Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030988762.1 PREDICTED: Strongylocentrotus purpuratus rapamycin-insensitive companion of mTOR-like (LOC115925203), transcript variant X1, mRNA CAAACTGCGCATGCGTTTACTGTCTGGTCATCATGGCGGCCACCATGTACAGGGGAAGAAGTCTGAGACG TTCAAAAGGCCGCCATGATAGTGGAGATACGGATGTACCATTGGATTTAAGCAAAGCTCCAAAGGATAAT ATCCAGGAGATACTTACAAGTCTGACCAGGAGAAGTAGCGTGACAAAAGGAAAGAAACTTGGACATCTCA ATAATTTTGTAAAGCTTATCAATCATGTATCAAGCTTTGACAAGCTGGGCTATTCAGTGGCTGAGATCGT ATGCTGTTTACGCCTGGCGGTGGTTCATCCAGCCAAGGAGATACGTGGAGCTGGAGTGAGGGCGCTTCGT CACCTTGTACAGGATGAGACGACTGTACAGGCCATGCTGGCCCTGCATGTCGATCGTCTTCTCATGAGAT CCCTGGACATTTATCAGCGCAATGATGTGGAGAGGGTTCAAGCTCTCAGGTTTATCAGGAGGATTCTCGC CGTCGCCCCGGCCTTCTGCCCCATTTCGCTGGTTCATGTCTTGGTTGCTATTAGCAACAGCGACGACAAG GAACGGGATCGGATGAGGAATGCATGCGTGGCGACGCTTTGTGAACTTGCCGTGTTGAATCCTGCTGCCT TTGCCCATGCTCGAGGACTCGGTGCCCTAGTGCGTAACATCTTAGACATGCAGCTACTGAGGATGAATGA AGCCGTCATGTTGACTGTTCTTCATCTGCTCAACCACCCAGCAAGCAGAAGATTCATCAGATTCAAAGTC GATCTTGAGCAAGTGATAGCTCCATTCACAGACTTCAACTACAGGCATACGGGCGACTCCTCAGAATCAC AAGCCAGTGAGAAAGAGGGTTTATATCAAGCTAGCAGGATGGCTATCGTGACTCTGCTAAGATCATGGCC TGGTATGATACGTCTGTGCCGATCTGATGCCACTGGGTTACAATCCTTGCTTGCTATCCTGTGTGTACAT AATGATGAAAACAGACGATACCTCTTGGAAGTGTTGTATGATATCTTCTACCTACCGATCGCAGAATGGA CTGATAATTTCTCCACAGCTCTACAGAGTATAGATTCTTGCCAAATGAAGACTTCGTGGAACCTGACGGA AGGCTTTGTTGTTGCTGAAGCATTGGACCTGCTTCCTAACAGGGCCATCACGAGACCAAACCTGACAGAG AACCACTTAGCCCTGCTCCTCCTTGCCTTTATCAATGCTGGTCTCTTAGAGAGTCTTGTAGAGGTGGTGA CATCTGACAATGCCAATCTGTCCATACAAGCAACCATCCTACTTGGTGAATTATTATATATGGCGGACAA GATACTACCTCCTGACTGTGAGCAGCATCATCACTGCCTACCTACACTCATGACACTTGCTGCATCCTTT GATGTACCACTGCTACAGAGAAATCGTGCGAGTGCGGCTGTGACGAACCTAGAGCGCCACCACGAGATGA AGAAGCGAGGAGTGATACCATGCAGCCTGTATCTAGACCACATTCTTAGCAACTCAGACATGTTTGTCAC CAGCCAGAGGGTGGTGGCTGACAAGAGCAAGGATATGGCAGTGGTATCAAGGTCGAGAAGCAGATCGTTC TCCTCGGCTTTGGGAATGCCTTCCTCATGGGACAAGATATCCAATCGGTCAACGCAGGAGAATGAGGATT CTGCAGTACAAACCATGATCAAAGAAACATTGGTACTCACAACTAAAGACCACACCGTCTGGAACTGGGA ACTTATAGGAGGAGCAATCAAGAAAGGAGGAGTTACACTGAAGAAGTTTGAGGATGCTAATGTTAACAGG TTTTTTCGTCGGTTGGTTGAGTTCTATAAGCCGATGAGTAAGCAGTACTCTGTGATCAGTCTCGGGCGGG AACTGGGCCGATCTAGTGAGATCCAAAGCTACACCATCATTGGATGTCAACTTCTCAACTTTCTTCTTAA TTGCGATGAAACCGATGCTGAGAAGCTCCTGATGGAGCTAACGGTAGACATTGGAGACTGTCTCCTTGAG ATCAGCATGGCTCCACGTAACGAGCTCCCTCCACAGGCCGTCTTCAGCCCATCAAGCATTCAGAACACAC TCAGTCAAGATTACTTTCTACTGGTTGGAAAGCTTTCAAAGACTCATGAAGGAGAGAAGATACTGGAGAA AGCTGGCGTCTTTCAATATCTACTGGATGTGTGCTCCATGCCTCACCATGAGACGTTACAGAAGCTGGTC GTGACCTGTCTGGACTACAAGAGAGATGGACTAGCCAGGACGGTCCTGGGCAAGATGTTAGCAGGATCTT CAGAGTCTATGAGGATATATGCAACCAATCACCTGCGTGTGTTGCTTCGAGCTCAGACACCGTTCTTCCA TACGTGGGGTGTAGAGCTTCTCATCACTCAGCTCCATGACAAGGCTCGTACTATCAGCGGCCTGGCTCTA GACATCCTGGATGAAGCGTGTGAAGATGATGCTAATCTACACAGTCTGGTTCATATGAGACCTCCATTGC TGCATATGGGTGATAAGGGTGCTCTATTACTCACTAGGTTCATCTCAACGACCAAAGGCTTTAAATACCT CCACGATGTGAACTATGTCTCCCACGAGCTAGACCGATGGTTCACCTACTTCAACCGCAAGTACGTGACC CTGATAGAGACGGAGATCAACGAGGCCTTCACCTGCTACCATCGTCCTCACGTCTCCGGTGGTTTCATAC GACGGTCCAAGGATGAACGTAGGCAGAGGAAAGATGTCTATGTACCGGTGCATCTCTACGGTCAGCTGGC CAAACATAGAGGAGGCTGTGAGCTCATTGAGAAACAGAATCATATTGCAGAGATGTGTGAGGTGATACGA TATGGTGATGTAGAGACGATGGACACTATACTCAATCTTAAAGCTGCATTGTGGGCATTGGGTCACACTG GTAGTACTACCTGGGGTCTGAAGCTGCTTCAGCAGGAAGGTATCATCCCTGATATCATCAGACTCGCTGA GGAGTGTGAGGTCTTCTCTATACGAGGGACCTGCTTCTATGTGCTAGGTTTGATCAGTAAAACAAGACAA GGAGCAGACAGCTTGAGCTGTCTAGGCTGGGAGAGCATCCGCCATAGCCGGGGCGAGTACTTCCCTGTGG TAGAGGACAGAGAGAACAATCTACCCACTGTCCTGCCCATCCCATTAGAGGAGTACAACCACAACCATCG AGATCTCTCCTCTCCCGTCAGCTTACCGAGCTTCAGTACCTACAGCATTGACAGCCCTAAGACTCCAGGA GACAGCAGCACTCCCAAGGTCGACCCCAACGTGAAGTTCTTTGCGGGAGAACCTAGTCCAGTACAGAGTC CTCTGACGCCAGGAGGACCACCAAATTTCTTTTTGGAGGTGACTGGGGATACAAACTCTGGAGGGGATGC TAAGGTGGTTCCATCCACCGAGGAGCGATCAATGTCACCCAGCCCTCTTGTTAGACTCAGTAAGAGAGAT CGAGTGAATTCAGCCACAGAGCAGCTACCAGGTATCAACGAGGTATCCGATGGAGGAAGAACGATCGTAG TTGATAGGGCATCAAGGACACCGTTATTGCGTAGAGCGCAGACGATGCCTACAATAGAAGGGCAAGATGA TGACGAGCCTCCGCCCTTTGATTCGTTGATTACCAAATTACGCAGCAATAGCGATGCCAGCTCAAGGATG TGTAAGGACAGGAGCTCAGAAGGTGTGCGATTCAACCAAGATGTGAATGAGAGATCGCGAGCGCAGTCAC GGGACAGGAGCCATAGTCTCAAGCGGCGCTGCGACAGCAATGAAAGTGGCAACAGCAGCATGGGGACCAA AAGTCGGAGCGAGAGCTTCGCCACGGACACATCTCAGACCAGCGGTGTGGGTTCGATGCATTCCAACCCC TCAAGTCCCCCCGTAGAATCGTCCATGTCTAGCGTAAGCACCGTCTCCAGCTCTATGACTGTTAAGAGTA TTCATTCCTCAGATACACTCCGTAAGAGGCACAATCTCAAAAGGACTCCAAGCTTTGTCAGGAGGATATC CAAGACTCTGTCACCAAACCTCAGCTCCTATTCCAATCTCTTTGAGACTAGTGCGGCTTTCACCTCTGTA AGGGATGCTCATGGTTATGCTACTTTGAAAGCATTGAAGCTACAACACAGACAGCTGAGCAGTGGAGAGG ATGATAGTCTGATTAAGAGAGCATCATCATTTGGGAATCCAAGCGAGATGAAGTTGCGCAGAGGATTGTC AGGAATGGTGGAGAGTATCAGCATGAGTTGTCTAGAGAGGGGGTCTGTCATGTCCAAAGCACCTTCTATG AAGTCTCTTCACCATACAAGCTCATCATCCACCACCAAGAATGAATACGTCGGTCTATGTTTACCTGTCG ATGTTACACTTATATTCCATTCTGATGAGAGTCAATACAAGGATGGTCACAGCGCCCCCACGAGTCACGC CGTATCACCTGCCATGACAGACATCCACATACCTCAGGTTCAGGTCTACAGCCCAGACTCTGGCTCCACA GCCAACAGTAATGCCCCTACTCACACCCTGGAATCACCAACCAGCCACCCCTCGGACCAACATGATATAG CCCAACAGCACACACTCAGCATGGGGGAGGCGGACTATTCCAATCTGAGAATAGGGGATGGATCAGGTGT GAGGGATGGGGAAGAGGAGGAAGAGGTACATATGGATAACAATCTGCATCAGATTGAGCATTGTCTGGCA TGTACAAAGGTTAGGACAAGGTCGTTGGAGAGTCAAGATGGTGATTCTATTCCTCATCCAGATGACCCAG CATCTTTGGTCATCTTCCAACCGGTCAACCCTCCTCAACCCCTCCTCATCCGTTCCCGCGGCAGCAGCTC GGCCAGCGCCAGTAACCCGTTCGGTAGCAACAGCGTAGATAACAACACCCCTACCAGCGTGGGTAGCTCA GGGACCAGCGTCTCCCAGTCCAGTCAAGGAGCCGTCAGGATGAGGGATGATACGCCCAAGGGAAGGGAGA TGATTAGGAGAGAGGTCATCAGATTGGTGATTAAGATGAGCAGCTCAGTGGGCATGAAGGCGCATGAAGA AGGATTGCTCGGATTACGTGAGAAGTTTCCTAAAGCCTTTGAGAGGACTTGTTTATTCTCTGATGTGATG AATCTAATAGCTACCAGTAGCTACAGACTCTCATCTAGAAGATTCATACAAGAACTCTTCCAAGAAGTTC ATTTTCATGAGCTCCATCATGAAGCCGAGAGAATTCTTGGTTTGGAAGAGAGCAGCGATACACAATCCAA CTCATCAGGATCCTGACCTCTGACCTTGGACCTCCGACCTTTGACCTCTCATTCTACTTGACCAATCAAG ACAGAAACATTGTGCTACTGCAATCAGTTCCTCAAGTTTTCTAGTCATCGAGTAACAAATCATGTGCAAT AATTTTAAGTGAACTTTCTGCAAATGTATCCTTCAGAATTGTTTGAGAATTTTATTGATGCAGTAAATGT AGACTAGAATTTTATTTTACCTGAAAGAGCCACGTTTCAGTGAGCTTGTAATAATGGATATACTCAGTGT GTCATATCATGATGGTATTTATTCATATTTTCAGGTTTTATTCATTGTAAATTGCTGGTCAGCACAGATA TATATGCTATGCTACATACAATGTAAAGGAACCTAGTTTATCTGGTAGGGTCTAGCTAGACAAGACTAGC AAGTTGTGCTTGATAAGTAGCACCTAGGCTAGAGAGATTATGTAAGATTGATGAAAAGTTGACATTGTTC ACAGATTGGACATGAAATGTTTATTTTTCAGACCTCTGTAACCGCTATTTGTTTCATTGATTAGACGGTG CTTACAAGAGCAGCTAGTACTTTACATTCAATAAAGAAAACAAAGTTTATTGATTCCTAGAAATGTATGT ATGTTGACTGCCCTGTACTTGTATGCAGGTACATGTACAAAAAAAACTGCTGCTGTCATAAGGCGGGTCT TGTGCTGTAGACTAACTCTATCTCTCTCCAATATGTAGGCCTTGTACTTGGAATGTCTAATTTATGCAGT TGTATGCAAGCTGATTTTTTTAATGCTGGGCATTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds