCCCATGCAGCCAATAACACAGTACGGACACGGTAACAACAACCAGAAACAAATGGAGGTGGA ACCGCAGAGGTGAGACTGGCCCAAAACCGGACGGATTTGGGGGGTGGGGAAATCTGGCAGTGGAAACAAC ACGGATCATCACTTGTGGATGGAATGTTATCACCGGACAAAGATGATCGTGGAAGACAAGGAAAAGATAT CTTTCAAACGGAACTTGAATATTTGGAAACGTGCAGCTGCAGTTGTGTGCGGGTGGAGTAGGCCTAGTAC CATCGGATTATGAACTTGGAAAAATAAAGTGTGGACAGACAGCAACACTTTAGAGCAGAGGGGTGCCTAA TGGATCTGCGATGTGGAAATGATTTTCTCTATTTGTTTTTTTTTTCCCCTTTTTTTTAATGTTCAGTTCT TGTAAACACCCCAAAAGTTTTATAATTGTTCTGACGACTTTTTGGGGGAAGAATGTAGTACTTTGATGTC ACTTAGATGTTGCTTGTTTACAAAGTATGTTGTGAGCAGTGACAACTTTTAAAGTGTTTTCAACCAAAAT ATAATAACATTTGGTGATTTTGGTCTATCCCATTTTTTGGGGTGTCCCACGACATCAACTGAATGTTACA ACGGTATTTTATTGGTACAAAAGTGGCATCTGGATTCTCCATTCTCTCCTTTTTCCTCTTGTGTTAGAAC ATGTGTTTAATAGCTCCATGGTAGGAATCCCCTGGACACGTTATTTATACAGTTGTAACACTAACCATGT CTTGCAGTCAGTGCAGCGCTGCCATTTTTTTGAGGAAAGAAAATATTTGGTAGTTTTTTTTGGTCTAACT TATTGCACAAAATGTACATGTAAGATTGAAAGTTTGAAACCAGTGAGAAATGGTCAAATTTGTATAATCG TTCCTTATTAAGCTTAATTATGTTGAACAATTTTTGTATCAATTTTTGTTAACATTTTGTATGTGTACAA TTTTGTGTGTTTTAATGGTATAAATATACTAAAAAGCAGAAACAAAAAAAATGTTATTTTCCCAGCAAAA TTAGTGGAGTGCTAAAATGTTGATCCGGACTGGTTAAAAAGTTTGCCGCATTTAAATGCGGAATGTCTGT TCATTACTTACAAAGACTTTAGAAAGCTACCAAAATATGCAAACATAAATTTACCCAAAAATCATTTTAT AAAGTCCCAGCATTTCAAATATTAGTACAGTACTCATGTGAAAGTGGACAATGCTGTCCCTTGAAACTTG TATTGAATTGGAAAAAAAAACAGGAGCGCCAGGTTGTTTTTGATGGAGCCGATTGCCGATTCACTTAAGA TGCACAGAAGTAATTGAATGGTTCATGGCTATGTGACTCGCGATACAATACTTTAAGAAGAGTCACAAGA CCCTAATGTACAGTACACAGTTTCAAATGGATTCTTACAACATCAACTGAATGTGCATGGTTATGGGGTA CTGCAAACACACTTTCACACCCATGAATTTCACTGGCATTTGTACTGAAACAGTTCTTATCAACTTCTGA AACCTCAAAAAATCTACTTCTTATTGTGCATTCAGTTTATGTAAATGGCACCCGCTTTCTTGGAGTGATA CATACTTGATTCTCAGGGTTGTACATGTATTTTTGTGCACCAAGAAAACCTCGCTCAAACTGAATGCCCC TTTAACTGGAGGAGTGACCTTTAATCATCACCGCATTTTGTTCATGACTAATTCTCATGGTTTTTAAATG TGGCACTGAGCAATACCACAAGAACGGACATGTTAATTTCCAGTGTACATGTATGTGTAGGCAAACTGTA TTGAAACTTTTGTTATAACATGACATGAAGATACATTTAAAGCCTGAGATGACATTAAGTTTGTGCAGTG CATGCAGTTCAAGTAGAATGATTTTCTTTTCATTCAGTCCACTGGCATTTATTCCCCTTTATTCTATACA AATTTTGTGGCTAGCAGTACAGCTGCGCAGGCTTATACAAGTTACAAGTGCACTACCTTTTCAGGTCAGG CACGGAGTACAGCACATGACCTTTAGCATGTTATTGTAAGCTTAATACTTGTCCCATTGTGAAGCAAGCA TATGATTGACAAATGTCTGGTTCTCGGCTTAACCTTAAAAGCAAGTTTCTTTGAATGCTTGAATTCTTAA CGAAATGATGTGCTCACATAACTCAATGCACATTAGTCTAATATTAGACACTTCAGTTTTCTTTTTCTTA CAAAATCTTGCAATCACTGTTTGTAACGAAAAACGGTCCACTTTCCTGAGTTCATATTATCAGTTTAATC TGGTACATGCGTTTGATAGTGTTGCCTGAATGAAGAGACAGTAACATCAACTAACCTTAATCGAATGATC AAGTGGAAATTGTGTTTAGTCTACAGACTGGGCAAAATTAAGTTAGAAAAAAAATTGCTAGCATTATGCC TAAAAATAATTTCTTAATGTGGAGGAATAAACTTGTATTTTTTACCAAAACATATTTAGGGTGATATTAA AGGGAACATTTGTTTACATTTTTTCCTTTAAAAAGTACAGTTGTACGAGTAAAACGATGAGTAATATTAA CATGTTTTGTATGATTTTGTAATAAATGTGACGGCCCTTTTGTTCCATGTATACACTAGTGTAAGGTCCC CCCAAATTAATTAAATGCCTTTGAACAAATCTAAAACTGTATTTTGTAAATGTGATGTTATTTTGTATAG GTTTTGTTTTACCAAAAAATTTTTTTTGTACGAAATTTAATTGCTGCAAGATGCTGCAACTCTACGCACA TTCTGGATATTATTTTCTTTTTCCCCCAAAACTAATATTTCTCCAGACATTGGATTTAGGAAAATTAATA AGAACCAGTGGAACTAGGAATCACGTAGTTGTATAGCAGTAGTATTACTTTGTGCAATTTAGCAAGTGTG TGTGTATTTTCCTTCGATCGTTTTTGAGGTTGGTTCACCACTCCTTTCTTCGGAGAAAAAAAAGTTAAGC TTATTGACTTTAATTCTTTCTTTAAATCTGCAGGCAAATTTAGATTTAATATTCCATGAGTCTTATGGGT TATCCTAGAATACTCTATCTTGTGGCTAAATCATCTTTTAACATGAATATGTTTGTGAGGGAGTTTTATT ATGTTTTGTACTCGGCAACGTTGATTAATTTGCAGGAATGATGCTAAAGTACGACTGTGCTTTGTTCTAG TTCAGTGTTACCTGAACAATATTAACAGTAGCGTGGATAAATAAATGAAGAACGCGTAAATGGTACTTGG AATTGAGAATTTGTCCAAAAAAATGTGTTGCATGTGATAATAAACACTAAAATGTCTATTTTCCCATTAC CCTGAGGTAGCTAAATTGAAGTTTGAAATTCAGTGCCTACTCAAATACTATTGTATTTAACTCGCGGTAT CTCCCACTGAAATTGAATACAGTGTAAGTACAATACATGATTGTTCATTATAGCATGGAGTGCCCCTATC TTGGTCGTAATATTTTGTTAGTTTGACCTTGGTAGTATTCTACTGCTATCTGGTTTGTTACATAACAAGC AGTTACGCAAACTGGCCCATGATAGCGAAGCATAAGGATCAACAACTCTCCTACTGGAGGTGGAAAATGT AATTTCATGAAAAATATGTCAGTAGTAATATTGTTTGTATAATATTACAAGATTAATTTTAGTCTAACAC GAGCTACCTCCGCTGCCGCATATAATCATTGGTTATTTTAATTGTTGATCAATTGTGTAAATACAAAGGG CTCAATAATTATTGTAATACTACATGTGAAAAAAAACATTCATAAATAATGTCAAGGTATAGGTGAATTT TCCATATTTGTTATGAAGGGAATTCACTTGTCATATTTGAGATCGGTGACAGTTTTGTTCAATATTGTGG TTATTTTCGTTCAACTGTTATGAAATGCTAAACGGGCAGTACACGTGACTATGCACACCTTTGCTTGTGA ATGCGTTGCCCTGCACCCGTACGACTCGTGCTTTGTGTCTTATAAGTTACGTTTGTTTGCGCGTTGGTTG GAGATGAAATTGAGATTATACAACTGTACTGGTATAGGCTTGCTCTATAGGTAACCACTTTGGAGACAAG CTTCACTAATGTGTTTTCCATAAATGGATCTTTGCTTGTTTTGAAAATTCTTTAAAGATTCATTCAAAAT CCATTTACTTTAGAGAGTACCAAAATAATATCTGCATATTGACCTACGTTTGAGTGAGGAAAATGGTTTT TTCTGCGAAATGTTTTCACTGTAAAACAGCACACAATCAAGTAATGTGCTGCGAACCTACGTGGGTAAAT AAACATATAGCATTTCACTGGCATGCATAGTTGTGCGACGTCGCTAAGTTAATGCTATTTGATAATTTTA GAATTATGAACTTCCATTATATAAAGCCGTGTAAATGTTTCAAGCTTTAAATGTATACTATACTGTGACT TTTCTCTTGTGTAAAGGTACAGTAGGTTTATATATTAGTTGTATATGTACATATAATAATAAAACTGAGG ATTAAAT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds