Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041626605.1 PREDICTED: Lytechinus variegatus muscleblind-like protein 3 (LOC121429542), transcript variant X4, mRNA TTTGCATTTTCCGCGAATACACCCACCCCATGCAGGGTCTCTGGTGACTAGACTATGAACCCCAATGAGT GACTGGTTCCCAAGTATAGCATTGCATACATGAATGATCTGAAGTATGTGTGCAGTGTGTCTGCACATTG GAGTCATCACCACCACCATACCTCTCGCTCTCGTTCGTTCCGTGTACAGCCAAGTCAAAGAGCCAGTTCA CCCAATCAGCTTTTTTATATCAGCCTGCAGGAATAGCACACCGGGTCGCTGTACAAGGGAGAACTGCAAG TACTTGCACCCGCCCCCACACCTCAAGACCCAGCTGGAGATCAACGGGCGTAATACGCTCGCCACCCAGA AGATGCTGCAGAACCTCCAGAACCAGCAGCTCCAGCAAGTAGTCGGCATGACCAACCTCCAGCTCCAACC CTCGCCCAGCTCCACCACCCTTCTGACGGGTAGCCAAGGTCTTCAGGCAGGCCCTGGGAGTAACCATCAG CTTGTGATCCCAACGTCCTCTCCATACCCGGGAAAGGATTCTACCGCTGCCTCGGTACCTGCATCATCTT CCCTTTACCACCAGCATGCGCCCCCTCAAATACAGTACAACGGCCTGCAAATTGTGCCCCAATCGCCCTA CAGTATACCTGCCAGCGGGCAGGGACCAACGATGTCAGTGGGGACCCACTCCTCCACCAACCCCTATGGG TCGTACTTCATGCCCTTCCCCAGCCCCAATATAGGACAACTCACACCCAGCCAGGCATCCTCTATGGGGC TAGTACCAGAGATACCGGGGCTACCAGCCCAGATGATACCCAGTCACACCAGCCAAGGTTTGCCCATCAT ACCGTCGATGAAGAAGAATGACAAGCTGGAGGTGTGCAGGGAATACCAGCGGGGCAGCTGCTCGCGGGGT GAGGCGGAGTGTAAATTCGCGCACCCCGACGAGCATATCACTCTAGACACCACCGACAACACAGTTACTG TCTGCATGGACCACGTCAAAGGGCGCTGCTCGCGTGAAAAATGCAAATATTTCCATCCACCGCTACACCT TCAGGCCAAAATCAAAGCCGCCCAACAACAAGGCAACAACATGGCCGCCGTGCAGACTCTATCCGGGCTG GCTCCACCTCCTCCAAAGAAGATAACTGCCGGTAGCTTAGGTCACCAAGGGACGGGGCACATGATGAATA TCTTCTCGCCTTCACAGTTCCCATACCACCCCCAGCTTGGACCAGCTATGATGACATCACATCAACCCAC ACCAGTAGTGCCAACGCCATTCCCAGTCATGCCTTCCATGGCTCCGCCAGGCCCCGGACAAAGTATCCCG CTCTTCGCTCCCATAATGCCAACGCAGGTACATCCCACCAGACATCCACAATCTAATGAGACCATTCCAG TCTGCAGAGACTTCAAGTCAGGTAGCTGCAAAAGACCAAGTTGCAAGTATGCTCACGTTACAGAAGATTA TATAGAAGTAGTGGACGGGAAGGTCACGATGTGCCGTGATGCGGTACGGGGGAAATGCCTCCGCGCCACC TGCAAGTACTATCACGCTCCTACTCATCCTCCTGCTACTACTACTACTACTGCTACTACGCACGTTACCA TGGCAACCTCTTCCTCTGCATCTTCTGCTTGCTCCTCCTCCTCCTCATCAGCAAACACCTACATGGCTGG TAGCACGGCAGCCCCTCCTGGTCCCCACTACACGGCTTCCAGCACGCCCACGGGCACCATCAACAGCACA GCCGCCGCCGCTACAACAAATGCTAGTGCTCCTGCTGCTGCCGCTACCGCTGCCGCCAATGTCTTGCCGC CACAACCACTTCAGCCGCAACCTCTCCCTTTCTCAGCGGCTTCGGCTGCGGCGGCTGCTGCAGCTGCCGC GGCCAACGCCGCAACCAACCCATACCTCCACCACCACCACCATCATCACCAACATCCCGCATCCACAGTC ATGCCCATAGCTTTAAGCAATGGCTACCCGGCACAAGTCTTGCCTTAAAAAGAAAAAAAGACATAAGATC AAAAACGTAGATGAAGTAGACTCAGATAATGAGTACAAAAGCTGTTGAGCATGATCAAAATTAGACAATC AATTCCTTTTCTGTTCTTTTCTTTTGTTCTACACAATCATTCCAAAATCTGGGAAACCAATATCCTTGTT CTTTTTTGTTCAATTCTAAATCCCCCTGTCTACATTTGACTTTTAAAATTGTCATTCTACTTCTCTTAAA TCCTGTTCATTCAACTCCCTTTCTCTATATTCCTGTTGAGAATTTGAATGCACTTCAGATGTATTATTGA AAAAAGTTTATATCCTATCCTCAACATTTAAATTATCTTCCTATATATTTGAATTTGAATATCCCTTAAA ATTTGTTAAGAGAAATAACATATTACTAAATATTATAGTATATGAACATTACTTAAATATTCCCTTTTTG CGATTACTCTTGATGTAATACTGCACTTAATACACCCTCAAACACTTCTTATGGTAATCCAAAGAATTTC CGAGATGGATATTCAAAAGATACATCCCTTGTATTATTATTTGATAGAACTATCCTCTGTACACACCCCT CTCTCTCTCTGTCACCCTTTTCTTTGTATAGTCCCATGTGTTGTGTTCCATGCTGTATGTTTTCTTTTGC CTGGCATTATATCACATCTTATTTACACACAAATTTTGCTCGTATATCATCATCATCATAGCTGTTGAAT GTTTAGGAAGGCTTGTCAAACGGGGCATGTAACATCGATGTGACGGTAAAAGGCTGTATGTGTTTGCACC TTTGAAGTTTATATATATATATATATAAAAGGTATAAAGCTTGCTTGTCCATTTATATGTTTGCATTCAT CAAAGTCTTGGAAACGAAATCCAAACTGCACTCATGCTCGAATACCATTCCTTGAGAGCCTATTTTGCAA TCTAAATGTAGCAAGCAATCATGATCGCGTCTGTGTAGTCAAAATGGCTGGCCGAATACTTGCTTCCATG AAAGCTGCATCCAAGCTGAAAATCAAAAGCATTGATGTTTGATTTCGCTTTAGGAATGTTAAGACCAATG AGTGATTATGGAATCGTAAATGTAGGTGACGGCTAGTGGTCAGAGATGAAATGTGCATGTCAATGAGCAA GCTTGCTCCTACTTTGAGCTTTGATTGAAGATAAACTGCTTAGAAATGATAGAAGTAGGAGTACTGGTAG ATGGGTATCGATAGATGCGGTGTTGTGTGGGTTGTTAAACAACTATTCCGTTTCCTTTAGAAATTGAAAG AATTCTCAATGTTGAGTCAGAAACTGGAAATTTAAGTCTCATTGTCGTAAAAGTCCCTTTTCAAGAGAAG AACAGACAGAATTTTTAAATTGAGATATTTGATTACGACATTCTGCCAATGCTGTTATTTGATTTGCCAT TTTTTTTTTCAAATTGCCAATCGGGATCTGCATCTCACAATTTGATATTGAATATTATCAACTCACCCCT TATTATCAACAATTATCTCATAATCTCTGAAATTGCTCTCCTATTTCCAACAATGATAATTGTAAATAAA GTGGTATTGTACATAAATGATGTATCATTTTTTTATTGTATTGAAACTTTTTTGCGATGGTAATCTTGAA TTACATAAACATGTTCATAGTTCTTGATGGTACAACTCATTACTAATTTTTTGTAAATATATGATAATAG ATATCATGTTTGGCATATTCTCTGTCATTTTAAAAGTGACAATCTGCCTTGTTTAATCAATCAATGTATA CTTATTGCACAGAAGAACAGACAATCCATATTTTTTATTGTTTTATTTTCCTTATATTACCGCTTGCACT TTACTTACAAGAAAGATGCACAGAAATTACATCTTCTTTTTATTCACATTGTAATTTGTACTTAATACAC TAAAATTTTAAAGATCTTGCCAAACTAAACCAGTCAGAGATTGTTTAAAAATGTACCATATTTTTTTTAT TGCTGAATAACCTGAAATAATGCACCCGCTGCACTGGAGCAATTTTTTGCCTTAAGGTGTCCTAGATGAG ACAATTAGAAAAGAAATAAGGTAAATACAAGTCATGATCTTCCTATGCTAATGCATTTATAGTACATATA ATGCTTGAATATAATAACTGGCTTTATAGATAATCATTTTCAATTCAGGTTAAAGTGATAGTGGTGTGGG TGTGCATGTTGGATCAGTAGACTAAGGCCTTGAATTTGGTAATGAATGATATATATTTAAAAAAAATGTT TGCTTAAAGCTTGCAGCTTATGCTTGAATGCATACAAAGTAGTTCTAAGCTTTGTTTTATGAAATGACTT TTGCTTTGCTTTAAAAAACCCCAAAATCCAAAAGGTGTTCAATGAAATGAGCTTTTCAAATAAAATATAG CTTTCATAACCCAACTTTATTTTGTGCTTGAAGTTCATTTTCCAAATTGCAATGGAGGCATATCCCCCTT TTGTCCCCCAAAGCAGACAAAGTCTGGTCTCATTTTTTTCCTTTTGAATTTTCTTTTTACAGTTCCTCTA ACATTCCAGGAAGTCTTGATTCATATGTGTTTTATTATTTCCTCTACAGAAAACATTAATTTGCAATGAA CAATATTCCCCCATTTACCAAATCCTATCTGATATGGAAGAAGATTGCCAGTGATCCCTTTAATATAATT TAAAACAATTTTTAATTCAATAGGTTTTTTTTTTCGTTTTAATGCAAACACAAATTTTAACATTTGTCTG GTATCGGACAGAAGTTCATTTTAATATTTCATTCATAATGATAATAATAATGAATTGCATTTGTTTTTTT ATTTCTTATACATTTCACCCATTTTAACAATTTATCCAAGAAAAGCCCTTGTCAATCAGTGGCTCTTTTT GTCAACCTTAGCTCAATCCAATAGAACTACTTATGTTATTGTTATTATTTTTATGGAAGCAAAATGTACA TACATAATGGTCATGTATGTCATTTCTTGATGCACTGTTCTACGCAAAGGTTTTTTGTGAAAAACCAAAC TTGCTCTAGTCATGGTGCAGAGCATAATGTATTCATAGATAAATGTGCCTGTTGATTAAATTGGGCACAA TTGCTGATATACGGTAACACTTTGGATATATGTAGCATATAGGACTGGAGGTCCGTATGGCAATAGAGAA GTTTATTAGCATATAATATGTAGCTTTGAAAGTCTAGTACGCAATGCTTGTGTGTATATCAGAGATAAAT CATACCAAAGTACTCAGAAATTTCAAAGTGATGATGAAAACAAAAAAATGTTTGAAAAAAAATAGGAAAA CCCACAAAAAAAGTATATAAAAAAATGTTCAAACTGAAATTATCAGTGTCTGAAATGTTAGCTGTTAAAT GGATGTTTTATCCTACGAATAGATTTGTGATTCTATATTTTAAGTACTGTTTATAAGAAAACATGGTTGA CTTTTTATATTCTTTTAGTGAACAACAAATTTTGAGTGATTTTTTTTTAGATGATTTTGTTGTCATTGAA ATTGTATTTCCACGGATTCATTTCTTTTTCTCCAAAAATATTGTACATTTTGTGAGATGGTATTTTTTAG TTTCCTTTTTCTTTTGGTCATTTCTTCTTTTTATTGGAAAAGTTTTGATTTTTGTGTGTAAGTTTTTTAT TTTTGACATTTCCCCTTAGTGTGTATAGAAAATATTGTGATTTTTTTTCCTATATGAAATTCAATATAGC TCATACCTTTTCAAAAGTTTTGTTGAATTCCGACAAGTCGATGTACATTTAATAGGAATTTTACATGTAA GTGATTGGCCAATAGGATGCCATGTTATATAGTGTCTTGGGGTTTGAGGAGATGATAATATATGATCCAT ATTATGCACTTGCACTATGTAGAGAAAATGGGAAGAGAATGAAGGAAGTGGGAGGTAGAATTGATGCAAA AAAAAGAAGAAATAAATGCATTTAAAGTGTTCAATATTTGTGGAGGTATTTTCATACACTGCTGTTTGGG AAGTCTGTTTAAAGATGACAGAAATTTGAAGCTTTTCCTCAAACCATGGTCTAATTCAAAAGTAAAGGAA AAGAAGATGAAAAGAGAAAGTAAACTATACCCATAATGCATTGTTCTATGCCACATATTTATGTATACAA TGAAATTAAATAGAAGTGTGATTTGATGTTATCGTCTTCACCCCAAGATGGCTATTGAACATAGCAGAGA TGGTGCACTTTGGACTCCATTTATCACCTTGTTTACAGGAAGTGACTTTTGACATGAGGTCAGAGGTTAA AAAGGGTCAAACCTTTGTGAAAAGCACTTGGTCTTTATTTTTTTCCATTCTGTAGCGAGAACACACTCTT ATTATCCTGTTTATGTAGTCTATTAAATGGTAAATCTATTGTATGATAATAAGAAACATTGTTATTTGTA TCATGATGGTAGTTATCCTTATGGTAAGTTGTATCTTTTAAAGAAGTTTTATGAATACTAGATATGATGT CTTTAATGTGTGATGTTTACATTGTATATGAAATCTGAAAAGTTTTTTGATTCATTATGTACAAGTCTCA GAGAGACTAAAAAAAATCAATTGTGAATACAGGAAAATACTATTCCACGTAAAGAACCAAATTTTAGCGA TGTTTTAGGAAAGTAGGAGTTACAAAGAGTCTGATCGATTCTCTCCCTCATTGCGTCTCAAACTCTGATC ATCGCTCTGATCATCGCTGAGAGGGAATGGGGGAGAGGAATGGATAGTTTCCATTTTCAAGACCAACTTT CTTGTAGTACATCATTTTATATGAGATGAAGAGGAAGGAGCAAACCTCAGTATTGTATGCTAGCGCATGG GTCCAAGACCAGACATTTAAAAAAAAAAAAGAAGAAAACTTAGGATGCAAACAAAAAAAAATCAGCGCAA GCATGCGGTAATAATGGGCTTCTTTTGAATTACCTCTTGGAAATGGAAATGAATTAAAACAAAACTTGCT GGAAAGCCGATAAAGTGGTAGAAGGGTCTTCAATATCCCATTCAATCATGAACCTGAATGTTTTTTAAAG AGGAATGCCATTCGCGCGATCGAATAAGATCACATCTTGGCTATGGTGACCCTCTATATCTTGTGTCTGT CGTGATGTCCATGTTGTGTGTTGACACAAGTGTGGCACATTTTTTGTAACGTCCTGTAGTATCTGCTGCT GCTGCTATTGCTGCTTTTGCCTGAATCGTCAAAGAACCCCTTTTACAATGAAAACAGGTTTGGTTAACCA TAATAGGGAATTATGGATAGGTTGGTAGTGTACTTCATTTCATGTTGGTAATTTAAAAGTGTAATACATG TGGGATTCCGGATAGGAAAACTTGATGATGTCAAAGTGACTTTAAGAGAAATTAATCATAATTCTACTTT TGAAAAAAATATTAATCATGAAATTATTAAAGGTTATTGATCAACTGTGCCAAAAGTCTTGAAGTAATTT TCTTGATTGACATCTGAAATTTTGCGAGCAGGAAGCAGATTGTTATATTTCCCAAGGAAACGAGAGGAAG AAACATCTAGGAAGAAGAACAGTACTATGGAACGGTTGTCATGGAAACTTAACAATATTGAAATATAGTC GTAAATCACAACAAGCATTTATAAACATCACAGAATGAGCTTTGATTCTGGTTAATTATAGGTAAATGAG TTGGTATTCAAATGACACCAATAAAGGTGGGGGATAATTTTCCAGAGCAAAAAATACCACATTTTGAGAG TCAAATGCCATAATAATAAATATAATAATGATTGTGGGCATTAACGGAAAGACAAGACAAACAGAGATTT TCAAACTGTTACAATCGGCATTGATTATTGTGAAATTTTGGCAAATTAACAGTCCTTTAAAAATAAATGT TCCCATAGAATATATAAATCAGTGATTGTGTCACCGATGTAACAGCACTAGTGGTAGTTTAGTGTATAGT TCTCACTTACTTACATATACGAGAACTCTGAATTTTGTACATGTAGTAGTATCATTATTAGTAACTCTTC AGTCGGTTTGAAATACTGTTGAAATACTTTATTTTTCAAATTTTAATAACTTGATTATTGACTTGTTTAA ATCTTGTACTTAATCAAAACTGATGTAATTCAATATTCTGATTTTTTACCCTAATCTGTATAGCGAGATT CAATTTTTGTATCATAAAATTCATAAGTCATGAACTGGATTTAAATTTCGGAGGATATATTTTTATGTGA GATATGACATTTTTTTCCTTTTGAATTTTTTAATTATAAGAATCATGGTGTTAATTGTATATTGATATGA TTGTACTTAATATAATTCTTAAGATTATGTAACCTTAGCTGAATGTCAGTGTGGTTTTGTTGAAATCTCC TCATTTTGATACTATAAAATATCTCTCTCATGTTCAATAAGAATATCAGTTTAGAAACTTATATCACATA AGAGCAGGAAGATTCAATGGTTGTCATGGATATGAACCATTTTGGCAATATAATAAGAACACATAAGCTC AATGAAATTTACTTACCGATTCAACATAATCAACTCGGAATTTATTAATTTACTTGTCATTTTACTACAT GGAAATCCTAGGGGAATTTTCAATTGCAATGTAGAAACTGCTAGTTTGGAACATCAATTTTTAATTGTAA GTAGCGTTACATTTTTTTGTAGAAAAATAGTGAATTCCAAATTATTCTTCATGGGTACAGAGTGAAGAAG AAATATTGTTTGATATTTACCCAGTTTGTAGTATTTGAAGTACTTGTCTTGATCCACTACAGGAATATGT AGCTCAAAGGTTTAATACTTTTTTTGTAAGCACGAAACTGTCTGGTGAAAACACTCACAGCTCATGCTCA GACGGGTCAACACACAATCGCTTTTGCTTTCTGATTGCATATCTGCGCTGCTTTTTCCTTCTATCAAATG TAAATAATTGTGAAATATGTTCAAAACAATTTCACATGCGGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds