Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT115165.1 TSA: Strongylocentrotus purpuratus WHL22.722389.0 mRNA sequence ATTCTGCCATGTCACGGCCCTGGGCCGAGTTTGTCAGGGCGGGGAGTGGGCGCGGCTAATTAATATGCAT ATATCATTGCATTTAATGCACAGAGCTAGAGAGTGATTACTTCCGTATAAATAATACTCGCACACACTAC ACGTACGTACATACGTTGACGATTTTGCTTTGGAGAAACAATTAACAGGTGCCCGGAGCTTTTCGAAGGT GTGCAAATTCGAGCAGAATAACAAACTTTGTAGCATCGTCACCATTCCAGAGTGTCACAGACGTGTGCAA TTTAGGTACATTCCTATCTCATTTCCCCGAGAATCTCAGATATTAGAAGAAAAATGAGTGATACGAAGTC TTGCGCCATGCCCACTACTGTGGACACAGATTTCATGACACTGACGAGGTTTATGATCGAGGAACAGACC CGATGCGAGGGAGCTACGGGGGAAATGACCCAGCTACTCAACTCTATCGCCACTGCCGTCAAAGCAATCT CGTCTAACGTACGCAAAGCTGGTATTTCTCGACTGTATGGTATTGCTGGTGGTTCTAATGTTACCGGAGA TGAGCAGAAGAAGCTAGACATCATCTCTAATGACCTTTTCATTAGCCAGCTCAAGAACTCCTTCACAACC TGTGCCTTGGTCTCTGAGGAGAATGAGAAGGTCATTGAGGTCGAGACCAACAGGAGAGGAAAGTACATTG TGACCTTTGACCCCTTGGATGGGTCATCCAACATTGACTGCTTGGTATCGATCGGTACCATATTTGGAAT ATGGAAAAAGGAAGGGGATCCCAAGGGGGAAGTAAGTTCATCCGATGTTCTTCAACCTGGTTCCAGCATG GTCGCAGCTGGTTATGCCCTCTATGGTAGCGCTACAATGATTGTACTCAGCACTGGTTGCGGTGTCAATG GATTTCAACTTGATCCTGCTATTGGTGAGTTTGTTCTGACTGACCGTCTGATTACCATCAAGTCTCGAGG CAAGATCTTCAGCATCAACGAAGGATACTCTCAGTACTGGGACAAGAGTATTGCTAAATATGTGGAATCA AAGAAGTATCCAGGGGAAGGGAAATCCCCATATGGTGCTCGGTACATTGGTTCCATGGTAGCTGACATGC ACAGGACGATCGTCTACGGTGGCATCTTCCTCTACCCTGCCCACAAGAAGAGCAAGACTGGAAAGCTGCG TCTCCTATACGAGGGAGCCCCAATGGCCTTTATCTGTGAACAAGCTGGCGGAAAGGCTACTACAGGAAAG GAGAGGATCTTAGACATCATACCGTCAGATATTCATCAAAAGACCCCGGTCGTCATGGGATCCACTTTCG ATGTCGACGACTACCTGGCGATCGTGAAGGAGTGTGAGGCTGAAGAGAAAAAATAGATGTAGAGAAGGAG AGGGAGAATGAGAGAAAGATAGAAATGGATTACTGGTAAATATAGTACAAGTGAGAGAGGGTTTGAAAGA GAGAGAGAAAGATACATGTGAATAGTAAAAATAAGAAAAGAGAGAGAGAGAGAGAGAGAGAGAGTAACAT GTATAGATTTCATCTAAAATAATTAATACTAAGTCACTAGGAGTTTTTCAAACTTAAAATGATAGTAAAA ATAAGAAATCACATAATGTCAGTATAGAAACAGATATAGAGTATAGAGAGGAAGGGAGAGGCTAGATGCA GAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGGGAAAGAGAGAATTGGGTGGGGGTTAAATAAGAAAGTAG GTGAGGGAGTGTAAGCCTTTTAGTAACTTGGATTGCCCCAATGACCAATCTATCGGTTGAAATTGTGCAG TTCTCCAGCTGCTGTTTTCATGAAATTATGAAGGTTTCATTATTCCATTTTACAAATCATTCTCTTTGAA AACCTTGAAAAGTGTATTTTCTTAGATATTTCCTTCTTTTTTCAGATATATATATTGTTTTAATATAATG AGACCTTGCAATGAGATTTCATGATTTGAACAATTATCATTATATTTTCAACTAAAGTGTTTTTATGCCT CCGTTACGAAGTAGCCAGAGACATTATGTTTTCGGGTTTTCCGCATATGTATATATGTATATGTATATGA AAAATAGCTTGTAATCACAATATTCTGAGAACCTGTTAAAGGGTTACAATCAAACCTGAATTTGAAAAAT TGCTGTTTTGGTTTGTAAATTCGCTCTATGGCAGAGGCATTAGTTTTGACTGCCACAGTCGAAGTTCCAT ATAGTTACCATATATATTACTAACAGTACTAAACAAACAGCTGATCACTTTGTTTTTCAATTGTATGCAG CAATATAAGTTTTGATACCCGGTACCTTTGCGAAATGTGGTAGCAATGAAAAGATGCGTAAGGAATGAAT AATGCAAAGTTGTCATTGGTGTTGATTGATTCAAAGTTCTTTTTTGGGGACATATCTGAAGGAAAGTTGA GCTAAAATGAAGCCTCACTGAGATGGTATATGATGAATGTCCTTACAATGTTGTTCTACCTCTGTGTGAT ATGATTATAATTTTCAACATTTATGCAGTTTACATTGCAGACACATCTTTTTGTGGCGCTACTTTTTGTT AAGCAACTTCATGGTCATTGCTTTCAAGTAAATGGAATAAGAACTTTTGATGTCCTACCTGTTAAACATA ATCATGTTGTAAGTGTTTTCACTGTGTTCATGCTACTTTCAAAACATTGATATATATTTTCTTCTAGGCT GATGTCAAAGTTGTAGAATGATGTTGCATATTTTGTTGTAGAAATATATTTGCTTGAAAAAATGATTTGT TTTTTCTAACGTTTGCACAAATGTTGACTGGAGAAAGGTGATGAAAATGTAATGATTAACAGGTAGTGTA ATGCATAAATTTTGAATATCTTAAATTGTTGAATGCTATGAGGCTGATGATAACTTGGTATGGATTTAGA CTTTAAATATGAACATGTTCACCATTTAAGGAGTGAAAATGTTTTCATAATGATAACTTGCTGTACTTAT GCCTCCTTTACATTATTCAATCCAGGAACATAGAGTGAGATGCGAGATGTTGAAAACGCTTTCACTCTTC AGCCTTTTTAAAATGGCTAGTACCAGAGAGTTTCTCTGTGGATGGAACCTATAGGAAATAAATGACATCA TATTAAAGGGTTTAACAATAGGATGGATTCACAATTAACAGCGCCCCCACCGGCAAGCCACAACAGGCCA ATTTTTTTAGCTCGCGGGTTGACATCTTTCAACCAATGCAGCACAGCAAAAGAATAGGCACCGATCAAAA TGACAAAAGTGGTCCGAACCGTGTACATTCCTTCAATGAGACTGATTGTTCTGATATAAGTGTACATTTC TATATTGAATTTGGATGTCAAAGTTGACCATCGATTGAAAAATTGCCCTGAATTTGGATGGAAAGTGACA GAAACCTCATTGTTGCTAATGAGTGTCAATTTGACCACTTTTTTCTAGCATCAGGGAACGTTTTTTATTA TTATTTTCTTATTAACTGATAACAATGATTGGACAAATTATCCCTGACCAAAAGTGACATACTGGTAGAG GTCACTTTGGGCCAAAAAATGGCCAAAATGAACTTAACATCGCGAGGAGGGTCATTTTGCCCCGGGTAAG CTATTCAAACCTTCCCCACCAAAAAATCTGATTAAATCCTCTTATCTCCTCGGTCCTAATTATAACAATA CCACAGCTGATATTTTTGTCGACTTTTAGATATGAGGATATAACAGAGTTGAAGTCTTCCATAATGATGC TTCATGGAAAGAGTGTTTAACGTTCTGTTTGCAACCAGAGGCAGTGCCTTATAAAGTCTTTCATGATTAT TACTTATTTTGTCTTAATACATATCACACTTTCTTGATGTAAGAAATGCCAATGATACATGTTCTTGATT ATCAGGTATTAAACAAAAAACGTATGAAACATCTCTGTTCCTGTACATTTGAACTTGTTTTACCTGACTC TTTGTATCTCTCATCTTCTCACTCATCATGAGTCAACCCTTCTTTAGCGATAACCTTTCTATGAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds