Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041624753.1 PREDICTED: Lytechinus variegatus uncharacterized LOC121428159 (LOC121428159), mRNA AGGCGGTGTCGACGAAATCTTGACTCAGGAGTCATAAGGAAAAGTTCATCATCATCATCTTCATCGTCGT CGTCATCATTCTATACCAAACTCTAGTATGGGAGGACCTGAAGGGTCAAACGACACCGAAAAGCAAAACG GAAATGACACTGCTTCGCAGACACCGACAAAACCAAACCCGGTGAGCATGGTGAAAGTCAAAATCGAAGT TGACGACGACGATGATGACCACGAAAGGGGTGTCCGGGTTGACGTCGAGAATAGCAGACAGAAAGACTTG AAAGCGATGCTGACGTCGGATGAGAAGACGAGATCGATTCCGAAGAGGGAGACGGATGATGCTGTCGGCA ATGTCGGACGAGTTAGTACTCGAAGGAATTCGGACAATGCAGCAGGCGACAATGGAATGATTTCAGCAGG AGCGATAGAGAACGAAGAAAATGGATCGGACGATCTTAATCATGATCGATATTCACCGTTCGATGGGATG TGTGAAAACTCCGAGAGCGATTTCTTTAGCCCGATCCAGGACCAGAGCGGCAACGTGATACTTGAAGTGG CCTGTGGATCAAACAATGCCTTACTTTACGTCAATAAGCTCTGTCAGGGATCCAAGGGGCAGTGCATTTT CTTCGAGGAGCGGTGGTACACGCCCAACGAGTTCCAGTTTATCAGCGGGAGAGAGACGGCGAAGGATTGG AAGAGGAGCATCCGACATCGCGGCAAGAGTCTAAAGATTCTGATGGGGCGTGGTCTTCTCATGGCTCATC CGCTCATGTGCGAGTGCGACACATGCCGACTTAATTTCGCTTCTAAAGGATTGCGATCTGGTGATCGACG AGGAGCAATGACGACATCATCGTCCAGTTCCAACGGATCGTCATCGATGGTTGACAGGTCGAGACTTCGA CGTGTTACAGGACCAGATGGCGAGGGTGGTCATCTCAACGAAATCATCGACCAGCTCCAGCATAGCAACA ACAATGGCTACTCTAATGGAAGCCACAACCACGCGTACGACAGCGGTCGTAAGCGATCTCACGGCGTCGA TAATCCGAGCCCGACGGGGTCCAGCCCGTCGTCAATGCCGTGCGGGCTTGCGTTGGTGAAGCGACCGCGG AGCGTCTCGCCGAGAGACGATGATATCTATGACGAACAGCAACGGAAGATATTCGAAGCCGCGAACTCGC CAGAGCCTCAGAATATAGAAAATCTTCGTCGTTCACTCAACTTGAGTTCAAGCCGCTCCAACTCCCCATC AAACAGCGACCACCACCAGTCTCCCGGCACCGGATCACATCCCGCGTTCTACGGTAGCCATGGCAACGGA CGAAATGCCCCAACCGTAATGGTCGCGGCATCAATAAACAACAGCAACACTACTTTGCTAACAAACGGTT CGGGGCCCGCAGATCTCAGCCGCCACTCGTCCGCTTCGCCGCAGAGCGCCACATCGACGCGGCTATTACT TTCACAACCGCCTCAGATGATAGTGAAACATCAGACGAAATCCCGCAAGCAGACTGCACCGCAGCACCTA GACGTCGGTAACCACGGAGACGAGGCTCATCCTCATCGGGCCGCCCACATCGTTCTTTCAAGTTACTCTG GACAATCATATAAAGCAAATGCTGCAGTCCGGCCAAGATATCAGTCGACACCTGTATACAACCACCGCGT CACCACCAACTCGTCTTCTACCCATCACGCCACGGGAAGCTCGGGGGAGCTTAACCTCTCAACAAATGGC GGTTCGCGACGAACGCAATCTTCCAACATGGCGGCCGTAACGCGAAGCCCGTCATCACAGCGAACCCTCG GCGCTCAGATGAAGATGATCGAACTCACCCGGCCCGAGATCGTTCCCTCATCTAGCAGTGGGTTCAGCAG TAGACCAAGTAGCACACATAGCAGCTCAAATCCAGGCGAAGAAGGCAGATCGCATACTCCTGTCCATCCT CAAATTGGCAATGCAGACGCAGTCTTTCTCCCTGCAGATATAACATCATGGTCCATCTCGGATGTTTCTC ACTTTGTCCAGTCACTGAAAGGATGTGAAGACTATTGTCAAGTGTTCCGGGAGCAAGCCATTGATGGTGA GATTCTTCCCGTACTCACCGAAGATCACCTTCTTCACAACATGGGTCTGAAGCTGGGACCGGCTCTCAAG ATCAGACTCCACGTTGCCAGACGTCTGGGCTTCACGCTGGACGGTCAGTACTGTAACACCAGCGTACCTC CTCAGTCCACCCCCCTCACACCCCAGCTCCCGCCACCGACGTTAACGCCTCAAGAATCAGCGGCCACCCC TGTCCCGCCCCGTTCGGTTACCCCAGCGACGGGAACTTCGAAACCTTCCTCTAGCGAGGTGTTCACAGAT GATGTGTAGTAGTCGGGAAGTGCCTTTTACAGTTGCAGACTTTCATAGCTTACAGAGGATGTTCAGTGCT TAGCAAGTGTCCTATAGCCATTTCAGACTTTCGTAACATTCGTCATTACCTGTGCTATGGCGTGATTGTT GCCGTTGGGGTGGATGTAACCCGTCTGTTTCAGAAATGTTCCATAGTAGTGAATCCTTGATAGTTCATAC ATGTAGCTGTAACATAACCAGACAACTCCCACGGCATAATTGTTCTGATGAAGAGAAAGACAGGAGCCAG GAAGGTGTTTCAGATAGGAATTCAATTTGACTTTGAGTTCCGTTTAAAATTCCTAGTCGTTTATGGTGCA ACAACACATCTCCATATTTGTGATTTCATGCTCAGGCTTAGAGACGTGCCTTTGTGAGATAGTATCAAAG AGATTTATATTTTCAGTATACTATATGCTTTACTTCAACATGACCTTCCCTTTAAACATGACTCTATATG TGTTAAACAGCCAAAAGGTCAATGATGTTACAGCTGGAACTGTGATGTCATCTACCTGATTTAAGTAAGA AAAGTCCATGTTTTTCAAAATATGCATTTTAATTTGATACTGAACTGTGCAAATGTTCACAATTTTGTCA CCATCATGTAAGCCTACATTTTTAAGTTTTTCTTGTGGATCAACAAATCAAAAGTACAAGCCTTAAACTA GATCAGCTGAGAGGTAAATAAATTAAAGTTAAAAAAGTTATTGAAAGTATGTCATGAACATAAAGAGCAA TTTTTCTTGATTTTACTTTGAAATCGATACTTTTCCAACAATTGTAGAAAAGTGCCATCAACCACTTTCT ATACTTTGTCAGCAGATTTTACTCAATGGGGCCATCGGTTAATATGAATCCTCGTAAAATAAATTGAAAA CTCATAAGTTGGACCCTTGCCCTACGTTGTTTGCAGGATCTGACAAATGGGATTTATCAAAATCATCTTG CACTCGCTTTCTAAAAGTAAGACAGAAAAAGCTCACTAATATATTCACAGGCCTAATTGTTTGTTTTGAT TTTTGAACTATATGAAGTGTATGAACAGCAGAGTACTTATTTTTAGATAGATCTGCAACAATCAGTGAAG CTCTTCTCTGGCTAGTGCAATCCTTCTTCATATACAGGGTATCTCAAAAAAATGGAAGTCTAGTGTTGAA GGTTGCTACTTCTCGACTCGAGCCTTCTACTCAAGCCTCTCACCCTGCCTACTACTCGGTTTTCCACTCA TGGTTTACAGTCCTATTTAGGACTACACTCCTTTGAAAAGAATACTCTACTTTTCAACCTCCACTTTCTT GCCTTTCCATTTCACCTCCATTTCTGTCCACCTTCTATCTCAATGTACTGTAAACCACTTCCACGAGTGT TCTTAATTTGTCTTCAAAAAGACTGATTTCCTCCATATGTAATGCAAAAATCATTGCATTCAGTGCTTTT TTTTTATTATTAAATCCTTTCCCAAATGGTCATTCATATGACCTATATGATGTGAAGGGACAGCTGTCCC ACACACCTCTTGTCAATTTCAACTGTTTCAAGTTTACTTGCATCCATATGCTTCTCCCGAACAACATAAC ATCATCAAAGGCTCTTGTACATCGCCCAAATCTGCAAAATTCTAAAATGACTGCATTTTAAGAATTGTCA TGGAAATCCCTTCAAAAGGCAAGGCCCTTTGTAATCCATCATTCCACTTTCTTTTGGACACCCTGTCTTT TGCGTTATTTCTTGCCAGGGTAATGTACCCACAGGCGTGACCAATTTCATCCAAACGATTGGAAAAAATA TGCAAATAATTGCCACATTTGCAGATTATCTGTGGTAATAATATTTGAATATTTCAAGACATTACCACCG TTTACATTTTTGCCAAGACCTAAACATGAATATTTGTCAAGTTTGAAGGTTCGGGTGCCTTAACTTATGC ATGTGTATTGAAAATTTTGATACATTTTGTTTTTTCATTCCTTGCCTTTTTTTTCCAAGTGGAATAATTC ATCAACATGTCAGAAACTTAAATTTTTAGTGGGTAACTATTTCGATTTGCAATTTATTTGTTCATTCTGT TTTGGAAGTTTGATATGTATGTATATTTGTAAATTCTATTTATTGTTAAAAACTTTCATTTCGCTTTCTT TCTTTCAAAGTTTTTGAATTTCTTTGCAGCTTGTTGCATATTCCGGATATTTTGCATTGCATCAAGCTTG TATTAGATGTTTGTATATATTGCCTTTTCTAAAAAAGAAATTAGATATAAGTGCCTTTATCGCTTCAATA TTGTATCAATATGTGGATACCAAATGTATGTGCATTGACAAGAAACTAAGAAGAAAGGGGTTTTTGTAAT AAGAAGTGCTAATACCTGTTGTATCAAATGGATATTTTAATAAATTTATTTTGATAATGAAGTTTGGTGA GTTTGTGTTCTGTTTTTAAAATGATTCTACCACAAAGTCTGTAAAGCAAGCCATATTTCGATACTCGGAT GCTTAAAAAAGCAAGAAGTTTTCAGTTCAATGTAATTCATAAAATAATCAACCATTCTATACACCTGACC CCCATTTTTAAAGGGATACTCCAGGCTGTGAATTTTACTCTATTTATTTAGAAATAAATATCTTCAGCAC AAAGCATCCCTTTAAGAATTCTTACATCACTTCATAAAACTGCTTGGGTAATTATCTTTTCATAGCATTT AAGACAGTCATAGAATCAGAAATCAAAGAGCTGTGAGTTGGACACACACATTTAGTGGAAATGCCCTTTA CGTTATTCCAAGGAAGTTTCTAAACTTAATTCAACCCCCCCC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds