Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038205105.1 PREDICTED: Patiria miniata early endosome antigen 1-like (LOC119731829), transcript variant X4, mRNA TGTCGTGCAGCTGCAGCCGTGGCTATCGGACGCACAAGCTCCACCCCTTCATAAAACTTGAGAGCTCGAT GTTTCAAGGTTTTTCCCTCAGACAAATTGCATCTTGAACTGTGAGCCTAGTGCCCATTTAGCAGCAGCTG CAAGGAGTCACAATGGAAGCCTTGAAAAGGTTCAAGAAAAGGACGAAAGATGCAGTTGAGGGCAACAAAG GACAACCGCAAAAGGACTCTCAAGCTGCAGGAGAACAAGAGGGTTTCATATGCCCGGTATGTATGGTGAC CCTGGCTTCACCGGAGCAGCTCCAAGTGCACTGGGAGACAGTTCACAATGCACCAGCTACTGAGCCAACT CCTGCCCCTCCTAGCCAATCCCCTAAAGCCACCCCTGCTCCTATAATGGAACCATCCATACAGCACTCAT CAGTGAACAGGGATGGAGATGTGCTGGCACTCAGACAAGAACTGGAAGATTTACGTGTTTCATTGAAGGA GGAAAAGTGGTATTCTGAGGAACTGAAAAAAGAAGTGGACAAACTACAGCCAGGCCAATCGGCAGCTGGT GGAGGAGATGTGAACATGAAACGAGCAGAGGAAGACAGAACAATGTTGTCGTCTGAGGTGGTTTTACTTC GTCAGCAGTTAGCGGAATCCATGGAGAATGCTAAAGCTTACAAGACTGTCAAAGATGCCATGGAGCAGAA AGCAGCCTCATTGGCAACTGAGATGGTGACTTTGAAGTCTAGTCTGGATGAGGAGAAGACGTTGCATAAC AGCTTGAAGGAAGCCATGAAGCAAACACAGATTGAGCTTCAAGACAGAGATTCCAGAATGAAGGCAGTCC AGTCTCAACTACTTCAAAGGCCTGGTGCTGATGATGTCATGGTGCTCAAGAAGGAACTAGTCTCCGTACA AACCTTAATGGATGAGTTGTCACTAGCCAATGAAGCAGAGATGAATGAACTGAAACAGAAACATGAAGAA CTCAAGGCTGACTATGACAAATTACAAGCATCTGTTGCTGACAGCAGTAGTGGCAATGAAGCAGTCAAAC AAGAACTAGAAGCCAAGATGGCAGAAAACGTCGCCATGTCCCAACAACTCAATGAAGTACGCAGTCATTT GCAAGATCAAGAGTCAGCATGTAGCAAACTGCAGCAGGAATTGGAGTTTACTAAGCAGCAGCAACTGCAG CAGGTGACAAGTAAAGACAGTCAGCATGCTGAGCTGCTGCAGCAACTTCAACAGTCCAAAGCTTCTCAAG CAGAGATGGAGACTGAGATATCCCAGATACAGAAGCAGTTAGCAGACAGTAGACAGATGTCAGAGGAGCA GCATCGACAGCTAGAGCAGCAACTCGCTACAGCTCAGCTACAGATTGCCAAGACTGAGGGAACAGTGAAT GAGAAAGATTCCCAAGTGACGGATCTCCAGCTACAACTGGACATGTTACAGCAGCAATATGAGCAAGAGA GTATGAGTAACGACGAGTTGAGATCTCAGCTACGAGAACGTCAGTCACAGATAGAAGACCAACAACGCTC ACTCACAGACAAACAGGAGAAACTTGCTGAGTTGGAGACGTCGTTGCAGAAGCAGAAAGATGCAGCAGAG AGATTGGAAGGAGAGAGAGCAGACTTAATGGCCAAGATTGAAGCTGGAGAAGGCATATCCACAGCAATAC AGCAACTCAGGCAGGAAAATGAAAGCTTACAAGATCAGCTATCTGAGCTGCAGTTGAACAAAGAGAAATT GACAGAGGAACATCGAGCAGCAACTCAAGATCTTCATAAACAATTACAACAGAGTAAAGCGCAAATTGAG GGTGTGACAACACAGCATGAGAGGGCAGAGGCAAACTTGAAGGAGACAAGAACTAAACTGACTACAACTC AAGAAAAACTGGCAAATGCCGAGTCTGATCTCAAAATTAAGGGAGAATTACTTCTTGCTATGGAATCCTC CATGGCAACTCAACGAGCAGATCTTGAGAGTCATCTTAGAACATCTCGGACAGGATTGGAAGATAAACAA CAGGAAGTCAACAGGCTACAGGAACAACTGGAGAAGACTCGATCTGAATTATCAAGCACCAAGGACCAGC TAGCTGACCTTGATGTCAAACAAACATCAATTCAAGAACAATTGACGTCATCAACTCATCAATATTCATT GCTACAAAATGATCTACAGGCTAAGGTTAGTCAGTTAGCACTTGTTGAAGAGAACAAGAGGGAGTTAGAA GCACAGCTGAATGGTCAGGTGCAGTCATTACAGGCAAAGCTAACGGACAAAGAAGATGCATACAGTAAGA TGGCTGGAGAATATCAACAGACAAAAGAGCAAAATGCTGCAATAATCTCTGGACTACAAGGAGAGTTGGA CTCAACCAAGACGACACTGGCACAGACACAAACACAGCTACAACAACAGGTGGCCAAGCTTGAAGAGGAG AAGAAATCTGTTGAGGAATCACTGTCAGCAACACAGCAGAATCTACTGCAGAAAGAGCAAGAATCTACAC AACTACAACAACAAAAGGCTGCAGTTTTGGTACAAGCTGCGGAAAAAGTAGAGAAATTGACCGCTGATCT GCAGACCACACAGACTGAACTCAGCCAAACTAAGACTAATCTAGCTGCCAAGGAGCAATCTGTTCTTGAA CTGACTGAACGCCTTGAACGTCTACAGACCGAGAAATCTGAGTTGCAGGATCAATTTAATGTGGAGCAAG ATGTGGTGGTTTCTCTCAAGAAACTCAATACTGATCAAGAAGCAACTATTGCTCAAAAGGTTGAGCTGTG TGGCAAGTTGGAGAAGCAGTTGGAGAGTAAAGAGAATCAACAGAAGGATTTACAGCAGAAGATTGAGGTT CTGGAGCAAGAGATTGCCAAGTCATGTGACCAGTGTCGCAACTATGAATCACAAGTGGTCAAACTTCAGT CACAAGTCAGGGATGGACAGGAGAAGTGTACAGCTCTTCAGATGGAGCTTGAGAACCTCCACGACACTTT GACAAAGACTGAAGACTCCTTGGAGAAAGTCCGAGGGAGTGAGGCATCTCTCATGAGCAGCGTGGAAGGA TTACAGGAGGTCAAAATGGTGCTGGATGCCAGAGTGGCTGAACTAGATGAAGAGTTGAAGGTTGAGCTTG GAAGATTCCGGTCTTTGAAGCAGGAAGATACTGCCAAGCAAGCCGAAATCGGGAAGTTGAACGGAAAGAT TGGAGAGTTAGAAGAATCTAAATCCTCACTGAATGCTCAGCTGTCTGAGTTGCATACAGCAATCCAACAT GAAAAGGAAGACAGAGCGAAGGAAGTATCAGCCATGCAGGAAGCTAAACAACTCCTGATCAAACAGAAGC TGGACCTACAATCCCAGTTGATGGATAGGGAGACACAGTTAGCTAAAGCCGAGGTGGAATTCAATGAGAG TAAAGAAGTAGCACACAAAGTACAGACAATGTTGAGAGATGAGTCGGCTGCATTGCAGAATAAATTGGCA ACTGAGGAAAAAGCTAAGGCAGATTTACAGCGACAAACAGAAGAGTTAGAGCAACGGTCCAGCATGCAAC TCAGTGCACTGAATGAAAACCTGGCTACTCTCAGAAGCGATCTGTCACAAGCTGATACCAGGAAACAAGA ACTAGAGAAAGTAGTGGATGAACTGAGAGGAGAAGTAGCTGTTCTTGAAGCAACCATTCAGAATAATCAG GATGAACGAAGAACTCTTCTGGAAAGATGCCTTGCTAGTGAAGGTGACGTGGAGAAGCTACAGAGCAAAG TGGTCGAGCTTCGTCGGAAATTGGAGGATGCTCAGGCCGCAATGCATGAACTAGGACGAGAGAACCAGAA CCTACAGATTGTCCAATCCAAGCAGATGGCTCGCAAATGGGCCGATGATACAGAGGTCAAGACCTGTATG TCCTGTGAAAAGGCCTTCTCTGTCACTGTCAGAAGGCATCACTGCCGTCAATGTGGTAACATCTTTTGTA ATGAGTGCTCTGCCAAATCTGCCACAATCGCATCTTCAAAGAAGCCAGTCCGAGTCTGTGATGGCTGTTA CTCAGAACTGATATCATAATTTCCTTCAAGAAACCAGTCAGTGTCTTTGACAGCCGTTACTCACAGCTAA TATCCTAGCTTCCTACAAGAAACCAGTCGGTGTCTGTGACGGCCGTTACTCAGAGCTAAGATCCTAGCTT CCTACAAGAAACCAGCCAGGTCTGAGACAGCTGTTACAGCTAAGATCCTAGTTTCCTACAAGAAACCAGC TAGTGTCTTTGACAACCGTTACTCACAGCTAATATCCTAGCTTCCTACAAGAAACCAGTCGGTGTCTGTG ACGGCCGTTACTCAGAGTTAAGATCCTAGCTTCCTACAAGAAACCAGTCGGTGTTTGTGATGGCCGTTAC TCACAGCTAAGATCCTAGCTTCCTACAAGAAACCAGTCGGTGTCTGAGACAGCCGTTACTCAGAGCTAAT ATCCTAGCTTCCTACAAGAAACCAGTCAGTGTCTGTGACGGCCGTTACTCAGAGCTAAGATCCTAGCTTC TGGCAAGAAACCAGACAGTGTCTTTGACAGCCGTTTCTCGGAGCTAATATCCTAGCTTCCTACAAGAAAC CAGTTAGAGTCTGTGACAGCCGTTACTCAGAGCTAAGATTCTAGCTTCTTACAAGAAACAGTGTCACTGT GACATCTGTTTCTCGGATCGTGCCAACTTCTTTTGCTTTGATCAAAATTTGATATGAGTATTCACTGTGT TTCTGCATTTTTAGGTTCTTTTTTTGTCGAATAGACTAAAAGCAATCAAACTGTCTCATTACCAATCAAT AAAAAGCAGTTCTCATTTGTTACATGCACAGTAAAGGTGTTGCCTTTTGAAAGATTTCGTAGACAATTCA GAGCATGAAGCATTTTTTGTAAAGATTTTTATACGAGTAAAGCTTCTACATGTATTGGATTAAACTACAT TTAGGCAAGGCTTCTGTAGGTTGTGGCTGCTCTTGGACTGAAGCTGAGCATATTGTACTTTAATCTTTGA TAAATGAGGACTTGTTGAAATAATTATATAGACCTACATTTTTGTTTATTTTATTTGGAATGGCTGTCTC GGTATTAATTCTGTAAAATCATACATGCCTTTATCACATGTATTATTGTACAGTAATTGATTATGAAGTT TCGACATTTCGAACAGTTGTGCTTTGTTCGTTATCAGGAGACAACACTTTTTAGATTATTTCCCCTCTAT TTTGTAGCTGGACACAATGAAGCTTGTTTTTAGTTATAAATGCATGAATATTGAGATTGTTTTATATTTC TACCCAAGAGAAATTCGTAGTTTTAATCAAGACACTTTGTCCTTTGAGGTGGTCAGGAAATTCAGGTATT ACGAAGCTAAATACTGTATCATTTCATTATGATGTCACTTCTTTTTATACTCAAGGTTTTAAGTTTTTAA GATAACCATTGTTACATTTGGTTATTGTATCTAAGTTTGTGATGACATTTATAATTCTATTGACGATGGA AGGCACCTAGGCTGGGCATGGGTAATAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds