Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT106996.1 TSA: Strongylocentrotus purpuratus WHL22.325496.1 mRNA sequence TCAGAATAATATAGAGGAGACCCCAATGTTTGATCCCAAGTTATTGGAGAAACTCAAAGCAGATTTTGAA AGTATTTCAAAAGTCTCCTTCAAGCCACCCATCAGTCCTGCCAATCCAGGAAACGATTTGCTGATGAGAC CACTTCAAATAGGAGACTATGATAAAGGGTACCTGCATCTGCTTTCACAGCTTACAACTGTTGGCGATGT GCCAAGGAAGCTCTTTGAAGAACAATTCCATGCCTACAAAGCCTGTCCAAACTCTTACTACATCATTGTG ATAGAAGACACAAGCTGTGGTCAGGTGGTGGCTACAGGAACTTTAGGAATAGACTTCAAGTTTACTCATA TGTGCTCAAAGAAAGGAAAGTTGGATGAAGTAGTGGTGAAAGAGGAATACAGGGGAAAGCAGCTAGGAAA ACTGATGGTGGAAACCCTGACATTACTTAGTCAACAAGTCGGCTGCTACAAGACAACTCTAGAGTGCAAG ACAGATAATATACCATTCTACACAAAGTTTGGCTACAAGCAGGACCCTGAGAATTACATGACCTATCGTC ATGAACATTGCTCGTTGAATAAGGAGGAGGAGATTAACAGCTGATGGCTGCTACAAGACAACTCATCTTA AATCTTCTGAATCATACTAAAAGAATTCTGAAATTCAACCTTGGATGCAGCAGTATACCTCGACCTGACC CTAAACCTACCTGCTTACAAGACAACTCTAGAGTGCAAGACAGATAATACCCCATTAAACAAAATATTCA GCAACAAGGAGGACCCGAGAATTACATGAGCTATCGCCATACACATTGCTTGTTGAATAAGAAGGACATT AACTGCTAAGGTTTTCAGAGCAACCCATCTTTATTTGTATTGAATCATGGGTGAAATCAAGTCAGATGTC TTCATATAGCTCGTGGAATCCTCGGCACATGTGTATGTTAATGGGAGAGTATGAGATAGAGAGAAGGTGT TTTTACATCTCTAGTTTACCTGTCTATCTTTTAGACATTTCCATTGCTGCATAGTGAAATCTTTTTTGTA GGGGAACTTGGTGCATGAGCAACTCATCATTTGTTTTCTTTCTATTTCTCTATTCATCGATGGCGAGTTG TCTTAAAGTAGAAAAGAGTTGTTAATCATGACCAGTGTAGGAGATTCCGCTGTCCTGTGTGTGCAAATTT TCAATCACCAGTCAGCTGATAGTGGTGAAAAGATATGTGTTTAGAAGCGAGATATTGGTTAATCAATAAA ACAGATACTATGTAAAGTATATTCTCAGTAATCAGATTGACATTATTAAAGATGATGTGGAAAGAATACA AATTAAAAGTGCCAAATGGACAAAGTCATTCTTAAAAGAAAATGCTTATTGAAGTGAAGACAAAGAGCTT CCATTATGACGATCTTGCATGCATTGACATTGCAAAGTTTATTTTCAGTTGATTTTCTTGATGTTCATAT CATGTGGGCTGAACTAAATGTGTAGTTTATTGATACCTCACTGCTTTGTATTTATAGACTCAGTCCATCT TCTACAATATTTATATGTTTCTTCTGTTTTGTTCCCCCAATATTCAGGGTTTAGAAGTGGTATAAGTTCT TATTAGTAAAAGTCATACACTTTTTTTTGTAGAACATAAGCCTTTAGACAGGGTTTTATAACTACAATAT GTGTTTTTATTGCTTTCATTAGACAAAGCCCACCCGCATTTTTATGTATATCGGAATGCTAACTTGTATC CACTATAGATATATGCGTAGACTATCCAGTGTTTTTTTCCGGCTATTCAAACATTATTTTGAATTTACCT GTAAAATGAATAAAAATAAACCTAATATTAAGCAGTTAATATGCCTTGAAATACTCAAATCTTCAAATCT CAGATCGTCAAATAAATTATGATAATAAAAATCTTTTGAATTGATATAAACTTCTTTTTAGAAAAGTTAA GCGAGCATAGACAGTTTTTATTTTCTTCTTTCTTTCTTGTTTGTATATATGTGTGTTTGCCTTTTAAGGA AGTCATACTGGAAAGTATTGACTAAATGTGCAATTTAATGTTATTGGTTTAACTGGTGACTGGACATTCA TTCTATAATTTGTTTCAAATAGCTCAAAATGTGTGAAGCTACTTGATAATGGAAACCTCCCTTTTTACAA AATTTCAAAGAAAACACTGACAAATCCTGTGTGGGACTTTGGGCATTGTGCATGAGAATATGACTGGAAA TCACTTTGACCGCATTTCTGAAAATTGTTTATATGAGAAATAGTGTGCCACTTGGCACTTACATTGCTGA ATATACAACTGTATGTGAATAAGTCATTTGTTCAACTGCCTCATAATAAATGTTATAAGGATATTTCATT ATTTAGTTTTACCTATCAAATTGTACTATTCAGTGTAATAAACTTTATGATGAAAATAATATATTGAAAA AAATGAATAGGAGAGTTTTATACATCTTCAAGAAATTTGTTTTAAGTGTATAATATATTCTTTCCAAAAC TTTCATATAGACATGTATTTTCAAATTAAATCATGTTGATTTTGCATTCGATTTCTTCTACTAGTGAAAC AATTTTGCATTAATATTCGAAGCAGTTTTATATTCAGTAATTTGTATAATTGCTTAGAGGGAAATAATGC AGAAATCTACAACGCCATTTTCATGCGAGTATTATTCTTTTTGTCCTTTGAGTGCTTATTTATCTAACAT ATTTATAGATATTGGTTTGTTCTAATGATAATCACGTACATGTTTTGAAGAAAAAAATGTATCCGCCTTA CATGTATATATTGATAATGATGTCGCCTTTATTACTTGTCTTTTGAAAGATACATTTTTGCCTTCATTTG ATTTTCAATTTCTGTCAGAACAAGGCGTTTGTAAAATGGGCAAATGACCAAAAATTGACAGTGAAAATTA AGTTGAAATCAATTACTTAAATGAAATAAAGTGTTACAAATAGTCTAGGGATAAACTTTTCATCTCACAT TCTGCTTATCTAAAGTTTTGAACTTTTGATACATGTGTAAAGTATGTCTTTCAGAATTTTACATTGTCCA AAGTTGAAGCTTGAGATGAAACACAAAACAATTTTTTAAAAATCATATTAATTTATTGTCAACCATAATT GACTGAAACCTTCAGACGCTTCACTTTTAGACGGATAATTTATATTTGTTTTGTTTGACACAGGTTCAGT ACTTTTTAGTTATTGCTTTTACATAGAAGTTGAGACTTTGTTGAATTTTTTGGAGGTATCTTTGCTTCAT CTCTATTTATTTCTACCCCAAAATGTTGACAGTGTATTCCGTTATTACCGTCATATCACCTTGTGCCTTG GGTCCAGATGCAACTATAATGTAAAAGGGCTTAATTTTAATATTTATTTTTTAAAAAAAAGTTGGGTAGA GGATATTTTTGCTTTTTTTTTCCTGGGTGCAAAGTGACTTGTCAACCACCTTGGGGCAAAAGTAAAGAAT GGTATATCCATCTACATTAAAATTGTAATTGGAACATATTATTATTATTATTATTTGATTTTATATATAT ATATTTTTTTTTGGGGGGGGGGGAGGGTAAAGAAGTGTTACATTTCCATAAGAGGAGTTTTCCTGGGCAT TTTAAAGTGTATTGTGCATTGTATTATATACCTCCACCAAAGAATTCAAACAAATGCCTAGGCTTTTATC CTTCAAATTGTGTATTCCTAAAATTAATATTGGTTGCTTCTTGTATTGTGTCTTCAATGTTCTTTAAAAT TAATCATCTTCTTCCAACATCTGATTATGAGTTTCTTGTATAAAAAATTTTAATTAATTTTCTTCTTCTA GAGAAGTAAATAATGCACATCTAGGAAGATTGTACATGTAACAATATAATTACAAATTTAATAGAGATAG TGCTAATATGAGCTTGGTTTTAACTCATTCTATTATTACACTTTTGTACAATGTGGTTTAAAAAAGTGGT ACATAGTAAATGAATTAATGTACTTACAACTTGTTTTCCTAATCAAGATGTAAATTATGTTACATCTAAG AGAAAGATGTAATTATATTCATTTGATTTGTTTCTAAATTATATTTTACTATCTTGTAAATTAGACCGGA ATTATTCATAATGAATGAAATAAAGACAATTTCAGTGGTATTCATAAAGCAATAATGTGTTTATTTGTCT GCCATATCCTCCACATTTCCATCCATTGATTTCACGTATGATAAATAATTTTAACAAAAATTTAGAATTG ATTTTAAAGGTAAAGACCAGTATTGGAAACGCCCCAATTTCAAAAAATGAAATGGAAGCTCTTATTACCA ATCATGTGAAAGAATATGTTTTGAATATTACATGATGATAAATTTTTTGATGGGAACCACCTACTAATTG ATATATTTGGTAAATTAGTGTATCTCTCGCCTGTTGAGAGATATGAAATGCATGTGTCGCACACGTGTGT GTAGTCCTATATACATCTTTCTGTGTACAGTGCTTCTAACTTTATGAAGACTTGGCCAAATTTCTTTATC ATTTTGATGATTCCAGAACCTTGCAGTACGTCTATGCTAGATGATCAACCTTTTCTGATCAATTTTCACG TTTCTTTCACAATGCAATCGATGACCATAACTGGTCTTTAGCTTTAACTATTCTCTTGAAGTTATTTACT CTTCTGCTCAATATCATAAAACCAAAAATGTGTGATCATTAGCTAGCAGCTTTCTTACAAACTTTAAACA GAGACATAATATATTTAATATATGATGTTGGGTTATCAGCAGTGAATTTGTATTGTACGGCAAACTACAA TATCATGAAGTTGAATGGAGCTATTGAAAACAAACCCTGTTTAAAATCACAAGATCTTGCTCTTGCCAAA AGTACATGCACAGGTGTTCACATGCAATGGTATAATGAGGTGGAGGGGGCAGGGGCATTGGTTCCACTAT GTAACAAATGAACTAGAAACAAGAGTAAAAGAGCAAGACAATCTAACATAGAGGGGGTGAAGTGCCATCT TATAACATTTACCCCTCTTCCTTCCCCTTTCTCTCTCTCTCTTTTAATGCCAGTCAAGTTTTGAAAGGCA CATGTGCTCCCCATGGCCATGGCTATGCCATACTGCTGTTCATGTGCAACTTTGGAGTGAAAGGATTAGA TTTAAACTTTTCTCCATCATTACAAAATGAATTGATAGCTTACAAACAACCCAAATATATGGATGCAAGA CTATCATTTTGTGTTTCATGAACATACATCTGCAAGATAAATTCTGCAAGATAAGTATAAATTCATCAAA CATTTCCTCATTGAGATTTATACATTTCATATGTATATTCCTCAGTGTGTGTTGCATCATACGAGACTGA GATAGAGTCAATTTCCAGCATAAACTCCCCATCCACGGCATCTCCCATAGTCAGACCAATAGCGTTGACT GACTCCAGGTCGGGTGGCATCTGTTTGTCCTGGACTCGCCCTCGACTTGACATGAAGAACTTGGTGAAAG GGATCTGAAGAGGCAAAACATGAAAATCAACTTTCATTTCAGTGAT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds