Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041626607.1 PREDICTED: Lytechinus variegatus muscleblind-like protein 3 (LOC121429542), transcript variant X6, mRNA TTCCGCGAATACACCCACCCCATGCAGGGTCTCTGGTGACTAGACTATGAACCCCAATGAGTGACTGGTT CCCAAGTATAGCATTGCATACATGAATGATCTGAAGTATGTGTGCAGTGTGTCTGCACATTGGAGTCATC ACCACCACCATACCTCTCGCTCTCGTTCGTTCCGTGTACAGCCAAGTCAAAGAGCCAGTTCACCCAATCA GCTTTTTTATATCAGCCTGCAGGAATAGCACACCGGGTCGCTGTACAAGGGAGAACTGCAAGTACTTGCA CCCGCCCCCACACCTCAAGACCCAGCTGGAGATCAACGGGCGTAATACGCTCGCCACCCAGAAGATGCTG CAGAACCTCCAGAACCAGCAGCTCCAGCAAGTAGTCGGCATGACCAACCTCCAGCTCCAACCCTCGCCCA GCTCCACCACCCTTCTGACGGGTAGCCAAGGTCTTCAGGCAGGCCCTGGGAGTAACCATCAGCTTGTGAT CCCAACGTCCTCTCCATACCCGGGAAAGGATTCTACCGCTGCCTCGGTACCTGCATCATCTTCCCTTTAC CACCAGCATGCGCCCCCTCAAATACAGTACAACGGCCTGCAAATTGTGCCCCAATCGCCCTACAGTATAC CTGCCAGCGGGCAGGGTCAAGCCCAAGTGCATACGAGCCAGGCTGCTACAGACATCAACGCAATGTACAG TCCTTTTTACTTGCCCGTTGCAGTGTCCATGGGACCAACGATGTCAGTGGGGACCCACTCCTCCACCAAC CCCTATGGGTCGTACTTCATGCCCTTCCCCAGCCCCAATATAGGACAACTCACACCCAGCCAGGCATCCT CTATGGGGCTAGTACCAGAGATACCGGGGCTACCAGCCCAGATGATACCCAGTCACACCAGCCAAGGTTT GCCCATCATACCGTCGATGAAGAAGAATGACAAGCTGGAGCTTCCGACCACGCCCGATACACCGAGCCTG AAGCGTCCGCGGGACCCCGCTGACGACGCAATACTGCAGACTCTATCCGGGCTGGCTCCACCTCCTCCAA AGAAGATAACTGCCGGTAGCTTAGGTCACCAAGGGACGGGGCACATGATGAATATCTTCTCGCCTTCACA GTTCCCATACCACCCCCAGCTTGGACCAGCTATGATGACATCACATCAACCCACACCAGTAGTGCCAACG CCATTCCCAGTCATGCCTTCCATGGCTCCGCCAGGCCCCGGACAAAGTATCCCGCTCTTCGCTCCCATAA TGCCAACGCAGGTACATCCCACCAGACATCCACAATCTAATGAGACCATTCCAGTCTGCAGAGACTTCAA GTCAGGTAGCTGCAAAAGACCAAGTTGCAAGTATGCTCACGTTACAGAAGATTATATAGAAGTAGTGGAC GGGAAGGTCACGATGTGCCGTGATGCGGTACGGGGGAAATGCCTCCGCGCCACCTGCAAGTACTATCACG CTCCTACTCATCCTCCTGCTACTACTACTACTACTGCTACTACGCACGTTACCATGGCAACCTCTTCCTC TGCATCTTCTGCTTGCTCCTCCTCCTCCTCATCAGCAAACACCTACATGGCTGGTAGCACGGCAGCCCCT CCTGGTCCCCACTACACGGCTTCCAGCACGCCCACGGGCACCATCAACAGCACAGCCGCCGCCGCTACAA CAAATGCTAGTGCTCCTGCTGCTGCCGCTACCGCTGCCGCCAATGTCTTGCCGCCACAACCACTTCAGCC GCAACCTCTCCCTTTCTCAGCGGCTTCGGCTGCGGCGGCTGCTGCAGCTGCCGCGGCCAACGCCGCAACC AACCCATACCTCCACCACCACCACCATCATCACCAACATCCCGCATCCACAGTCATGCCCATAGCTTTAA GCAATGGCTACCCGGCACAAGTCTTGCCTTAAAAAGAAAAAAAGACATAAGATCAAAAACGTAGATGAAG TAGACTCAGATAATGAGTACAAAAGCTGTTGAGCATGATCAAAATTAGACAATCAATTCCTTTTCTGTTC TTTTCTTTTGTTCTACACAATCATTCCAAAATCTGGGAAACCAATATCCTTGTTCTTTTTTGTTCAATTC TAAATCCCCCTGTCTACATTTGACTTTTAAAATTGTCATTCTACTTCTCTTAAATCCTGTTCATTCAACT CCCTTTCTCTATATTCCTGTTGAGAATTTGAATGCACTTCAGATGTATTATTGAAAAAAGTTTATATCCT ATCCTCAACATTTAAATTATCTTCCTATATATTTGAATTTGAATATCCCTTAAAATTTGTTAAGAGAAAT AACATATTACTAAATATTATAGTATATGAACATTACTTAAATATTCCCTTTTTGCGATTACTCTTGATGT AATACTGCACTTAATACACCCTCAAACACTTCTTATGGTAATCCAAAGAATTTCCGAGATGGATATTCAA AAGATACATCCCTTGTATTATTATTTGATAGAACTATCCTCTGTACACACCCCTCTCTCTCTCTGTCACC CTTTTCTTTGTATAGTCCCATGTGTTGTGTTCCATGCTGTATGTTTTCTTTTGCCTGGCATTATATCACA TCTTATTTACACACAAATTTTGCTCGTATATCATCATCATCATAGCTGTTGAATGTTTAGGAAGGCTTGT CAAACGGGGCATGTAACATCGATGTGACGGTAAAAGGCTGTATGTGTTTGCACCTTTGAAGTTTATATAT ATATATATATAAAAGGTATAAAGCTTGCTTGTCCATTTATATGTTTGCATTCATCAAAGTCTTGGAAACG AAATCCAAACTGCACTCATGCTCGAATACCATTCCTTGAGAGCCTATTTTGCAATCTAAATGTAGCAAGC AATCATGATCGCGTCTGTGTAGTCAAAATGGCTGGCCGAATACTTGCTTCCATGAAAGCTGCATCCAAGC TGAAAATCAAAAGCATTGATGTTTGATTTCGCTTTAGGAATGTTAAGACCAATGAGTGATTATGGAATCG TAAATGTAGGTGACGGCTAGTGGTCAGAGATGAAATGTGCATGTCAATGAGCAAGCTTGCTCCTACTTTG AGCTTTGATTGAAGATAAACTGCTTAGAAATGATAGAAGTAGGAGTACTGGTAGATGGGTATCGATAGAT GCGGTGTTGTGTGGGTTGTTAAACAACTATTCCGTTTCCTTTAGAAATTGAAAGAATTCTCAATGTTGAG TCAGAAACTGGAAATTTAAGTCTCATTGTCGTAAAAGTCCCTTTTCAAGAGAAGAACAGACAGAATTTTT AAATTGAGATATTTGATTACGACATTCTGCCAATGCTGTTATTTGATTTGCCATTTTTTTTTTCAAATTG CCAATCGGGATCTGCATCTCACAATTTGATATTGAATATTATCAACTCACCCCTTATTATCAACAATTAT CTCATAATCTCTGAAATTGCTCTCCTATTTCCAACAATGATAATTGTAAATAAAGTGGTATTGTACATAA ATGATGTATCATTTTTTTATTGTATTGAAACTTTTTTGCGATGGTAATCTTGAATTACATAAACATGTTC ATAGTTCTTGATGGTACAACTCATTACTAATTTTTTGTAAATATATGATAATAGATATCATGTTTGGCAT ATTCTCTGTCATTTTAAAAGTGACAATCTGCCTTGTTTAATCAATCAATGTATACTTATTGCACAGAAGA ACAGACAATCCATATTTTTTATTGTTTTATTTTCCTTATATTACCGCTTGCACTTTACTTACAAGAAAGA TGCACAGAAATTACATCTTCTTTTTATTCACATTGTAATTTGTACTTAATACACTAAAATTTTAAAGATC TTGCCAAACTAAACCAGTCAGAGATTGTTTAAAAATGTACCATATTTTTTTTATTGCTGAATAACCTGAA ATAATGCACCCGCTGCACTGGAGCAATTTTTTGCCTTAAGGTGTCCTAGATGAGACAATTAGAAAAGAAA TAAGGTAAATACAAGTCATGATCTTCCTATGCTAATGCATTTATAGTACATATAATGCTTGAATATAATA ACTGGCTTTATAGATAATCATTTTCAATTCAGGTTAAAGTGATAGTGGTGTGGGTGTGCATGTTGGATCA GTAGACTAAGGCCTTGAATTTGGTAATGAATGATATATATTTAAAAAAAATGTTTGCTTAAAGCTTGCAG CTTATGCTTGAATGCATACAAAGTAGTTCTAAGCTTTGTTTTATGAAATGACTTTTGCTTTGCTTTAAAA AACCCCAAAATCCAAAAGGTGTTCAATGAAATGAGCTTTTCAAATAAAATATAGCTTTCATAACCCAACT TTATTTTGTGCTTGAAGTTCATTTTCCAAATTGCAATGGAGGCATATCCCCCTTTTGTCCCCCAAAGCAG ACAAAGTCTGGTCTCATTTTTTTCCTTTTGAATTTTCTTTTTACAGTTCCTCTAACATTCCAGGAAGTCT TGATTCATATGTGTTTTATTATTTCCTCTACAGAAAACATTAATTTGCAATGAACAATATTCCCCCATTT ACCAAATCCTATCTGATATGGAAGAAGATTGCCAGTGATCCCTTTAATATAATTTAAAACAATTTTTAAT TCAATAGGTTTTTTTTTTCGTTTTAATGCAAACACAAATTTTAACATTTGTCTGGTATCGGACAGAAGTT CATTTTAATATTTCATTCATAATGATAATAATAATGAATTGCATTTGTTTTTTTATTTCTTATACATTTC ACCCATTTTAACAATTTATCCAAGAAAAGCCCTTGTCAATCAGTGGCTCTTTTTGTCAACCTTAGCTCAA TCCAATAGAACTACTTATGTTATTGTTATTATTTTTATGGAAGCAAAATGTACATACATAATGGTCATGT ATGTCATTTCTTGATGCACTGTTCTACGCAAAGGTTTTTTGTGAAAAACCAAACTTGCTCTAGTCATGGT GCAGAGCATAATGTATTCATAGATAAATGTGCCTGTTGATTAAATTGGGCACAATTGCTGATATACGGTA ACACTTTGGATATATGTAGCATATAGGACTGGAGGTCCGTATGGCAATAGAGAAGTTTATTAGCATATAA TATGTAGCTTTGAAAGTCTAGTACGCAATGCTTGTGTGTATATCAGAGATAAATCATACCAAAGTACTCA GAAATTTCAAAGTGATGATGAAAACAAAAAAATGTTTGAAAAAAAATAGGAAAACCCACAAAAAAAGTAT ATAAAAAAATGTTCAAACTGAAATTATCAGTGTCTGAAATGTTAGCTGTTAAATGGATGTTTTATCCTAC GAATAGATTTGTGATTCTATATTTTAAGTACTGTTTATAAGAAAACATGGTTGACTTTTTATATTCTTTT AGTGAACAACAAATTTTGAGTGATTTTTTTTTAGATGATTTTGTTGTCATTGAAATTGTATTTCCACGGA TTCATTTCTTTTTCTCCAAAAATATTGTACATTTTGTGAGATGGTATTTTTTAGTTTCCTTTTTCTTTTG GTCATTTCTTCTTTTTATTGGAAAAGTTTTGATTTTTGTGTGTAAGTTTTTTATTTTTGACATTTCCCCT TAGTGTGTATAGAAAATATTGTGATTTTTTTTCCTATATGAAATTCAATATAGCTCATACCTTTTCAAAA GTTTTGTTGAATTCCGACAAGTCGATGTACATTTAATAGGAATTTTACATGTAAGTGATTGGCCAATAGG ATGCCATGTTATATAGTGTCTTGGGGTTTGAGGAGATGATAATATATGATCCATATTATGCACTTGCACT ATGTAGAGAAAATGGGAAGAGAATGAAGGAAGTGGGAGGTAGAATTGATGCAAAAAAAAGAAGAAATAAA TGCATTTAAAGTGTTCAATATTTGTGGAGGTATTTTCATACACTGCTGTTTGGGAAGTCTGTTTAAAGAT GACAGAAATTTGAAGCTTTTCCTCAAACCATGGTCTAATTCAAAAGTAAAGGAAAAGAAGATGAAAAGAG AAAGTAAACTATACCCATAATGCATTGTTCTATGCCACATATTTATGTATACAATGAAATTAAATAGAAG TGTGATTTGATGTTATCGTCTTCACCCCAAGATGGCTATTGAACATAGCAGAGATGGTGCACTTTGGACT CCATTTATCACCTTGTTTACAGGAAGTGACTTTTGACATGAGGTCAGAGGTTAAAAAGGGTCAAACCTTT GTGAAAAGCACTTGGTCTTTATTTTTTTCCATTCTGTAGCGAGAACACACTCTTATTATCCTGTTTATGT AGTCTATTAAATGGTAAATCTATTGTATGATAATAAGAAACATTGTTATTTGTATCATGATGGTAGTTAT CCTTATGGTAAGTTGTATCTTTTAAAGAAGTTTTATGAATACTAGATATGATGTCTTTAATGTGTGATGT TTACATTGTATATGAAATCTGAAAAGTTTTTTGATTCATTATGTACAAGTCTCAGAGAGACTAAAAAAAA TCAATTGTGAATACAGGAAAATACTATTCCACGTAAAGAACCAAATTTTAGCGATGTTTTAGGAAAGTAG GAGTTACAAAGAGTCTGATCGATTCTCTCCCTCATTGCGTCTCAAACTCTGATCATCGCTCTGATCATCG CTGAGAGGGAATGGGGGAGAGGAATGGATAGTTTCCATTTTCAAGACCAACTTTCTTGTAGTACATCATT TTATATGAGATGAAGAGGAAGGAGCAAACCTCAGTATTGTATGCTAGCGCATGGGTCCAAGACCAGACAT TTAAAAAAAAAAAAGAAGAAAACTTAGGATGCAAACAAAAAAAAATCAGCGCAAGCATGCGGTAATAATG GGCTTCTTTTGAATTACCTCTTGGAAATGGAAATGAATTAAAACAAAACTTGCTGGAAAGCCGATAAAGT GGTAGAAGGGTCTTCAATATCCCATTCAATCATGAACCTGAATGTTTTTTAAAGAGGAATGCCATTCGCG CGATCGAATAAGATCACATCTTGGCTATGGTGACCCTCTATATCTTGTGTCTGTCGTGATGTCCATGTTG TGTGTTGACACAAGTGTGGCACATTTTTTGTAACGTCCTGTAGTATCTGCTGCTGCTGCTATTGCTGCTT TTGCCTGAATCGTCAAAGAACCCCTTTTACAATGAAAACAGGTTTGGTTAACCATAATAGGGAATTATGG ATAGGTTGGTAGTGTACTTCATTTCATGTTGGTAATTTAAAAGTGTAATACATGTGGGATTCCGGATAGG AAAACTTGATGATGTCAAAGTGACTTTAAGAGAAATTAATCATAATTCTACTTTTGAAAAAAATATTAAT CATGAAATTATTAAAGGTTATTGATCAACTGTGCCAAAAGTCTTGAAGTAATTTTCTTGATTGACATCTG AAATTTTGCGAGCAGGAAGCAGATTGTTATATTTCCCAAGGAAACGAGAGGAAGAAACATCTAGGAAGAA GAACAGTACTATGGAACGGTTGTCATGGAAACTTAACAATATTGAAATATAGTCGTAAATCACAACAAGC ATTTATAAACATCACAGAATGAGCTTTGATTCTGGTTAATTATAGGTAAATGAGTTGGTATTCAAATGAC ACCAATAAAGGTGGGGGATAATTTTCCAGAGCAAAAAATACCACATTTTGAGAGTCAAATGCCATAATAA TAAATATAATAATGATTGTGGGCATTAACGGAAAGACAAGACAAACAGAGATTTTCAAACTGTTACAATC GGCATTGATTATTGTGAAATTTTGGCAAATTAACAGTCCTTTAAAAATAAATGTTCCCATAGAATATATA AATCAGTGATTGTGTCACCGATGTAACAGCACTAGTGGTAGTTTAGTGTATAGTTCTCACTTACTTACAT ATACGAGAACTCTGAATTTTGTACATGTAGTAGTATCATTATTAGTAACTCTTCAGTCGGTTTGAAATAC TGTTGAAATACTTTATTTTTCAAATTTTAATAACTTGATTATTGACTTGTTTAAATCTTGTACTTAATCA AAACTGATGTAATTCAATATTCTGATTTTTTACCCTAATCTGTATAGCGAGATTCAATTTTTGTATCATA AAATTCATAAGTCATGAACTGGATTTAAATTTCGGAGGATATATTTTTATGTGAGATATGACATTTTTTT CCTTTTGAATTTTTTAATTATAAGAATCATGGTGTTAATTGTATATTGATATGATTGTACTTAATATAAT TCTTAAGATTATGTAACCTTAGCTGAATGTCAGTGTGGTTTTGTTGAAATCTCCTCATTTTGATACTATA AAATATCTCTCTCATGTTCAATAAGAATATCAGTTTAGAAACTTATATCACATAAGAGCAGGAAGATTCA ATGGTTGTCATGGATATGAACCATTTTGGCAATATAATAAGAACACATAAGCTCAATGAAATTTACTTAC CGATTCAACATAATCAACTCGGAATTTATTAATTTACTTGTCATTTTACTACATGGAAATCCTAGGGGAA TTTTCAATTGCAATGTAGAAACTGCTAGTTTGGAACATCAATTTTTAATTGTAAGTAGCGTTACATTTTT TTGTAGAAAAATAGTGAATTCCAAATTATTCTTCATGGGTACAGAGTGAAGAAGAAATATTGTTTGATAT TTACCCAGTTTGTAGTATTTGAAGTACTTGTCTTGATCCACTACAGGAATATGTAGCTCAAAGGTTTAAT ACTTTTTTTGTAAGCACGAAACTGTCTGGTGAAAACACTCACAGCTCATGCTCAGACGGGTCAACACACA ATCGCTTTTGCTTTCTGATTGCATATCTGCGCTGCTTTTTCCTTCTATCAAATGTAAATAATTGTGAAAT ATGTTCAAAACAATTTCACATGCGGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds