Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041626612.1 PREDICTED: Lytechinus variegatus muscleblind-like protein 3 (LOC121429542), transcript variant X10, mRNA TTCCGCGAATACACCCACCCCATGCAGGGTCTCTGGTGACTAGACTATGAACCCCAATGAGTGACTGGTT CCCAAGTATAGCATTGCATACATGAATGATCTGAAGTATGTGTGCAGTGTGTCTGCACATTGGAGTCATC ACCACCACCATACCTCTCGCTCTCGTTCGTTCCGTGTACAGCCAAGTCAAAGAGCCAGTTCACCCAATCA GCTTTTTTATATCAGCCTGCAGGAATAGCACACCGGGTCGCTGTACAAGGGAGAACTGCAAGTACTTGCA CCCGCCCCCACACCTCAAGACCCAGCTGGAGATCAACGGGCGTAATACGCTCGCCACCCAGAAGATGCTG CAGAACCTCCAGAACCAGCAGCTCCAGCAAGTAGTCGGCATGACCAACCTCCAGCTCCAACCCTCGCCCA GCTCCACCACCCTTCTGACGGGTAGCCAAGGTCTTCAGGCAGGCCCTGGGAGTAACCATCAGCTTGTGAT CCCAACGTCCTCTCCATACCCGGGAAAGGATTCTACCGCTGCCTCGGTACCTGCATCATCTTCCCTTTAC CACCAGCATGCGCCCCCTCAAATACAGTACAACGGCCTGCAAATTGTGCCCCAATCGCCCTACAGTATAC CTGCCAGCGGGCAGGGTCAAGCCCAAGTGCATACGAGCCAGGCTGCTACAGACATCAACGCAATGTACAG TCCTTTTTACTTGCCCGTTGCAGTGTCCATGGGACCAACGATGTCAGTGGGGACCCACTCCTCCACCAAC CCCTATGGGTCGTACTTCATGCCCTTCCCCAGCCCCAATATAGGACAACTCACACCCAGCCAGGCATCCT CTATGGGGCTAGTACCAGAGATACCGGGGCTACCAGCCCAGATGATACCCAGTCACACCAGCCAAGGTTT GCCCATCATACCGTCGATGAAGAAGAATGACAAGCTGGAGACTCTATCCGGGCTGGCTCCACCTCCTCCA AAGAAGATAACTGCCGGTAGCTTAGGTCACCAAGGGACGGGGCACATGATGAATATCTTCTCGCCTTCAC AGTTCCCATACCACCCCCAGCTTGGACCAGCTATGATGACATCACATCAACCCACACCAGTAGTGCCAAC GCCATTCCCAGTCATGCCTTCCATGGCTCCGCCAGGCCCCGGACAAAGTATCCCGCTCTTCGCTCCCATA ATGCCAACGCAGGTACATCCCACCAGACATCCACAATCTAATGAGACCATTCCAGTCTGCAGAGACTTCA AGTCAGGTAGCTGCAAAAGACCAAGTTGCAAGTATGCTCACGTTACAGAAGATTATATAGAAGTAGTGGA CGGGAAGGTCACGATGTGCCGTGATGCGGTACGGGGGAAATGCCTCCGCGCCACCTGCAAGTACTATCAC GCTCCTACTCATCCTCCTGCTACTACTACTACTACTGCTACTACGCACGTTACCATGGCAACCTCTTCCT CTGCATCTTCTGCTTGCTCCTCCTCCTCCTCATCAGCAAACACCTACATGGCTGGTAGCACGGCAGCCCC TCCTGGTCCCCACTACACGGCTTCCAGCACGCCCACGGGCACCATCAACAGCACAGCCGCCGCCGCTACA ACAAATGCTAGTGCTCCTGCTGCTGCCGCTACCGCTGCCGCCAATGTCTTGCCGCCACAACCACTTCAGC CGCAACCTCTCCCTTTCTCAGCGGCTTCGGCTGCGGCGGCTGCTGCAGCTGCCGCGGCCAACGCCGCAAC CAACCCATACCTCCACCACCACCACCATCATCACCAACATCCCGCATCCACAGTCATGCCCATAGCTTTA AGCAATGGCTACCCGGCACAAGTCTTGCCTTAAAAAGAAAAAAAGACATAAGATCAAAAACGTAGATGAA GTAGACTCAGATAATGAGTACAAAAGCTGTTGAGCATGATCAAAATTAGACAATCAATTCCTTTTCTGTT CTTTTCTTTTGTTCTACACAATCATTCCAAAATCTGGGAAACCAATATCCTTGTTCTTTTTTGTTCAATT CTAAATCCCCCTGTCTACATTTGACTTTTAAAATTGTCATTCTACTTCTCTTAAATCCTGTTCATTCAAC TCCCTTTCTCTATATTCCTGTTGAGAATTTGAATGCACTTCAGATGTATTATTGAAAAAAGTTTATATCC TATCCTCAACATTTAAATTATCTTCCTATATATTTGAATTTGAATATCCCTTAAAATTTGTTAAGAGAAA TAACATATTACTAAATATTATAGTATATGAACATTACTTAAATATTCCCTTTTTGCGATTACTCTTGATG TAATACTGCACTTAATACACCCTCAAACACTTCTTATGGTAATCCAAAGAATTTCCGAGATGGATATTCA AAAGATACATCCCTTGTATTATTATTTGATAGAACTATCCTCTGTACACACCCCTCTCTCTCTCTGTCAC CCTTTTCTTTGTATAGTCCCATGTGTTGTGTTCCATGCTGTATGTTTTCTTTTGCCTGGCATTATATCAC ATCTTATTTACACACAAATTTTGCTCGTATATCATCATCATCATAGCTGTTGAATGTTTAGGAAGGCTTG TCAAACGGGGCATGTAACATCGATGTGACGGTAAAAGGCTGTATGTGTTTGCACCTTTGAAGTTTATATA TATATATATATAAAAGGTATAAAGCTTGCTTGTCCATTTATATGTTTGCATTCATCAAAGTCTTGGAAAC GAAATCCAAACTGCACTCATGCTCGAATACCATTCCTTGAGAGCCTATTTTGCAATCTAAATGTAGCAAG CAATCATGATCGCGTCTGTGTAGTCAAAATGGCTGGCCGAATACTTGCTTCCATGAAAGCTGCATCCAAG CTGAAAATCAAAAGCATTGATGTTTGATTTCGCTTTAGGAATGTTAAGACCAATGAGTGATTATGGAATC GTAAATGTAGGTGACGGCTAGTGGTCAGAGATGAAATGTGCATGTCAATGAGCAAGCTTGCTCCTACTTT GAGCTTTGATTGAAGATAAACTGCTTAGAAATGATAGAAGTAGGAGTACTGGTAGATGGGTATCGATAGA TGCGGTGTTGTGTGGGTTGTTAAACAACTATTCCGTTTCCTTTAGAAATTGAAAGAATTCTCAATGTTGA GTCAGAAACTGGAAATTTAAGTCTCATTGTCGTAAAAGTCCCTTTTCAAGAGAAGAACAGACAGAATTTT TAAATTGAGATATTTGATTACGACATTCTGCCAATGCTGTTATTTGATTTGCCATTTTTTTTTTCAAATT GCCAATCGGGATCTGCATCTCACAATTTGATATTGAATATTATCAACTCACCCCTTATTATCAACAATTA TCTCATAATCTCTGAAATTGCTCTCCTATTTCCAACAATGATAATTGTAAATAAAGTGGTATTGTACATA AATGATGTATCATTTTTTTATTGTATTGAAACTTTTTTGCGATGGTAATCTTGAATTACATAAACATGTT CATAGTTCTTGATGGTACAACTCATTACTAATTTTTTGTAAATATATGATAATAGATATCATGTTTGGCA TATTCTCTGTCATTTTAAAAGTGACAATCTGCCTTGTTTAATCAATCAATGTATACTTATTGCACAGAAG AACAGACAATCCATATTTTTTATTGTTTTATTTTCCTTATATTACCGCTTGCACTTTACTTACAAGAAAG ATGCACAGAAATTACATCTTCTTTTTATTCACATTGTAATTTGTACTTAATACACTAAAATTTTAAAGAT CTTGCCAAACTAAACCAGTCAGAGATTGTTTAAAAATGTACCATATTTTTTTTATTGCTGAATAACCTGA AATAATGCACCCGCTGCACTGGAGCAATTTTTTGCCTTAAGGTGTCCTAGATGAGACAATTAGAAAAGAA ATAAGGTAAATACAAGTCATGATCTTCCTATGCTAATGCATTTATAGTACATATAATGCTTGAATATAAT AACTGGCTTTATAGATAATCATTTTCAATTCAGGTTAAAGTGATAGTGGTGTGGGTGTGCATGTTGGATC AGTAGACTAAGGCCTTGAATTTGGTAATGAATGATATATATTTAAAAAAAATGTTTGCTTAAAGCTTGCA GCTTATGCTTGAATGCATACAAAGTAGTTCTAAGCTTTGTTTTATGAAATGACTTTTGCTTTGCTTTAAA AAACCCCAAAATCCAAAAGGTGTTCAATGAAATGAGCTTTTCAAATAAAATATAGCTTTCATAACCCAAC TTTATTTTGTGCTTGAAGTTCATTTTCCAAATTGCAATGGAGGCATATCCCCCTTTTGTCCCCCAAAGCA GACAAAGTCTGGTCTCATTTTTTTCCTTTTGAATTTTCTTTTTACAGTTCCTCTAACATTCCAGGAAGTC TTGATTCATATGTGTTTTATTATTTCCTCTACAGAAAACATTAATTTGCAATGAACAATATTCCCCCATT TACCAAATCCTATCTGATATGGAAGAAGATTGCCAGTGATCCCTTTAATATAATTTAAAACAATTTTTAA TTCAATAGGTTTTTTTTTTCGTTTTAATGCAAACACAAATTTTAACATTTGTCTGGTATCGGACAGAAGT TCATTTTAATATTTCATTCATAATGATAATAATAATGAATTGCATTTGTTTTTTTATTTCTTATACATTT CACCCATTTTAACAATTTATCCAAGAAAAGCCCTTGTCAATCAGTGGCTCTTTTTGTCAACCTTAGCTCA ATCCAATAGAACTACTTATGTTATTGTTATTATTTTTATGGAAGCAAAATGTACATACATAATGGTCATG TATGTCATTTCTTGATGCACTGTTCTACGCAAAGGTTTTTTGTGAAAAACCAAACTTGCTCTAGTCATGG TGCAGAGCATAATGTATTCATAGATAAATGTGCCTGTTGATTAAATTGGGCACAATTGCTGATATACGGT AACACTTTGGATATATGTAGCATATAGGACTGGAGGTCCGTATGGCAATAGAGAAGTTTATTAGCATATA ATATGTAGCTTTGAAAGTCTAGTACGCAATGCTTGTGTGTATATCAGAGATAAATCATACCAAAGTACTC AGAAATTTCAAAGTGATGATGAAAACAAAAAAATGTTTGAAAAAAAATAGGAAAACCCACAAAAAAAGTA TATAAAAAAATGTTCAAACTGAAATTATCAGTGTCTGAAATGTTAGCTGTTAAATGGATGTTTTATCCTA CGAATAGATTTGTGATTCTATATTTTAAGTACTGTTTATAAGAAAACATGGTTGACTTTTTATATTCTTT TAGTGAACAACAAATTTTGAGTGATTTTTTTTTAGATGATTTTGTTGTCATTGAAATTGTATTTCCACGG ATTCATTTCTTTTTCTCCAAAAATATTGTACATTTTGTGAGATGGTATTTTTTAGTTTCCTTTTTCTTTT GGTCATTTCTTCTTTTTATTGGAAAAGTTTTGATTTTTGTGTGTAAGTTTTTTATTTTTGACATTTCCCC TTAGTGTGTATAGAAAATATTGTGATTTTTTTTCCTATATGAAATTCAATATAGCTCATACCTTTTCAAA AGTTTTGTTGAATTCCGACAAGTCGATGTACATTTAATAGGAATTTTACATGTAAGTGATTGGCCAATAG GATGCCATGTTATATAGTGTCTTGGGGTTTGAGGAGATGATAATATATGATCCATATTATGCACTTGCAC TATGTAGAGAAAATGGGAAGAGAATGAAGGAAGTGGGAGGTAGAATTGATGCAAAAAAAAGAAGAAATAA ATGCATTTAAAGTGTTCAATATTTGTGGAGGTATTTTCATACACTGCTGTTTGGGAAGTCTGTTTAAAGA TGACAGAAATTTGAAGCTTTTCCTCAAACCATGGTCTAATTCAAAAGTAAAGGAAAAGAAGATGAAAAGA GAAAGTAAACTATACCCATAATGCATTGTTCTATGCCACATATTTATGTATACAATGAAATTAAATAGAA GTGTGATTTGATGTTATCGTCTTCACCCCAAGATGGCTATTGAACATAGCAGAGATGGTGCACTTTGGAC TCCATTTATCACCTTGTTTACAGGAAGTGACTTTTGACATGAGGTCAGAGGTTAAAAAGGGTCAAACCTT TGTGAAAAGCACTTGGTCTTTATTTTTTTCCATTCTGTAGCGAGAACACACTCTTATTATCCTGTTTATG TAGTCTATTAAATGGTAAATCTATTGTATGATAATAAGAAACATTGTTATTTGTATCATGATGGTAGTTA TCCTTATGGTAAGTTGTATCTTTTAAAGAAGTTTTATGAATACTAGATATGATGTCTTTAATGTGTGATG TTTACATTGTATATGAAATCTGAAAAGTTTTTTGATTCATTATGTACAAGTCTCAGAGAGACTAAAAAAA ATCAATTGTGAATACAGGAAAATACTATTCCACGTAAAGAACCAAATTTTAGCGATGTTTTAGGAAAGTA GGAGTTACAAAGAGTCTGATCGATTCTCTCCCTCATTGCGTCTCAAACTCTGATCATCGCTCTGATCATC GCTGAGAGGGAATGGGGGAGAGGAATGGATAGTTTCCATTTTCAAGACCAACTTTCTTGTAGTACATCAT TTTATATGAGATGAAGAGGAAGGAGCAAACCTCAGTATTGTATGCTAGCGCATGGGTCCAAGACCAGACA TTTAAAAAAAAAAAAGAAGAAAACTTAGGATGCAAACAAAAAAAAATCAGCGCAAGCATGCGGTAATAAT GGGCTTCTTTTGAATTACCTCTTGGAAATGGAAATGAATTAAAACAAAACTTGCTGGAAAGCCGATAAAG TGGTAGAAGGGTCTTCAATATCCCATTCAATCATGAACCTGAATGTTTTTTAAAGAGGAATGCCATTCGC GCGATCGAATAAGATCACATCTTGGCTATGGTGACCCTCTATATCTTGTGTCTGTCGTGATGTCCATGTT GTGTGTTGACACAAGTGTGGCACATTTTTTGTAACGTCCTGTAGTATCTGCTGCTGCTGCTATTGCTGCT TTTGCCTGAATCGTCAAAGAACCCCTTTTACAATGAAAACAGGTTTGGTTAACCATAATAGGGAATTATG GATAGGTTGGTAGTGTACTTCATTTCATGTTGGTAATTTAAAAGTGTAATACATGTGGGATTCCGGATAG GAAAACTTGATGATGTCAAAGTGACTTTAAGAGAAATTAATCATAATTCTACTTTTGAAAAAAATATTAA TCATGAAATTATTAAAGGTTATTGATCAACTGTGCCAAAAGTCTTGAAGTAATTTTCTTGATTGACATCT GAAATTTTGCGAGCAGGAAGCAGATTGTTATATTTCCCAAGGAAACGAGAGGAAGAAACATCTAGGAAGA AGAACAGTACTATGGAACGGTTGTCATGGAAACTTAACAATATTGAAATATAGTCGTAAATCACAACAAG CATTTATAAACATCACAGAATGAGCTTTGATTCTGGTTAATTATAGGTAAATGAGTTGGTATTCAAATGA CACCAATAAAGGTGGGGGATAATTTTCCAGAGCAAAAAATACCACATTTTGAGAGTCAAATGCCATAATA ATAAATATAATAATGATTGTGGGCATTAACGGAAAGACAAGACAAACAGAGATTTTCAAACTGTTACAAT CGGCATTGATTATTGTGAAATTTTGGCAAATTAACAGTCCTTTAAAAATAAATGTTCCCATAGAATATAT AAATCAGTGATTGTGTCACCGATGTAACAGCACTAGTGGTAGTTTAGTGTATAGTTCTCACTTACTTACA TATACGAGAACTCTGAATTTTGTACATGTAGTAGTATCATTATTAGTAACTCTTCAGTCGGTTTGAAATA CTGTTGAAATACTTTATTTTTCAAATTTTAATAACTTGATTATTGACTTGTTTAAATCTTGTACTTAATC AAAACTGATGTAATTCAATATTCTGATTTTTTACCCTAATCTGTATAGCGAGATTCAATTTTTGTATCAT AAAATTCATAAGTCATGAACTGGATTTAAATTTCGGAGGATATATTTTTATGTGAGATATGACATTTTTT TCCTTTTGAATTTTTTAATTATAAGAATCATGGTGTTAATTGTATATTGATATGATTGTACTTAATATAA TTCTTAAGATTATGTAACCTTAGCTGAATGTCAGTGTGGTTTTGTTGAAATCTCCTCATTTTGATACTAT AAAATATCTCTCTCATGTTCAATAAGAATATCAGTTTAGAAACTTATATCACATAAGAGCAGGAAGATTC AATGGTTGTCATGGATATGAACCATTTTGGCAATATAATAAGAACACATAAGCTCAATGAAATTTACTTA CCGATTCAACATAATCAACTCGGAATTTATTAATTTACTTGTCATTTTACTACATGGAAATCCTAGGGGA ATTTTCAATTGCAATGTAGAAACTGCTAGTTTGGAACATCAATTTTTAATTGTAAGTAGCGTTACATTTT TTTGTAGAAAAATAGTGAATTCCAAATTATTCTTCATGGGTACAGAGTGAAGAAGAAATATTGTTTGATA TTTACCCAGTTTGTAGTATTTGAAGTACTTGTCTTGATCCACTACAGGAATATGTAGCTCAAAGGTTTAA TACTTTTTTTGTAAGCACGAAACTGTCTGGTGAAAACACTCACAGCTCATGCTCAGACGGGTCAACACAC AATCGCTTTTGCTTTCTGATTGCATATCTGCGCTGCTTTTTCCTTCTATCAAATGTAAATAATTGTGAAA TATGTTCAAAACAATTTCACATGCGGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds