Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT120870.1 TSA: Strongylocentrotus purpuratus WHL22.576658.0 mRNA sequence GTTCGTCGTTCCTCCTCAATAAGAATTTGTATTGTTGAAGACATTGGTCGTGCGTGTGCGAGGGAGGAGT CGAAGTGCTCCCATTTCATTACTTTTCTATTCAATAAGTTGTATCTACCACATCTCCCAAACTGGCTGAA CGGAGAATAAGCAGCCCAGACGGATTACTAATCCTTCAAGTTCCGAAAGATCAGAGGAACTTATCGGGCA GGCGTGCTTCTTCGCCAGAACAACAAGAGCAAATTATTATGAGTGGCAAGGCCAAGGAAAGGAACGAAGA CGTCGAATTGATGGCGGAGTCGAGCTTCGTAAACCAGAAGAAGCCACGCATCTCGGCCATCCCTGCCGAT GGCCGGGCAGAGATCATCGGGGCTGGTGAACCTGATGGAGGGATAGGATGTTGTGGAATGATCTTAACGT TTTTCTCATGGATTGTTCTCATCTGTACTGTGCCCTTTTCACTCTTTGTCTGCATAAAGGTTGTTCAAGA GTATGAGAGAGCGGTTATTTTTAGATTGGGTCGGCTACTCGCTGGAGGTGCTAAAGGCCCAGGTATTTTC TTGATCCTGCCTTGCATTGAGAGCTACACTAAGGTGGATCTCAGAACTGTTTCATTTGATGTACCCCCTC AAGAGATTCTCACCAAAGACAGCGTGACGGTGTCTGTGGACGCGGTCGTCTACTACCGAGTCCAGAACGC CACCATCAGCATCGCCAATGTGGAGGACGCCAATGCCTCGACCCGCCTCCTGGCCCAGACCACCCTGCGG AACGTGCTCGGAACCAAGAACCTATCAGAGATCCTCTCAGACCGGGAGGGTATCAGCCATTATATGCAGT CAAGTTTGGATGAGGCGACAGATCCTTGGGGTATCAAAGTCGAACGTGTTGAAATTAAAGATGTTCGTCT ACCTGTTCAGTTACAGAGAGCTATGGCTGCAGAGGCTGAAGCTGCCAGGGAAGCAAGAGCAAAGGTAATA GCAGCAGAGGGAGAACAGAATGCCTCGCGAGCCCTGAAGGAAGCTGCTGATACCATCTCAGAATCCCCTA CCGCTCTCCAGCTTAGATACCTTCAGACCCTCAACACCATCTCAGCCGAGAAGAACTCAACAATCATCTT TCCTCTGCCAATTGATCTTCTAAATGTCATGAAGAAGTGGTAATGCATAGGAGACATTGGATTGCATTGC TAGATCTCAAGGCCCAGCATTTTTTCTACGATAGGAGACCACCCCCCCCCCTCCCCCTCCTCAAAATGGC AATGGTATTTTAATCCCATTCTGTGTTTAACCAATCAACCAGTGTATTGTTCTACATGATGTATAAAACT GAAGTAGAATAGAACATAAAGCTGGAAATAAACAAGGAATGCGATGTCAAGATGTTATCTAAAGTTTTAG CAGAATTTTCAACAAAAAATTATTTCACTTTTTAATTAGATTCTTGTGCAAAGTAGGTGCTTAATATTCG TGCAATAGTGGTATTTTTCTAGATGCTAAAATGTTCCTCTGACAGCTGATATTTATTAAAGAAGTTAAAC ATATTTTGTTTGCCAAAGTTATCCAGTTTTCATTTTGATAAATACAAAACATTTGTTTGAAAATGGATGA GAAAAATTTCTAGGTATGCGAATATAGTTCTTAAACTACTGGCAAATGAAATAATTTTGCATAGAAATAT TATTTAAGAAATATTTAAAACAAGAAATTAGATTAAAAGGTAGCGTGCTCCTGTACATGGAAATGTGCAA ATTCGATGTTGGACATGCAAATGGAAAGAGCTCTTTTTGAGAATAACATGACCAAAATTCTTTGAATGTT TTTTGTTCAAATTAACCCTTCATGATTATTTTTTAACATTGTAATGTATAATATTATTAAGTTGTACTTG TATTGTTTGTGATGTTGTTATTTTCTGCATGATAGCAATGATGAATATGTGATTTTCACACTGTTATTGT CATTTTGAATTATTATTGTGTCAAGATATTGTAGCAAACAAGAAATTCCAGTGGAACCATTTATCTTTAT TTAAACATTTTTCTTTGTTTTATTCCGATCGAAGTACCTGCATTTAAACTTTCAAGAAAGTAAACTTACT ATGAAAATGTTTGAAGATTCATGAAGTATGAAAATGGTAACTATATACTAGAATCAAATGGAGGTATCTT ACCATTTTAGGGGGCATTCAGCGTTTTGAAGATTACTGTAGCCCAATTATTTGTGAACACCCTCCCTAAC TCACAAAATGAATCAGTTATACCCTTAGATTTGGCTCTATGAATGACTGCTACCTGTGATAAGTTTCATA TAAACCGTTTAAATTATTAGATCCTTGTCAGTTGAGAAAGGTATTTGGAATTTATTGGAAGAAAACAGAT GTGGTTGAATCTAATGTTGTGTTGTAAATATCAGCAACTTGTAAAAATACACAGAAATCATATCTATTTA TTACACAGCACTGTATATTGTGTCACATTAACTGAGCAAAGCATATAGATAATTAAAACTTAACATGCTT TGGTAGACATGAGTATCATATTGTTAATGCAAGCATCTGCCGATGACATGATAAGACAGTAATAGACAAT CTTGAGAAGCAGTTTGTAGATTTTTGTCTTTCATGAAAGTTTAGATAGTTTGTTTATATCATTTAAACTA AAAAAATGCAGAGTTTGCATTGCCCCTGTTTAAGTCATAATCCAAGTATGAAACATTACAATATATTGCA AGTATGTGACAATTTAGACATATATAAATTATGTTGAAATTTAATTAGAACAAACAAACTAATTTTTAAG TATTCCCATTTAAATCAATCACCTTTACAGTGAAGATTATGTATGACGGCCTGCCTGTATATCTTTTTTA AGAAGAAAAAATATGGGTAGAAAAGAAATCATATACATGTGGTTTGAGTAATGGTCATATATTTTCTTAA TAATTATATATTTGCATGTTTTTTATCACTTTTTGTTGATGTTGTTACTTAAATCTGTTAGCATCATACC CATTGTAAAACTGATTAAAAATTTCCAATGTGTTCATGTGTACTAAAGCCCAATTATTTGATTTTGTCAT GCATATAACGAATATGACAACGGAAGTATTATGTAGAAATTATGTTTACTCTGATAATATATTCAAAAGT AGAATAAAGTGTATATCATGCACTTAAAATTACAAATTTTCTTACTTTTTGAAATCAAGCTCATCGTTTT TATTTGACTCATCAAATTTTGATGACTATGTCAATTAAACCAAGAACCTACTAAATATACTTTAGACTGT ATTTTTTACTTCACTAGGTAGCATTCTTCTGTGTGTTACTAAATTTATATCTTGTAAAAAATAGCTGCTG AAATCACATTTTCTTTTCATCTTGCTGTTTGATTTTCCTATTTTCCAATCATATCGACCAATAGGATTTT ATATCTTCCAGGAATTTTTTATCTGGATTGTTCAGTTGACAACCTAGTATGCAATACAAAAATATTTAAT CACAAAATAGTAGCATCACAGCTGTTTGGCTGAGTGACTTCAATTTTGTTTTATATATATGCAAGTATTC TTTTTGGTGAGTAAATGGATATTTAAATGTGACAAAATTAAATCTCATGCCGATTCAATTGACCTCAAAT TAGAGTTCAATGCCACCGTCAAAATGAGGCGTGTCAAAATAGGAATATTTTATAACCAACATTAAAACAA AAAAGACAATTAAAAAAAGATATTATTTGGACTTTTTGATTATTAAAAAAACAGAAGAAAAAAGATGGTA TATAAACTTTTCAAATGTCCTTCTATTTGGAGGCTTTCCTATATATTTACAGTTAGACCCTTTTTGCTTG TGTTTCATTTTCATAAGTTATGGACATAAATGACAGTTATTTCATACAATGTATACCTGTTAATAAATAT TGATACTCTTTCATGTTATAT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds