Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038193946.1 PREDICTED: Patiria miniata muscleblind-like protein 1 (LOC119723351), transcript variant X6, mRNA CACAATTGTTATACATGTACATGTACAACAGGTTGGGAATATCTGACGTTGGCTTATTATCGGAGCGATA AGTCAGTAGTCAGTGTGATTTCTTTGTTTCTTTGGAAATTTGGTGTCTTCAAGATGTCTGGATTACCCTC CATGTCTTCAAGGGTGGCCTATAATTTTCCCATATCGCTGTGTCCCGAGCTCTCCCAAAATGTTCAGGGC CGCTGCACGCGTGAAGACTGTAAGTACCTACACCCGCCGCCCCACTTGAAGACCCAACTGGAGATCAGCG GCAAGAACAGCATCGCAGCCCAGAAGATGCTGCAGAATTTGCACAACCACCAGCTGCAGTTGCAGGCCGC TGCCGCCGCCAGCATGCAGCTGCACCAGCCTGGCGCCACCATCTTGCCTACGCACCACCAGGCGCTCAAC TCACTGGAGTTGGTTGGCTGTCCGTCATACCCGTACGACATGGGACGATACAACACCAGCTGCACTAGAT GCTTACAGACAGAGGCGCCGTCCCCAGGATTGAGTACCTCTCCCGCCCTCAGTACGTCACCCGCAGTGTC CGAATCGTCCTTCTACAGTACCTACTTGTACCCCATGCCTGTTTCCATGCCCCCAGCAAACCAAGTGCCC AGTCATCTCAACTCCATGTACTCCCAGTACCTACCGGCGCAGCACATTGCACCGACCAATCAGCTTCAAG ATTTCCCCACGCCAGGCCAAATATTTACCCCCAACGGAGCCGTCATACCCTACCTACCACAGCGCCCCAA GAACGACAAGTTGGAAGTCTGTCGTGAGTTTCAGCGGGGCAACTGCTCGCGGGCAGAGTGCAAATTTGCT CACCCTGCCGAGGGGGCGGCCATAGACCAGCTCGACAACACCGTCACGGTCTGTATGGATTACATCAAGG GGCGGTGTAGTCGGGACAAATGCAAATATTTCCACCCGCCCGCGCACCTCCAGACCAAAATTAAGGCCGC CCAACACACTAACAGCCAAGCTAGCGTTGTGCTTCCGACCACGCCTGAAACAATCAGCAAGAAACGAGCC CGGGAGCCTGCCGATGACATCATTCTGAATCCCGCATTGCCGGGGCTTATTCCGCCGCCCAAGAAAGGCG TGGGGGCCATCTCACATTCACATCACATAGCCGCACAGAGCCTGATCCAGCATCACCCGGCTATGTACCA ACCGGCCCTGACCACGTCCATGCAGATGAATGGCCAGCCCTCTCATTACCTACCACCGCCAATTCCCATG ATGCCAACAGTGCCTCCCGGTGCCGCCGCTACCATGCCTTCTTTCTACACACACCAAGTTATGCCCCAGC AGCAGTCGGCTGATACGATACCTGTGTGTCGCGACTTCAAGTCGGGTAGCTGCAAGAGGCCCAACTGCAG ATATGCACATGTGATGGAAGACCAAGTAGAGATCATTGAGGGCAAAGTGACGCTGTGTCGTGATGCCGTC AAGGGCAAATGTGCACGAGCCAATTGCAAATACTACCACAACTCCTCCAATGCCTCTGCCTCCTCCTCTG CAGTCAATGCTAGTGTCACCGTTGCCACCACTATGGTTGCTTCATGCTCTACTCCTCTGGCTGTCGCTAC CATGGCTGCTCAATAAACAAAAAAGCAAGGGAGACATATTCACACAAAAATCGGCTGATCTCTCTTATGC CTGCCTGCCTGCCTGTTTTGCCTGCACAACCCCCTCCCTTCTTTTTTTTTTGCTGGCGCTTTTGATAAAA ACCCCTTTTATCACCAAGCTCGGAAACCAGCAAAAAAAAAAAACAGTCGCATTTGGTTTTGTTTTCTCCA CTTTTGTATCTGCTTACATCCCAGTGTCTGAATTCATAGAGCATTTTGGGACCGTTGCTATTTCTCATGT TGGTATCATTTAATTTCTGACTATAGAAAAGAGACTTTATTTCTCCGTTTTTGACGCTGGGAGAGATGTA AGATAAGCTTGCCCGCACATCATGAAATCACGACATTCATATGCACACACACAAGTGTTTAATTGGAGGG GGTTAAATTGTGTACAGGCCTGCATGAGAATGACGTTGTGCATTTAGATGTAGAATCACAACAAAAATAC CCACAAGATTCAGATGGCAACCCTCAGTTCTTTCTACCTTTTTTTTTCCTAAATAACTTTGGGAATATAT TGAATTGACTTTTTTTACCTTGAAAAAAACCATTGTGTGGTAAAATGTGCCAAAAAAGAGACAATTTTTA AGATTATGAAGCATGTAAATGTCGGACTGTTTCTTAGTGTATATAAAAAGAAAGTTAGTTGACAAAAATC ACCAATTTAGATTATTTTTTTTTATTGTGTGTATCCTTTGATAAAATCCCGCACTTGCACGAGAAATATT GGGGGGGGGGCGTGGAAATCTGTGGAAATAACTACAAGAAATATTTTTCTCGACGGTGCTTTCTTTTTTT ACTTCAACTGAAATAAAACAACACTTTTGTACTCAATTTGATGTGAAACCCTCTACTTGCGTTTGTATAG TAATTCGAGTTCATAATTTTTCACAAGTTGTTAATATATACTTTTGAAAGAACACCTTTTATATTTGGGG TCATGCCATTGGAAGCCTGTGGATATCTTTGTGGTGATATATTTTAGCCCAGATCAGCTTTTTTTTTTTC GGTGATAGAAGCAAAAGGGTGGACGTGCAGGCCAATGCATTGGATTGACAACGTCTGTAAATCAAAAACA TCCAGGAGAAATCACAAAAGGAAACAGAGAAAAGGTACAGAGAGTTGTAAAAAAAAAAAACACTTCAAAA TCCTTTTGGCAAACGGAGTAAGGGCCTGCTCATGTCATATTTTGGGACGAGTTCCGGACAAGTTATAAAC ATTGTATCGGGTGTAAGTTGCAGGATTCCTATCAACTTTCCTGCAATGAAGTTATCAGTATGAGTCCAGC GGTTGCCAATGAAAGTTTTCCCGGAACATGTCCGGGACAAATGCGGCGCTTCTCTCGGACAAAGTGAATG ATTCTACCTGCAACTTGTCGGTAACTCATCCCAGATATGAATAGAGACGGGCCCTAAAATGGTTACAGCT TCAACCAATCTTCACTGCATGGCTGCAAATGATCCACCATATTTTTTTTCAACTGTCATCGGTGCAAACT AATGATGCTTTCTGGGCTGTGTTGGTTTTTTGGATTTGTTTTAGCTTCTTCTTGGTAGTCAATTTTTCCC ACCATCTTTGTATTAAAGGAATGCCGAGTAGTGGATGTGTTGATTTGTATATTCCATCACCGCTGCTGGC TATCTGAATGATCTTTACGCTCATTTTTTGCTTGAAAGCATGCCATAATGCCTTATAGCTCTGAAATGTT ATTTGTTTGTAGTTTGAGTCGTGTCACATCACATGGAAGCATTCGCTAGAGGACGATTGACCATTAAATG TGTTTTTTTTCTTAAGGTGAGCAAGTCTTTTGACGTTTCTCAGTTTAAATTATAAATGAAGGAGGCATAA GTTGAGGAACTTTGGTGTTTCTCGGATGTAAAACTTACCAGTTTTGGCGTGACATAAATGGCGCCCTCAA GCGTTCTGTCGTACCATGTGACACGCTCTGTAACCCATGTTTACAAGCTTGCTGCTTTGGGGGTACATGT ATAATAATCTCAGCACATGAAATTCAAGCGAAGACCTTACATGGAACGCAAATTTCGATATTTTTTTTCT TCAAAAATCCTTCAGTTGTTTTTCTGAAGGAAAGGAGATAAACAGTTGTTTTCTTGGTTGCTTTTTTTTT TAATGGTTTTCATTTTTCACAATTTTTATTTTATTTTGCTCTTTGTGTTCAAAAACACTGTGCCAAATGC TTTTCCTTTTATTTTATTTTACTACCTGGTAGTTCGTTCTGACTTTATAATTCGGAGAAGCTTAAGAGAA AAAAAAGCTGAATAGACAAGGGAAAATTGTCCCCCAAAAATAAGAAAATGAAAGGGGCTAAACTTGGCTT TTACAAGGAGAAAAGTCCCTGTCATCTATTAATGGGAGAGAAATTGAAATATTGCAACTCGTTAAAAGAT TCGCTGTTTGAACAGATCTGGTGGAAGCTTTCTAAGGTTACTGCTTTAGAGCACGTCATGCTGAAATGCT TGACAAAAAAAAAAAAAAAAGATTATAAATTTTAAGGATTAAGAAGGAGCTTAGCTCCCTAAAAAAGGAA AACTTTACTCTATCTGTCGTTTAAAATTGAGATGCATATATCCGTCTCTCATTTTAGTGATTTGTAGTTG TATAAAAAACTGTATGACATGTCGAGTCATACTTATATAATGTACTTAAACAAGTTTTTTTGTATATAAC GTGTGAGGTTACAAAATACATTTAGACAATTATCTTTTTTGGGTTATTGTCGGTCTTCTTGGAGTAAAAA TAAAATATCTTAAATCAATGGTATTAATATTCAGTATCAACGTAGTGTCTTTTACAAATCTTGGTGCCGT CTTCTTTTTGTTTTTTAAAGGAAGAAAACAAGTGTGTGCCATTGTTTATTCAATTTTAGACAATAATTTG TAAAACATCTGACAAAAAAAATAATTAGGTGTGGTTAATTCTTATGATGTTATGATAACAATAATTAAAA AAGAAAATACAGGGTGCCGACAATCCTAATGTAACTGGACTTTTTTGCCAAAGTATTGTAAGATTATACG AAAAAAACAATAGCAAGATGTGTTTCAAGATTACTTACAGAAGTGTGTGTGTCTTTTTTTGTAAAAAAAG AAAAGAGAAAACCACACACTATAAACCAACAGTGTGTTAGATACTAGCACATTAGTTACCTGTTGGTTGT CATGGTGATGTAAAAACGAAATACCAGGGTTTCCGCGTTTTCCTTTTTTGTGTGAAAAACTCGGACATTT CACCAAAGATATACACTGGATTTTTTGTAATGATAATCCATGTATTGCGAGCTAGAGCCTTCAAAAAGTT GCTTTACTACTAAAAAGTAAAAAAAAAAAAATGTCGCAATTCTATTAGCAGTGCCTGTACCGTAAAAAAA AATCAGATAAAAGTGCTTGCAGTAAAAAAAAAAAAAAACAAGGCAAAAAGTTAGTTAGATGTCGGAAATT ATTGTAGCCTGTTAATTGTCATTTACTGTTTTTCTTTTTTTTTTAATTAAAACAAAAACAGTGATGTGAA ATCTATATACAGAAATGCTTCGTAGATGTAATGAATGCTTCTTGTACAAAACTAATGATATTGAGCAAAG CTGTGAGTGTTTCGTAGTGAATTGTAAATGATCCCATATATTTGTGCCAATGGTAAGACATAAGGGGAAA ATGACTTTTGTCTGTTTGGAAAGCCATCAGTTTTGGTCCATTTTGAAGAGAATGTGTTTGTGAAATGTCC AAAAGCACTCCTGTAATTGTTTGGGGTTTTTTTCATCCATGTTTGAATTTGTAAAACTGAATGTTTGCAC TCCCTACATGGACTTGTATTGAACGTGCTGGTCACATAGATGCCACAACTGTTTGCTAAAACATTCACAG CTATTGTAACCCATTATTTCTTCCTAAAGAAGATTGCTATGCTTATTGCAAACTGTAGTGCTATGTTCTT CTCACTTTATGAGGTTATTTTCCACAATTGGACGTTTCTGAAGATGGAAGTTTGAAAATACGGATTGGTA ATTTTCCTCTTTGCTGAGAAACCATCCAAAATCCCCCACTCTACACTGTGGCCATCTTGGTATTGTTCCC TGAGTCCATAGTGCAGATAAGTGTGATATGGATGAACACAACTATGGTGTCAGCCTAATTGTTTTTTTAA AGGGATTGGCTGGTGAAATTGTGTGTGTGCATATGGAAATCACTCTTCATCATAGTTTTCTCTGACTTGG GCACCATTGACCATTTCTGGGTTGAAAGTTGTAAGGTTGTAGAGGAAGACAAATCAATCTTTGTACATGT TGGAAAAGCTTTTAGGATGAAATTACAACTGTGAATAACTAATGTGCATGTGATTTATGTAGTTATGCAT TAAAATGTGTCTTGAAACAACTCATAGCGTTAAGTAGAAACTAGAAAAATATCATGAAAGAACCATTTCA CAAAACTTTTTTATTTAATCAATACTATGTATGAAATACAGTGTTTGTATTTTGAGTTTGGGATAATCTA ACCCTGGAATGATTCAATTGAAACTCAGAATGTAAAAAAAATAATAATACAACAGACAAAAGTGTTTCAT TTATGAAAAAAATAACTTCAGAGACATAATATCTGTCCTTTTAATTTTTTTAAATGTTCTCAACAACTCA TATTATTGACTGTCAATGCATGTTTCTGATTTGACCTGAACAAACTTCTCCAAAATAGTCAGTTGTATAT TTTATGAACAAGAACAATCTGGGCAGAATTGTGAAATGGTTCTTCGATATCTGATATGCGTTTTTTTTTT AAATCATGCTTCTTCATGATTTATAAATAGAATATATACAGTAGACAATGTTGTACATTACTTTTTTTTA AGTACTACCAACTTTGAAAGATATTAACTGAAATGATCAGTTTTCTGAAATGAAATATTAAAGAATAAGA ATTTTTTGTCCATAGATGCAGTCTATTTTAAAGTAAGATTCTTAATACTGTAAGTTTATATTCTTTTTAG AAAACTTTTTTGAATTAAGTGTGTAAGTAATTTGTTTTTTCTTGTTTACTTCCATTCATAAAAATTTTGG TTTCCTGTCATATTTCATGGTTTGACATAAGCCTCACTGTATTTTGGAGAGGCGTCATATAATTTTTTTT GTTTTTGGTGATTTTGTCAGATTTTTTTAAATTTGTTTCTAAACGATTTTGGTTTTCTCCTTTTTTTTGT TAATATAGTTTGATGACATGTATAAGTTTTGATGTTTTTAACAAGATTTTCACCAAAATATTGTGTCATT TGTAGTGATGTGTATAGTTTCCGTAGGCGTGCATCTTCTGTGGCAGTTTCAGCTGAGTCTTCACCTCAAA TTCTCCTTTCCGGAAATTGACGTTTATAAACAACTTGGTGACGATACACAGTTAAAGAGTGAAGCCCGAC AATCACCAGTTTCAAAAAGTCTAGATTGCAGTGACAAATTTAAGTTTAGAAAAATTCTGCACAGACCAGT AAAAGTTGCATTCTTCAACGACAGGTGTTCTTAATTGTGGGCGTGTGCAGTATTTGGAACGGGGGGGGGG GCGTAAAGTGGTAAATGGAACAGATGAAATATTTTCCCATAGAGGACCAGCTGAAATTGGCGCAGTAAGA AATAAGTCGCGTTAGGGATTAGCCAGATATAGAGCTGCACATTTTAAAGGTTTACCCACAACACATACAC GGAAAGAAAATCGACTTGTACAAAACAGATGTAGAATTTGTTCAGGGGAAAAAAAAAATTTGGAGAGGAT TAGGTGACGTCTTGTTTTAACTGTAAGGTTGTGACTCTGAATAGAGTAATTTTTTTTTCTTCAGAAAAAC CAATGTGCTTGGAGTGTGTTTTTACGTTATTTCCCACATATAATTCAAATTTTTCCAAGTGTTATCACTT TCTTGCCCTTATAATCCAAATCGTGTGATAGTTTTCATACACAACTGACGAAATGAAATTTACTTGGTTT TTATAGCAAAGTAGAAAACAGTGGTTTCGAGACGGGAATTCGTATTCCCACGACAGCAATGCAATAACAT ACTGTCAAGAACAATTTATCCGAATCTGTGGATAGTTCTTATCAGTATTTTATTATTCCTTTATGAGGGT TTCATAACAAATTATGAATCCATTTGCTTTAATGGTTGCCAAAGAAACTCGCGACACGCCTCATTGCCAA AAAATGCTCGCGCTTCAGAGCCAATCATATATGCCTAGCCAATGTTTGCCCATTTTTTGCCATCTTTTGG CAAATTTCTCATTTTAGGAATAACGATTCTGTCTGGACTGAACCGTGAATATTATCAACATGTTGTTAAA ATTCAGGGAAATAAGGTCTTACTGTGTGGCTGCTTTCTCGAGATCAGAAATGAGAAATTATCCAGAAGCA TTTGAATTGAAATATACACCCGTCATTTTGGGAGTGATTGTATTTTCAGAGATGACCAGCACATAGTTAA TTCATATTTCCCTGAATTATTGTAAACAGTACTACATGTATATCTGTATGAAATATCCCAATACTTTAGT GCAGGATTAATACCACATAATACCTGAAATGCAGTGGTGTTCTGAGGTTAGCACTACCAACTTGCCCAAT ATATTGTCCATTCAAATCAGGATTCTTTTAAGAATTATAAACTCCAACAACAGAAAAGGCGGGGGATAAC TTTTTGGAGATCATTCTTGTCAAGTACTCAACAAAAACAAAATAATAAAAAATACGAACGATTTTTTTTG GACATTTTTTCCCACTTTATATAGCAAGATTGAACTTACTTGTTATTGTATGTTTTATAATGAATTCGTA GGCGGAATAATTATCCCAAGTGCAGTCCTGCACCAAAGATGCTTACCTGGTTGTAGAAATAGTGATGCAA TCGCTCAACAAAGTTGAAGACGTCTTCAAGATAAACATTCTTCTCTGAAGTCACACCAAGAAAAGCCTCC AAAATGTTGTCCCTCCCCTCCCTCTCCCCAAAAAGCCTTTTTAGCATGCTCATGTAACACTCTCAAAGAG GAGCCTAAAATAGCAGCACACAGCAGATTTAAAAACTGTACAAATTAGTGTAACAACAAAATTATATATC GTATCAAGTGTTTAAAGGAACGGAATGCAACGAACCCGCTATATGGAAGCGTTTAACGTTTCCTGCTATG CTGCGTGCATGCCATACTAGCTTGGGAACGAGGTGGTGCTTACGTTACTCGACTCCATGTTGAAATGTTT GCGAATAAACCAAAAAAATCCAAGTAAATAAGAAACGCGCTTTGTCTTTGTTCGTCTTGCTGCTGTGGCC GAATAATCAAAGAAAATGTCAGTGCCACAATAAAAGACACCTTATATTGGAGTATGGAAACTTGAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds