Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041596948.1 PREDICTED: Lytechinus variegatus USP6 N-terminal-like protein (LOC121405953), transcript variant X4, mRNA ATTTTGGTCACATGATCAGGCAAAAGGTGTTTCCAAGATGGCGACTTTCTTGTGTGCAGTTGGTGTGTTA TCGCGGCAATGAATGCGGATGTGGATTAGATATACCCAGATGGATCATTGCTGGAATAAATACCTGTGTA TAAACCATCAGCATTTTACTGGAAGCATTCATGATTGGTTGTTCGAAATCACACGCAATCTTGCAGAATA AAGTTCACGTAATGAAGGATATTTGTACGATAAACTTCTACACCGTTCAAAGATGACGGAAACACAAGAA ATGGAGGCTCTTCAAAGAGCCCATAAGGAGCGCCTAGACATCGTACAAAAATATGACAAGGGAAGAGACA AAGGTGCTCAAATAGACCCATGGGAAGATGCTTCATTCATCATCTATAAAGTCACAGATAGATACGGATT CTGTCAGGTCGACTTAGATGTTTTCAACTTCAGTGAAAATGAGCTCCCAGAAAGCCCAGATGAGGAGGAG AAAAAGGCAAAAGAGTTGGAACTGGAGAGAACACAGAAATGGTTGAAAATGGCCAAGAACTGGAAGAGGT ATTACACCAGTGAAAAGTTGACGAGAAGAATATATAAAGGTATCCCGGACAAGATGAGAGGAACAGTGTG GGCCATGCTCCTGGATCTAAATAAAATAAAAGATGAGCAGCCTAATGTTTATGAGAAAATGAAAGCGAGA TCAAGGTTGTACTCGCCGGACATCAGGCAGATTGATCTGGACGTCAATCGGACCTTCAGGAATCACATCA TGTTCAGGGATAGATACGGCATCAAGCAACAAGCTCTCTTCCACATCCTCGCTGCTTACTCTATGTACAA TACGGAGGTTGGATATTGCCAGGGGATGAGCCAAATAGCAGCCCTCCTTCTCATGTACCTTAACGAAGAA GAAGCATTCTGGGCTCTTCTTATCCTACTGACAGACACCAAGCATGCCATGCATGGTTTCTTCATTCCTG GGTTTCCCAAGCTGATCAGGTATCAAGATCACCATGAAAACATCCTCAAGAAACTCCTACCGAAGGTCCG CAAGAATCTGGACCGATTGGAGATCCACACGAGTCTGTACTCAATGAAGTGGTTCTTTCAATGTTTCTTG GATAGAGTACCGTTCCCTCTCACACTAAGGCTGTGGGATATATTCATGCTTGAAGGAGATAAGATACTCA TATCAATGGCGTATACCCTTATGAAACTACACAGAAGAGTGTTGATCAAGAAGGACATGGAGATGGTCGT GAGGTACCTACAGGAGCAGTTGGTCATTGACTTTGGTTACAGGGACGATGAGGTCATAGATGCCCTACAG GAGGGGATATCAGAATTGAAACGCTCAAAGCTACTGGTGCCCCCGCCCGCTAAGCAAAATGAGATGCCCA TCCTTCCCTTTGGACTGTCACGGCAACCGTCGATAAGCCAAGCCACGGGGCTACGAACGGCCATGCCAGT CAGCAATGGCACCAGTAAACAGTCCCAATCTCCCACCGTTTCTCAACCTCACACGTCCGAAAAAGACAAA CAAAATCAGGTTACCCAGTCAACATCATCATCTTCCCAACCAACGACTCCTACAAGTACCATTGTTTCAG CTTCAAACGGCACATCTCAGAATACCTCCCCAGACAAACGCAAACCAGAAGAGAGTTACTACAGCAGTGT GACTTCCTTTGAGAGCCAATACTCGGCTCGTTCTTCGGGCACGCAAGCCATGAGGAACAGCGGTGGATCC CCCGCAAGGTCGGAACCCAGCAGCAGTCGCAATAACGACTTGACACCGACGGGTCGCGAGTTTGTCGAAG GGTTCCCCTACCAGGACATGTCGGGTGTGGACGTTACGTACAGGAGGCAGAACTCTAATAATGAGAAGGG CACCCTGAGATCAGGGAAGGCATCTCCACTTAATGAGCGCCCTCAGAGTTTGCCCCCGTCCAGCCCCGCC CATACTGACCTCAGTGAGCGAAGGCTGTCCCTCTACGATAATGTGGACGTTTATTACAATGCGCATTATG AGCAGAGCATGGAGGAGTCTTTGGAAGCCGTTGGAACGCCAACGGCTCACGCGCAGGACGGGATGTTCTA TGTGACCGGAGTGACGAACGATCCTCGAGTGACGGGGATGTCGCAAGGGTTGGATCAAGCGGCAAGCACT GAAATTGGCAATACTTCCTCAAACTTCAAGACCTACCCAGAGCCTGGACAAGCTCCAGGAACCTCTTCGC AGCTGAGCTCTCCTCCGCCCCCAACCAAACCCACCAGCCTGGGTAACCTGCAGTCCTTTGAAGTACAGAA GACATCCCATCAATATCAGAAGAGGACGTCGTGGGAAGGGTCACAGTCGCAACCGAGCTTTAGCCCCAGC CGTAGTCCTGGAGCAACAGCATCCGCTCCAGCTCGACCTGCAGGTGTCTCCCCTGTGCGGACATCGCCAA CACGCAAGCCAGCCAGTCCCATCAATGGCGTTCAATACTTTCATTCACAGGTCACCTATATATGAAAACC TCTCCGGTAAGGGTCAAATGTCAAAGCTCAAAGGTCATTCAAGGTCAAACTGAAAGATGGGAGAGGATAG AATGTAAAAGAGGACCAACTAGTGTGTAACATCCAGAATAATATGTAGGAACAATATTAGATTAGATATA GTCAGAGCATTGCTTGTTAAAAGTAGTGTAATCCCTTAGGGTCAAAGGTCATAAGTCACCTCCTTATTCA AAATGCAAATATCTGCAGCAATAGGTGACATCTTGTGCCTCTTTTAAAAGGTGTTAAACATTTCTAAGTG GTTTGAAGAAATACATTGTAAGAATATACCTCAAGGTACAGTACAAGTTCTTTATCTGCAAGAAATCAGT AAGTTTTGGAAAATTGAATTTTGCAGATGAAATGAAAATATGTTTTGAAAATTTGGTAATTTAAATGATC AACGGCCGACATATCAATTATGAGCGCTAAACTTTTCATATTTTTATGAAAAAGTGATCATTACATTCTA AATAGCATGGAAATAAAACAAAATCATGAATTCTCTCAAAATTACAAAGATCAGTCAGTATATTGATTTG ATTGATGAATTATTGCCATATTAATATTTCTGTTCCTTTTCTAAACTATTGTAAATGAACCAAGAAATTT GGTTAATTCACATACATGCCCTAATGGAGATTAAAGAAACTCTGATAATTGTGCAAACACAATATTCCAA AAACATGCTTTAACACAAATTTTAACAAGGAATAGTATAAATGATTATACAATATGTTGTCGATTTGGGA TGTATACCCAGTAAATCTTTAGTGCGTAGCCACACTTGGTTTTTCTTCCTTAATTCTATTAACTTTTATC ACATTTTTTCCCCGAACATATTGTTTGTATTTAACTTTTGTATTAATGGATACTACAATAATGCATCTTT TATCAGTTACCTGTCATTAGATTACGAATAAAATAGTGTTTGTCTTTATCAATACTATCATTCACTACTG GAAAGTTCATATTTTATGATATTTAAGAGCTGTTTCTTGCATATTAACTCCATTCTTTTGGAACTACTTA TTGGTGTTTCCTTATTCACACCACTCTGTATACATATATGTATAACCAAAGAAAGAGAGTGGTGTTCTAA TCTCTGACCAAATTTAGCCCTCAGAAAGGTACCCATAGGAAAGAGAAGGGCTATTTACCAGTCTATGTCC AATTACATAGACCCACACACTCATTTTCATGTGTGTCTCTTTTTTGTACCATGTACATGTTTGGAGTATC TTTATTTCAAGTGCAAAACTATCAGTGTACATATTGTATATTTATTAGATAGAGGAGAACATTTCTACCC TATTTCTGAATTTTTTATAAGAACCATTTGATATAGGACTCTACATGTATGTTTGTGCCATAGGTGTATA TCAATGTTTTTAATACATTGGTTTTAATATTTTCATGGCAAATGTTCATTGTTGTCAGTTTCCATTTATG TACAGCGATAAGTAGGAAAATCTTCAGTTTCCCCTTTCCTCTTTCCTTACCTATTCCCATACATGTCGTT TGATGTGGGTTGTTTGGGTATTAATGTATACATTCTGTCAAAATCAAATGTTCATGTATTAATTAGTTGC CTGTTATCTGGCTTTCCATAGTTTCTGTTGATTGGATCAATCACATCTCTCTATAAGATGGGGCCCAGGA AGTTCATATAATGTTTTAATCATGTTTCAAAGTGGCAGCATCATTTTGCTACAATTTAAAAAAAAATAAT TATTTTTACTTTTATGAGGATTGAACTAAATTGGATTGATTCAAATATGACATGATATAAGTGCATGGCT GTCAATGCTTATTATCACATTTATCTTACTATCCCAGCTTCTGAATTGGAATACATTTTAAAATCTCTTC CTTTTGCCATCTTGTCGTGCATATTTTAGTCATTAGAGCTGTAAAGTAATTCAAATATTGCCTAAGTATG ACAATAAATTATCTGATGTGTTATGGTTTTCTTTTTGGGAAAGTAAGATGTTTTTTTAAACTTTACCTAT GTCCTTGTAGGGTTCTACACAATAATTTTGCACTTTGATTAGATTTACAGGTTTTAGTATTTTATTGTAT ATGAAATTTAATTTTATATCATTAGATGTATTTTGATTTAAGTAAAAAATGTGTTTTAATGGAACTTCTG AGAAGGTTGTGTACATGTGTAAATGTAAATTGTAATTTAGGATTGCAATAATATTTGTTTTTTGTATATG AATCAGAATGGCGT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds