Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041600237.1 PREDICTED: Lytechinus variegatus tyrosine-protein kinase Tec-like (LOC121408688), transcript variant X1, mRNA GACCATGCGTGAAGTCTTCTTTTGATGTCGGTCCTCTTTCCAATGAATTCACTCATGATATAATAGATTT CTTTTGTCCAATTTCTAAGTTCAAGCTCTGTAAATATGAATAATAGCATTGAATTCTAGTGTTGGGCGTT TCCTCATAAACAGGGCATTGGGTTTGTATGGCATTCCTGGCGTAGTTATGGGATTGGTGTACACTAGATA TCATTCAACTCTGAAACATAGGCATTTCTCATAGAGGACTATCACTTGAGAACTGTCTTTCCTACTGATG CAACCAACATGAGCTCTAGTGGCTACTCTACGGGCTCATTCTCCACTGGATCCTACTCATTGGATTCTGA TCGAGGATTCACCTTTTCTCCTCATAGGAGTAAGAATCCTAGTGGGAAGAAGAGAGAGAAACTCAAAGTC ATGTTTGACTTGGATACGGAGAGTTCTGAAGATGAAACATTGGAACCTGAGGAGCTTGGAGAGAGGTTTC TAAAAGTTGAGCTACCTAATCTTGATACCACTTCTGTTCCTGAAAGCTGTACTTCAGGTACTTCAGTTTC TGATGGTTTTGTTACAACTACAGATGAACCAAATGAGATCTATGATGAAGCTAACCATGGAACAGTTAAA AGGAACTTCTATGACCTGTATGACGATGTCAGACAGTTTTCATATGACTCTGGCATTTCTGATTCTGGGA ATTCATCGGAACAACGTCGGGAATCATACCCACATATATTTGTCTCGCATAGACATATACCAGAACCAGA CTATGATGATTTGCCACAAGGTAAACCAAAAGAATGCTTTGATAAACTGCCGCATAATTTACCAGAACGA GACTATGATGATCTTCCACAGGCCATAAGGGTTACCCAAGATCGTTTTCACCATGTTACTATCAGTCGAG CAATGTCTAAATCTAAGAACTCAGCCAACAGGTCTGAGCGTCGATCATTGCCTATCCAGGTGTTCTTGAA TGGGCACTTGTTCCTGGATTCATCTAGACTACCTCATGTCAGGACTAAACGTGGAAAAGAGAAGAATCGT ATTGATCTGAATCAGATTAAAGTGGTTGAACCTGTTTCTGATGGTGCTTTCCAAGACAGACAGAATGGCA TTCAGGTTACGTACAGTGAGCAGAATAACGATGTTACTCTCTATTTCTTCCCAGCGTCTAAGAAAGAGCA ACAAGAATGGCTTCATGATCTCAGAGATTTGGTTAAGAACAATCCCAATCTTAGTGACCGATATCACTAT GGTATCTGGACGATGTCAAAATACACCTGTTGCCAGAAGGATTATAAGGGAGCTCCAGGATGTCAGAACA CTTACAGAACACAACCTCAACCGTCTTATCCAACTACACCATCAAACGGTAAACGCACTCATGGGCCTCA ACAAATCAGCTTACCTGGAGTGCCTATAAACAACCAGAAACGACCTCCTAAACCACCGATACCCATCCCA AATCCACCTGTTACAGATAGACCAAAGATGATAGTAATAGCCAAGTATGACTACGAACCATTAGAGAAGA TTGATATACCATTACAGAGAGGCCAGGAATACTCAGTACTCAATAACTCCAGAGAATACTGGTGGAAAGT CAGAGATAAACACGGGCGCGAAGGTTTCATACCCAGCAACTATGTAGAAGAAAAGAGTAAATATTCAACA GGCCTAGAAAGATATGATTGGTTTAATGGAACGTGGTCAAGACAAAGAACAGAACTTGAACTAAAACAAG AAGGCAAAGAAGGCTGTTTCACTGTAAGGAATTCAAGACAACCAGGATTGTGTACGCTCTCAGTATTAGC CAAAGAAAAAGGACCAGGAGGAGAGGACGTAGTTAGACACTACCACATCAAACAGAACTCACACAAAGAG TTTTATGTATCTGAGAAACATTGTTTTAGAGATATGGCTAAACTCATTGAATACCATCAACACAATGCTG GGGGTCTAATAACGAGATTACGGAATCCACCAGGGTTTACGTTACCAACCACAGCTGGTCTTGGATCAAC TAAATGGGAGATCAGTTGGTCAGAGCTGAAGATATTACAAGAGTTAGGGAGAGGTCAATTTGGTGTGGTC CATTTGGCGAAACTGACCCACAACAACCGGTTTGTAGCGGTCAAGAGAATGCAAGAGGGATCTATGTCAG AAGAGGACTTCATCGATGAAGCTAAAGTAATGAAAGAATTACAACATGAAAACCTTGTACAGCTCTATGG TGTAACATCAGCACAAAGACCAATGTGTATAGTCACAGAATATATGTCAAAAGGTTGCTTGTTGTCATAC CTCAGAACACACACGTATATGTTATTAGAGAACACCTCAATACTCATCTACATGACCCAGCAAGTCTGTG CTGGTATGGCCTATCTAGAATCAAAGCACTTCATACACAGAGATTTGGCTGCGAGGAATTGTCTTGTAGG TGATAAGCACATTGTCAAAGTGGCAGACTTTGGTCTTACTAGGTATGTGATGGATGATGAATACACAAGC TCAGGGACTAAGTTTCCAATCAAGTGGGCTCCACCTGAAGTACTCCATTATACAAGATTTAGCAGCAAGT CAGATGTATGGGCATTTGGGATCCTGATGTGGGAGGTGTTCTCCGGTGGCCTGGCTCCGTACCCTGCCAT GAGTAACGTAGAGGTCGTTGATCAGGTCACGAGGCACGGCTATCGTATGGATCGACCTGATCATTGTCCG TATCAGATGTACAGAATTATGAATGAGTGTTGGAGAGAGAGACCAGAGAATAGACCATCATTCAACTCCT TGACTGGCAAATTAGATCAATTAACAGAAAGAACAGAGGTTCATCATTCATGACACCAATAACTCAAACA ACAAATGGTGTGCTAAGGTGTGCATCTCCAATAGCCACAGTTTATCTATAAAGAAGAGAGAGTGTCCTAG TCTTTGGTGTCCAGACACTTTACAGGGTTCATCATTTGGTTGAGGTGATATTGCTTCCAGTGTATCATCA AATCACTAGGAACATTATATGTACTAGTCGTGGTGTCCAGCCACCTTGGATCAAGACATCAATGCACTGC AATTCTATTTGAGAATGTAGACATGTTAAACATTTTTCAGAAATGCCTTGAATGAACCTGATGACGAAGA GAGTAAAGAAGAACACCCATGTCGTTTTCTTAATCCGAGGATAATCAATGGGCCATAAGAAACTAAGTGA TGACCTTGCATTTAGATTTCAACTGAGTTTGTTTCATTCTATGACCAGGATAGAAGGGACACCTCATTCA AACTGAATGTCAGCATTAAGTGTGTCCAGAGATTGCAGCTGACACCAATCTTAGTCTTGTAGGACAGACT CTAGCCTTGATGTGACCTTGACCAACCCTTAAGATGAAATGTGCATAATTATCGATGACTCTTGGATAGG ATCGTATTGAGTGTGAGGTTTCGTAGGGTGACTCCAGAAACAATGTGATTGTTAAAAGTTCCAGCCTACA TACCTCAATCTTTCTTCCATCAATGTGTAGCTTTGGTTTCATTCATTTGATAAGCCTTTCGCCAGAGTCG TAGAAAGTGAAGTTGTGATGAATGGAACCGGCCTATTCACAGCAATAGCCCTTGGGGCACCTACTACCAA GCCCAAATTTCTCAACAGATCATATCATTATATGATGACAATGTTACCAGCAATGTTGGTTTTCATGCAG GTAGCCAATTAGTGACCCCTCCACATATGACTAGGTCGATCCACCCACATATGGCATCAATACTAACAAA TGGTACAGGGTCACTCGTTCATTCAGAATAAAATGCTTGTAATAATAAGAGCTAAGGTATTTTGATATTT TTTTGATGGACTTATTTGTAATGTTGATACTAGCCAAAAATTCCATCTCAGATACTAGTTTACAATTAGG CTGCATTCTTTTTATACTGATATTGACGAGGTATTTCGTTATTTTACATGTTTGCTCAATAATGTTTATT TTTCTATCGCGACACAACTTTCATCACAATAACGAACTACATGCTACTTGTCAAAACTTTTTGTACATCA TTCACATTTTATTTACACTTATGATACTCGTATTGCGTGTGTCATGCTATGTCACTGTTGTAAGAAATCT GATTAAAAATTTAAATACATTCCTCCTAAATGACAAATTCGTGTAAAATCAACTCTAAAAAGATTAGAAA GATAAGAGAAAGCAGTAAAAAGTTGTATTTGTGGAATAGTGGCCTCCGTGCACTGTGCACTGGTGAATGT CTTTGTGTAGTCCTGTATTGTACTTCCATATTCCCACATATACTACCAGGCTAGATTTGACTGGTTTATC CTAAAGAGGGCCACCCCCACTGATAATCATGTACTAACTCATACTGTAAACACTTGCCGAGGAAGCTAGA CAGATGTGGTGCTTGTAAAACATTCCTGGCTGAATAGATAGCACACAACTAGCAGTAATAAGATATGAGA TCAATATGTATATTCTCTTTATTCTCCAGTCAGCTTTCTGTAATAAGTTGGATTCCTGCAAGTTACCATT GCATAGCAAAGTTATAACTTTTATGTAACAGGGCCCTGACCCGCTGTGTGGGATCTCCCTGAAATGATTC ATCTCTATTTTCTAGTACATATGAAAAGTTGTTTTGTTCTCAGATTATCACGGCATCGATAGCAGATCAT GAAATGAAGTAAGAATGGAATTGATTGGGGTGCGATGTAAGAAAGGATGGATTGTTTGGGAGGAATGTCA TTTTTCTCATATTTTTATCATATTGATAATATCCAGACTCTGTTTCTTATATTGAAATTGTGCATCTTCT AGAATTACTTGAAAATAAGTTGGCTATCAGGGATAAGAGTGTGCAAGGATTACCAAGAATGGTGTTCAAG TCACTTCAATGATGTAATGATGAAAACTTGATTCTTTTTTGTTGTCTTTGGCAAATTATACCACACCACA TTCTAAAACAACACCTTTGGATCAAATAAGTGAAGAAAACTAGACAAGTATTGAAGTGCTTTGTAACTGC AAGGAAAAGGGTCTCTACCAAAATTCTTGCTATGGAATTGGTTGGATTGGTTTTGTTCCCAATTTTCAAA CTCAAGCAGAATAGTAATGAAGATCAAGCGTTTATTCAAATTCCATGTTTTTTTCCCATCACTTTTTTTC AAAATTTACTGTCATACAAGTAAAGTTGTTTAATGGTCTAACATGCACATTCTTCCAACGATATTTGTTG GTTTTATTAGTAAAAAGTAGTGTTCTGCATATGAATTTTCTCTCTCTAATCAGCGAACCAACTTTCCTTC CTATCTTTATATTTTGACAGTCTGTAGTATGAAATACTTTGAAGGACTGCTTGTATGTACTTTCAACTCA GTAGATCTTTTTGCATACCTTTGTAACTATGCAAATATATATGTTCATTTCACAATAAGGATGGAGATTT TTTTATAGTTACTTCCACGTTTTGATGTCTTTGTCTTTTCAATTTTGGGGCATCTTTTTATAGCTTTTAT ATATTTTGAATTTGGAACTCATTTGGTTTCTACAGAAGCAATATATTATATTTTTATAGTGTGTCATACA GCTGCAGTTGAATATCTTCATATTATGTTGCATAATCAGGTCTATGATTAATTTGTGAGCCTTTTTTATA TACATCTTAAGATTGAATTGTTAAAAAAAAAAACTGTTTCATTCATCTTGTGCCAACATGCAAATCCAAG AAAATTGTGTGAACTGAAAATTCTTTATTTTTTATACAAACAAATACATATGTCATGAAAATTGCACAGG TCGTAGGCAGCAATGTTTTTGCTTGTGTCAGAAGATGAACTTAATGGCCCTATACATGCTATCAATGTTT GTGGTGTAAAATAAAGCCTCGGACAAAGTGCTGCAAGTGAGCACTGCAAGTGTCAAATGCCCTTAAAATA AGTGAAATTACAAGTGGTGTATTCAGTCACTGGTATGTTTGTGAACTGTTGTGTTCTCATTGTTATTTAT TAATCTCAAAATTATTCATGCATTAGTTCTGACATTAAATTTTTTATCACAATGATGCGAGAGCTATTAA AATCAAATTCATCATCATTCCAAGACATTTTTTTCATACTCTTTCTATTTTCATTAGTCCCTTTCAGAAA TTGAATTTCACTTTATCAGACTTCATGGTGGTTTCAAAAAACAAATATTTTTGGGGTACAAATTAAAAGT ATGAAGGATGTACCATGAGTCATTCATCATTAAGACTTTTATTCAAATTGCTCTCTAGTTGTTTGATGTT ATTTTTTATTCAGTGTGAGCAGGTTACTAACAAATTTAAATAATGATGATTACTGATAGATGCTATAATG CATTCACACATATATAGCATGATCTACCCTATGGCTTATTACAATACATTGTATTACTCCTGATTTAATG TTAGCTATGATTTCCAGCATGTAGTGCATTCAAAGAATTCATCTTTCTGACTATCCTCTCACCTCTACTG GATTGAACGCAGCACAATGTGGATTAAATACAGGTTCATATCAATTCCACTTTTGACAGTCTTGTTCTTT GGAAAGGTACTTTAAATTAGACTGATCCTTGTTTTGATTGTAAGAGGTAAGATTGCAAACACTTTCTAAG GAGCAACTCTAGCAATACCTTGTGATTTCATTCTTGTTATTGACATTTGTTATATTTTCATGTATTTATT ACTGATTGGTCTGATTATTGGTGTTGCACTTGTCGTATAAGTATCATGTAAGCATTTCAAATCATGTCAT TTTAATCCTGCCATTAATTATGTAGAAGTTGTAATACTCAGAAAGATGTAAATTACTTATCAGAGTAATA AATATTGCTTTTTAAATGTCTGTAACGATAAGATGGGTGAATTTTGAATACTAGTATTGCATGTCATATA TGATTACCCCTGTTGTTTGGTGTATCATGATATGTGATTTGTATAGCTTGTGATGTAAATTGATTAATTT GTATATGATGTCAATCCTCTATGTACTCCTTGTATAGTCTTATATAACGGCTACATACAATCACTTTATA TCTGTAAATATGATCTCATATAAATTTATCTATATATAATATGCATCAGCATTTTTGTAAGTTTTAGCGG TGCATGTATGATAAAGGGCCTATATGCTCAGATGAGATTGAAATCATTGGTGAATTAAATATCTCATGAT GGGTGAGAGGTGAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds