Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038205106.1 PREDICTED: Patiria miniata early endosome antigen 1-like (LOC119731829), transcript variant X5, mRNA TGTCGTGCAGCTGCAGCCGTGGCTATCGGACGCACAAGCTCCACCCCTTCATAAAACTTGAGAGCTCGAT GTTTCAAGGTTTTTCCCTCAGACAAATTGCATCTTGAACTGTGAGCCTAGTGCCCATTTAGCAGCAGCTG CAAGGAGTCACAATGGAAGCCTTGAAAAGGTTCAAGAAAAGGACGAAAGATGCAGTTGAGGGCAACAAAG GACAACCGCAAAAGGACTCTCAAGCTGCAGGAGAACAAGAGAACAGGGATGGAGATGTGCTGGCACTCAG ACAAGAACTGGAAGATTTACGTGTTTCATTGAAGGAGGAAAAGTGGTATTCTGAGGAACTGAAAAAAGAA GTGGACAAACTACAGCCAGGCCAATCGGCAGCTGGTGGAGGAGATGTGAACATGAAACGAGCAGAGGAAG ACAGAACAATGTTGTCGTCTGAGGTGGTTTTACTTCGTCAGCAGTTAGCGGAATCCATGGAGAATGCTAA AGCTTACAAGACTGTCAAAGATGCCATGGAGCAGAAAGCAGCCTCATTGGCAACTGAGATGGTGACTTTG AAGTCTAGTCTGGATGAGGAGAAGACGTTGCATAACAGCTTGAAGGAAGCCATGAAGCAAACACAGGTAG CCACAGAAATTGAGCTTCAAGACAGAGATTCCAGAATGAAGGCAGTCCAGTCTCAACTACTTCAAAGGCC TGGTGCTGATGATGTCATGGTGCTCAAGAAGGAACTAGTCTCCGTACAAACCTTAATGGATGAGTTGTCA CTAGCCAATGAAGCAGAGATGAATGAACTGAAACAGAAACATGAAGAACTCAAGGCTGACTATGACAAAT TACAAGCATCTGTTGCTGACAGCAGTAGTGGCAATGAAGCAGTCAAACAAGAACTAGAAGCCAAGATGGC AGAAAACGTCGCCATGTCCCAACAACTCAATGAAGTACGCAGTCATTTGCAAGATCAAGAGTCAGCATGT AGCAAACTGCAGCAGGAATTGGAGTTTACTAAGCAGCAGCAACTGCAGCAGGTGACAAGTAAAGACAGTC AGCATGCTGAGCTGCTGCAGCAACTTCAACAGTCCAAAGCTTCTCAAGCAGAGATGGAGACTGAGATATC CCAGATACAGAAGCAGTTAGCAGACAGTAGACAGATGTCAGAGGAGCAGCATCGACAGCTAGAGCAGCAA CTCGCTACAGCTCAGCTACAGATTGCCAAGACTGAGGGAACAGTGAATGAGAAAGATTCCCAAGTGACGG ATCTCCAGCTACAACTGGACATGTTACAGCAGCAATATGAGCAAGAGAGTATGAGTAACGACGAGTTGAG ATCTCAGCTACGAGAACGTCAGTCACAGATAGAAGACCAACAACGCTCACTCACAGACAAACAGGAGAAA CTTGCTGAGTTGGAGACGTCGTTGCAGAAGCAGAAAGATGCAGCAGAGAGATTGGAAGGAGAGAGAGCAG ACTTAATGGCCAAGATTGAAGCTGGAGAAGGCATATCCACAGCAATACAGCAACTCAGGCAGGAAAATGA AAGCTTACAAGATCAGCTATCTGAGCTGCAGTTGAACAAAGAGAAATTGACAGAGGAACATCGAGCAGCA ACTCAAGATCTTCATAAACAATTACAACAGAGTAAAGCGCAAATTGAGGGTGTGACAACACAGCATGAGA GGGCAGAGGCAAACTTGAAGGAGACAAGAACTAAACTGACTACAACTCAAGAAAAACTGGCAAATGCCGA GTCTGATCTCAAAATTAAGGGAGAATTACTTCTTGCTATGGAATCCTCCATGGCAACTCAACGAGCAGAT CTTGAGAGTCATCTTAGAACATCTCGGACAGGATTGGAAGATAAACAACAGGAAGTCAACAGGCTACAGG AACAACTGGAGAAGACTCGATCTGAATTATCAAGCACCAAGGACCAGCTAGCTGACCTTGATGTCAAACA AACATCAATTCAAGAACAATTGACGTCATCAACTCATCAATATTCATTGCTACAAAATGATCTACAGGCT AAGGTTAGTCAGTTAGCACTTGTTGAAGAGAACAAGAGGGAGTTAGAAGCACAGCTGAATGGTCAGGTGC AGTCATTACAGGCAAAGCTAACGGACAAAGAAGATGCATACAGTAAGATGGCTGGAGAATATCAACAGAC AAAAGAGCAAAATGCTGCAATAATCTCTGGACTACAAGGAGAGTTGGACTCAACCAAGACGACACTGGCA CAGACACAAACACAGCTACAACAACAGGTGGCCAAGCTTGAAGAGGAGAAGAAATCTGTTGAGGAATCAC TGTCAGCAACACAGCAGAATCTACTGCAGAAAGAGCAAGAATCTACACAACTACAACAACAAAAGGCTGC AGTTTTGGTACAAGCTGCGGAAAAAGTAGAGAAATTGACCGCTGATCTGCAGACCACACAGACTGAACTC AGCCAAACTAAGACTAATCTAGCTGCCAAGGAGCAATCTGTTCTTGAACTGACTGAACGCCTTGAACGTC TACAGACCGAGAAATCTGAGTTGCAGGATCAATTTAATGTGGAGCAAGATGTGGTGGTTTCTCTCAAGAA ACTCAATACTGATCAAGAAGCAACTATTGCTCAAAAGGTTGAGCTGTGTGGCAAGTTGGAGAAGCAGTTG GAGAGTAAAGAGAATCAACAGAAGGATTTACAGCAGAAGATTGAGGTTCTGGAGCAAGAGATTGCCAAGT CATGTGACCAGTGTCGCAACTATGAATCACAAGTGGTCAAACTTCAGTCACAAGTCAGGGATGGACAGGA GAAGTGTACAGCTCTTCAGATGGAGCTTGAGAACCTCCACGACACTTTGACAAAGACTGAAGACTCCTTG GAGAAAGTCCGAGGGAGTGAGGCATCTCTCATGAGCAGCGTGGAAGGATTACAGGAGGTCAAAATGGTGC TGGATGCCAGAGTGGCTGAACTAGATGAAGAGTTGAAGGTTGAGCTTGGAAGATTCCGGTCTTTGAAGCA GGAAGATACTGCCAAGCAAGCCGAAATCGGGAAGTTGAACGGAAAGATTGGAGAGTTAGAAGAATCTAAA TCCTCACTGAATGCTCAGCTGTCTGAGTTGCATACAGCAATCCAACATGAAAAGGAAGACAGAGCGAAGG AAGTATCAGCCATGCAGGAAGCTAAACAACTCCTGATCAAACAGAAGCTGGACCTACAATCCCAGTTGAT GGATAGGGAGACACAGTTAGCTAAAGCCGAGGTGGAATTCAATGAGAGTAAAGAAGTAGCACACAAAGTA CAGACAATGTTGAGAGATGAGTCGGCTGCATTGCAGAATAAATTGGCAACTGAGGAAAAAGCTAAGGCAG ATTTACAGCGACAAACAGAAGAGTTAGAGCAACGGTCCAGCATGCAACTCAGTGCACTGAATGAAAACCT GGCTACTCTCAGAAGCGATCTGTCACAAGCTGATACCAGGAAACAAGAACTAGAGAAAGTAGTGGATGAA CTGAGAGGAGAAGTAGCTGTTCTTGAAGCAACCATTCAGAATAATCAGGATGAACGAAGAACTCTTCTGG AAAGATGCCTTGCTAGTGAAGGTGACGTGGAGAAGCTACAGAGCAAAGTGGTCGAGCTTCGTCGGAAATT GGAGGATGCTCAGGCCGCAATGCATGAACTAGGACGAGAGAACCAGAACCTACAGATTGTCCAATCCAAG CAGATGGCTCGCAAATGGGCCGATGATACAGAGGTCAAGACCTGTATGTCCTGTGAAAAGGCCTTCTCTG TCACTGTCAGAAGGCATCACTGCCGTCAATGTGGTAACATCTTTTGTAATGAGTGCTCTGCCAAATCTGC CACAATCGCATCTTCAAAGAAGCCAGTCCGAGTCTGTGATGGCTGTTACTCAGAACTGATATCATAATTT CCTTCAAGAAACCAGTCAGTGTCTTTGACAGCCGTTACTCACAGCTAATATCCTAGCTTCCTACAAGAAA CCAGTCGGTGTCTGTGACGGCCGTTACTCAGAGCTAAGATCCTAGCTTCCTACAAGAAACCAGCCAGGTC TGAGACAGCTGTTACAGCTAAGATCCTAGTTTCCTACAAGAAACCAGCTAGTGTCTTTGACAACCGTTAC TCACAGCTAATATCCTAGCTTCCTACAAGAAACCAGTCGGTGTCTGTGACGGCCGTTACTCAGAGTTAAG ATCCTAGCTTCCTACAAGAAACCAGTCGGTGTTTGTGATGGCCGTTACTCACAGCTAAGATCCTAGCTTC CTACAAGAAACCAGTCGGTGTCTGAGACAGCCGTTACTCAGAGCTAATATCCTAGCTTCCTACAAGAAAC CAGTCAGTGTCTGTGACGGCCGTTACTCAGAGCTAAGATCCTAGCTTCTGGCAAGAAACCAGACAGTGTC TTTGACAGCCGTTTCTCGGAGCTAATATCCTAGCTTCCTACAAGAAACCAGTTAGAGTCTGTGACAGCCG TTACTCAGAGCTAAGATTCTAGCTTCTTACAAGAAACAGTGTCACTGTGACATCTGTTTCTCGGATCGTG CCAACTTCTTTTGCTTTGATCAAAATTTGATATGAGTATTCACTGTGTTTCTGCATTTTTAGGTTCTTTT TTTGTCGAATAGACTAAAAGCAATCAAACTGTCTCATTACCAATCAATAAAAAGCAGTTCTCATTTGTTA CATGCACAGTAAAGGTGTTGCCTTTTGAAAGATTTCGTAGACAATTCAGAGCATGAAGCATTTTTTGTAA AGATTTTTATACGAGTAAAGCTTCTACATGTATTGGATTAAACTACATTTAGGCAAGGCTTCTGTAGGTT GTGGCTGCTCTTGGACTGAAGCTGAGCATATTGTACTTTAATCTTTGATAAATGAGGACTTGTTGAAATA ATTATATAGACCTACATTTTTGTTTATTTTATTTGGAATGGCTGTCTCGGTATTAATTCTGTAAAATCAT ACATGCCTTTATCACATGTATTATTGTACAGTAATTGATTATGAAGTTTCGACATTTCGAACAGTTGTGC TTTGTTCGTTATCAGGAGACAACACTTTTTAGATTATTTCCCCTCTATTTTGTAGCTGGACACAATGAAG CTTGTTTTTAGTTATAAATGCATGAATATTGAGATTGTTTTATATTTCTACCCAAGAGAAATTCGTAGTT TTAATCAAGACACTTTGTCCTTTGAGGTGGTCAGGAAATTCAGGTATTACGAAGCTAAATACTGTATCAT TTCATTATGATGTCACTTCTTTTTATACTCAAGGTTTTAAGTTTTTAAGATAACCATTGTTACATTTGGT TATTGTATCTAAGTTTGTGATGACATTTATAATTCTATTGACGATGGAAGGCACCTAGGCTGGGCATGGG TAATAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds