Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030988765.1 PREDICTED: Strongylocentrotus purpuratus rapamycin-insensitive companion of mTOR-like (LOC115925203), transcript variant X2, mRNA CAAACTGCGCATGCGTTTACTGTCTGGTCATCATGGCGGCCACCATGTACAGGGGAAGAAGTCTGAGACG TTCAAAAGGCCGCCATGATAGTGGAGATACGGATGTACCATTGGATTTAAGCAAAGCTCCAAAGGATAAT ATCCAGGAGATACTTACAAGTCTGACCAGGAGAAGTAGCGTGACAAAAGGAAAGAAACTTGGACATCTCA ATAATTTTGTAAAGCTTATCAATCATGTATCAAGCTTTGACAAGCTGGGCTATTCAGTGGCTGAGATCGT ATGCTGTTTACGCCTGGCGGTGGTTCATCCAGCCAAGGAGATACGTGGAGCTGGAGTGAGGGCGCTTCGT CACCTTGTACAGGATGAGACGACTGTACAGGCCATGCTGGCCCTGCATGTCGATCGTCTTCTCATGAGAT CCCTGGACATTTATCAGCGCAATGATGTGGAGAGGGTTCAAGCTCTCAGGTTTATCAGGAGGATTCTCGC CGTCGCCCCGGCCTTCTGCCCCATTTCGCTGGTTCATGTCTTGGTTGCTATTAGCAACAGCGACGACAAG GAACGGGATCGGATGAGGAATGCATGCGTGGCGACGCTTTGTGAACTTGCCGTGTTGAATCCTGCTGCCT TTGCCCATGCTCGAGGACTCGGTGCCCTAGTGCGTAACATCTTAGACATGCAGCTACTGAGGATGAATGA AGCCGTCATGTTGACTGTTCTTCATCTGCTCAACCACCCAGCAAGCAGAAGATTCATCAGATTCAAAGTC GATCTTGAGCAAGTGATAGCTCCATTCACAGACTTCAACTACAGGCATACGGGCGACTCCTCAGAATCAC AAGCCAGTGAGAAAGAGGGTTTATATCAAGCTAGCAGGATGGCTATCGTGACTCTGCTAAGATCATGGCC TGGTATGATACGTCTGTGCCGATCTGATGCCACTGGGTTACAATCCTTGCTTGCTATCCTGTGTGTACAT AATGATGAAAACAGACGATACCTCTTGGAAGTGTTGTATGATATCTTCTACCTACCGATCGCAGAATGGA CTGATAATTTCTCCACAGCTCTACAGAGTATAGATTCTTGCCAAATGAAGACTTCGTGGAACCTGACGGA AGGCTTTGTTGTTGCTGAAGCATTGGACCTGCTTCCTAACAGGGCCATCACGAGACCAAACCTGACAGAG AACCACTTAGCCCTGCTCCTCCTTGCCTTTATCAATGCTGGTCTCTTAGAGAGTCTTGTAGAGGTGGTGA CATCTGACAATGCCAATCTGTCCATACAAGCAACCATCCTACTTGGTGAATTATTATATATGGCGGACAA GATACTACCTCCTGACTGTGAGCAGCATCATCACTGCCTACCTACACTCATGACACTTGCTGCATCCTTT GATGTACCACTGCTACAGAGAAATCGTGCGAGTGCGGCTGTGACGAACCTAGAGCGCCACCACGAGATGA AGAAGCGAGGAGTGATACCATGCAGCCTGTATCTAGACCACATTCTTAGCAACTCAGACATGTTTGTCAC CAGCCAGAGGGTGGTGGCTGACAAGAGCAAGGATATGGCAGTGGTATCAAGGGAGAATGAGGATTCTGCA GTACAAACCATGATCAAAGAAACATTGGTACTCACAACTAAAGACCACACCGTCTGGAACTGGGAACTTA TAGGAGGAGCAATCAAGAAAGGAGGAGTTACACTGAAGAAGTTTGAGGATGCTAATGTTAACAGGTTTTT TCGTCGGTTGGTTGAGTTCTATAAGCCGATGAGTAAGCAGTACTCTGTGATCAGTCTCGGGCGGGAACTG GGCCGATCTAGTGAGATCCAAAGCTACACCATCATTGGATGTCAACTTCTCAACTTTCTTCTTAATTGCG ATGAAACCGATGCTGAGAAGCTCCTGATGGAGCTAACGGTAGACATTGGAGACTGTCTCCTTGAGATCAG CATGGCTCCACGTAACGAGCTCCCTCCACAGGCCGTCTTCAGCCCATCAAGCATTCAGAACACACTCAGT CAAGATTACTTTCTACTGGTTGGAAAGCTTTCAAAGACTCATGAAGGAGAGAAGATACTGGAGAAAGCTG GCGTCTTTCAATATCTACTGGATGTGTGCTCCATGCCTCACCATGAGACGTTACAGAAGCTGGTCGTGAC CTGTCTGGACTACAAGAGAGATGGACTAGCCAGGACGGTCCTGGGCAAGATGTTAGCAGGATCTTCAGAG TCTATGAGGATATATGCAACCAATCACCTGCGTGTGTTGCTTCGAGCTCAGACACCGTTCTTCCATACGT GGGGTGTAGAGCTTCTCATCACTCAGCTCCATGACAAGGCTCGTACTATCAGCGGCCTGGCTCTAGACAT CCTGGATGAAGCGTGTGAAGATGATGCTAATCTACACAGTCTGGTTCATATGAGACCTCCATTGCTGCAT ATGGGTGATAAGGGTGCTCTATTACTCACTAGGTTCATCTCAACGACCAAAGGCTTTAAATACCTCCACG ATGTGAACTATGTCTCCCACGAGCTAGACCGATGGTTCACCTACTTCAACCGCAAGTACGTGACCCTGAT AGAGACGGAGATCAACGAGGCCTTCACCTGCTACCATCGTCCTCACGTCTCCGGTGGTTTCATACGACGG TCCAAGGATGAACGTAGGCAGAGGAAAGATGTCTATGTACCGGTGCATCTCTACGGTCAGCTGGCCAAAC ATAGAGGAGGCTGTGAGCTCATTGAGAAACAGAATCATATTGCAGAGATGTGTGAGGTGATACGATATGG TGATGTAGAGACGATGGACACTATACTCAATCTTAAAGCTGCATTGTGGGCATTGGGTCACACTGGTAGT ACTACCTGGGGTCTGAAGCTGCTTCAGCAGGAAGGTATCATCCCTGATATCATCAGACTCGCTGAGGAGT GTGAGGTCTTCTCTATACGAGGGACCTGCTTCTATGTGCTAGGTTTGATCAGTAAAACAAGACAAGGAGC AGACAGCTTGAGCTGTCTAGGCTGGGAGAGCATCCGCCATAGCCGGGGCGAGTACTTCCCTGTGGTAGAG GACAGAGAGAACAATCTACCCACTGTCCTGCCCATCCCATTAGAGGAGTACAACCACAACCATCGAGATC TCTCCTCTCCCGTCAGCTTACCGAGCTTCAGTACCTACAGCATTGACAGCCCTAAGACTCCAGGAGACAG CAGCACTCCCAAGGTCGACCCCAACGTGAAGTTCTTTGCGGGAGAACCTAGTCCAGTACAGAGTCCTCTG ACGCCAGGAGGACCACCAAATTTCTTTTTGGAGGTGACTGGGGATACAAACTCTGGAGGGGATGCTAAGG TGGTTCCATCCACCGAGGAGCGATCAATGTCACCCAGCCCTCTTGTTAGACTCAGTAAGAGAGATCGAGT GAATTCAGCCACAGAGCAGCTACCAGGTATCAACGAGGTATCCGATGGAGGAAGAACGATCGTAGTTGAT AGGGCATCAAGGACACCGTTATTGCGTAGAGCGCAGACGATGCCTACAATAGAAGGGCAAGATGATGACG AGCCTCCGCCCTTTGATTCGTTGATTACCAAATTACGCAGCAATAGCGATGCCAGCTCAAGGATGTGTAA GGACAGGAGCTCAGAAGGTGTGCGATTCAACCAAGATGTGAATGAGAGATCGCGAGCGCAGTCACGGGAC AGGAGCCATAGTCTCAAGCGGCGCTGCGACAGCAATGAAAGTGGCAACAGCAGCATGGGGACCAAAAGTC GGAGCGAGAGCTTCGCCACGGACACATCTCAGACCAGCGGTGTGGGTTCGATGCATTCCAACCCCTCAAG TCCCCCCGTAGAATCGTCCATGTCTAGCGTAAGCACCGTCTCCAGCTCTATGACTGTTAAGAGTATTCAT TCCTCAGATACACTCCGTAAGAGGCACAATCTCAAAAGGACTCCAAGCTTTGTCAGGAGGATATCCAAGA CTCTGTCACCAAACCTCAGCTCCTATTCCAATCTCTTTGAGACTAGTGCGGCTTTCACCTCTGTAAGGGA TGCTCATGGTTATGCTACTTTGAAAGCATTGAAGCTACAACACAGACAGCTGAGCAGTGGAGAGGATGAT AGTCTGATTAAGAGAGCATCATCATTTGGGAATCCAAGCGAGATGAAGTTGCGCAGAGGATTGTCAGGAA TGGTGGAGAGTATCAGCATGAGTTGTCTAGAGAGGGGGTCTGTCATGTCCAAAGCACCTTCTATGAAGTC TCTTCACCATACAAGCTCATCATCCACCACCAAGAATGAATACGTCGGTCTATGTTTACCTGTCGATGTT ACACTTATATTCCATTCTGATGAGAGTCAATACAAGGATGGTCACAGCGCCCCCACGAGTCACGCCGTAT CACCTGCCATGACAGACATCCACATACCTCAGGTTCAGGTCTACAGCCCAGACTCTGGCTCCACAGCCAA CAGTAATGCCCCTACTCACACCCTGGAATCACCAACCAGCCACCCCTCGGACCAACATGATATAGCCCAA CAGCACACACTCAGCATGGGGGAGGCGGACTATTCCAATCTGAGAATAGGGGATGGATCAGGTGTGAGGG ATGGGGAAGAGGAGGAAGAGGTACATATGGATAACAATCTGCATCAGATTGAGCATTGTCTGGCATGTAC AAAGGTTAGGACAAGGTCGTTGGAGAGTCAAGATGGTGATTCTATTCCTCATCCAGATGACCCAGCATCT TTGGTCATCTTCCAACCGGTCAACCCTCCTCAACCCCTCCTCATCCGTTCCCGCGGCAGCAGCTCGGCCA GCGCCAGTAACCCGTTCGGTAGCAACAGCGTAGATAACAACACCCCTACCAGCGTGGGTAGCTCAGGGAC CAGCGTCTCCCAGTCCAGTCAAGGAGCCGTCAGGATGAGGGATGATACGCCCAAGGGAAGGGAGATGATT AGGAGAGAGGTCATCAGATTGGTGATTAAGATGAGCAGCTCAGTGGGCATGAAGGCGCATGAAGAAGGAT TGCTCGGATTACGTGAGAAGTTTCCTAAAGCCTTTGAGAGGACTTGTTTATTCTCTGATGTGATGAATCT AATAGCTACCAGTAGCTACAGACTCTCATCTAGAAGATTCATACAAGAACTCTTCCAAGAAGTTCATTTT CATGAGCTCCATCATGAAGCCGAGAGAATTCTTGGTTTGGAAGAGAGCAGCGATACACAATCCAACTCAT CAGGATCCTGACCTCTGACCTTGGACCTCCGACCTTTGACCTCTCATTCTACTTGACCAATCAAGACAGA AACATTGTGCTACTGCAATCAGTTCCTCAAGTTTTCTAGTCATCGAGTAACAAATCATGTGCAATAATTT TAAGTGAACTTTCTGCAAATGTATCCTTCAGAATTGTTTGAGAATTTTATTGATGCAGTAAATGTAGACT AGAATTTTATTTTACCTGAAAGAGCCACGTTTCAGTGAGCTTGTAATAATGGATATACTCAGTGTGTCAT ATCATGATGGTATTTATTCATATTTTCAGGTTTTATTCATTGTAAATTGCTGGTCAGCACAGATATATAT GCTATGCTACATACAATGTAAAGGAACCTAGTTTATCTGGTAGGGTCTAGCTAGACAAGACTAGCAAGTT GTGCTTGATAAGTAGCACCTAGGCTAGAGAGATTATGTAAGATTGATGAAAAGTTGACATTGTTCACAGA TTGGACATGAAATGTTTATTTTTCAGACCTCTGTAACCGCTATTTGTTTCATTGATTAGACGGTGCTTAC AAGAGCAGCTAGTACTTTACATTCAATAAAGAAAACAAAGTTTATTGATTCCTAGAAATGTATGTATGTT GACTGCCCTGTACTTGTATGCAGGTACATGTACAAAAAAAACTGCTGCTGTCATAAGGCGGGTCTTGTGC TGTAGACTAACTCTATCTCTCTCCAATATGTAGGCCTTGTACTTGGAATGTCTAATTTATGCAGTTGTAT GCAAGCTGATTTTTTTAATGCTGGGCATTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds