Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030991019.1 PREDICTED: Strongylocentrotus purpuratus probable ATP-dependent DNA helicase HFM1 (LOC582272), mRNA CCTCCCCCGGTTTGTAGTTGTACGCACAGGCCATGAATAACAGAGTACAATTTTCAAGCCTAAAAAAACA AATGCAATCTTCACTTCTGTTGTAGGAGGCCATTTTCAGATCTGAGTGATGTCCCAGCTCCACCCTTGCT AGATGATATTTTGCCGTCACAAGTTTTCACCGATGACTTGGACTCCTTTTCAGTATCTCAGGCACTCGGC AACTCACCAAGCAAAGGCCATGGAATCTTAAAATCAAGATCTGCAGGTCTTCAACCAAGGCCAAGAGTTC GGTTTGTGCCTCCAGTGCAACGTAGGCAAGCCAGCCAGCCAAGCCAAGTTCAAAGCCAGCTATCATCGCA AGAGGACTTGTTCAATGACACCATTGACTCTCAAAGCCTGCAAGCCCCTCGAGAGAAAGGACATCCTTTT GATGAGCAACCTTACCCGAGCCAGCCAGCTAGAGAAGTTCATGTGCAGATGCCACCGCAGCTAAGGCATA GTCAAGATGATGAATTCCCAGCTTCCATCCATATTCCAGCCTCATCAACCCCAGGAGGAACAAAGAGAGG GGCGAAGTGTCTGCGTTCTATTGAAGAAATACCTGACCAGTACAGATCAATCTTCCCATTCCCATACTTC AACTTTGTGCAATCACAAGTGCTGGATGATATCCTGTATACGGATAAACCCCTGGTTGTAAGTGCTCCGA CTGGATCAGGAAAGACGGTTCTGTTTGAACTTGCCATTCTCAGACTATTGATCTCGCAGGGAGGTTATGA TAATAGGACTAAAGTAGTATACATGGCTCCTATCAAGGTCTTATGCAGCCAGCGCTGTGATGAATGGAAG GAGAAGTTTGAACCGCTGGGTCTGAAATGCCAGGAGCTGACAGGAGATACTGATATTGAAGACTTCTACC AGTTACAGGCCGTCAATATCATCTTCACTACACCTGAGAAATGGGATAGCATGACAAGGAAATGGAGAGA CAACCATTCTTTGGTTCAACTTGTTAAACTCTTCCTCATTGATGAAGTTCATTCTCTGAATGAAGAGACC CGAGGAGCCACTGTAGAGGCCGTCATCAGTAGGATGAAGACCGTCCAGGCCGCTCTACCAGACCAACGCA CCAACACCTCCATCAGTACACAGGAGCAGAGCAGTGGCTCAGGACTACGCTTCCTTGCTGTCTCCGCTAC CATTCCCAACATCAAAGATATTGCAGAATGGCTTGGATTTGGTGACCAAACTGCTGTCTTTCACAAATTT GACGACAGCCACAGACCAGTGACGCTTCGTAAGGTTGTGATTGGCTATCCCTGCTCTGATAACTTCTCAG AGTTCAAGTTTGATCTCTCCCTCAACTACAAGCTAAGTGGAGTCGTTCAGACCTACTCAGAAAACAAACC TACTCTTGTGTTCTGTTCTACTAGGAAAGCTGTAGAGCAGGCTGCTTCTATCCTAGTGAAAGAAGCCAGG TTTATCTTGAATGCACAGTGCAGACAGAGGCTTCAGATGTACAACAATAGGATCAGGGATTCTAAACTCA GAGATCTGGTCATGAATGGAGTTGGCTATCACCATGCTGGTCTGGACCTACAAGACAGGAAGGCTATTGA AGAGATGTTCCTTCAAGGGGATCTCCCTGTACTCATGTCGACCAGTACCCTAGCCATGGGGGTGAACCTC CCTGCCCATCTCGTGGTTGTCAAGTCTACACAGCACTATGCAGGTGGGATGTACAGAGAGTACAGCGAGA CACAGATCCTTCAGATGATAGGCAGGGCCGGCAGACCACAGTTTGATACAAGCGCCACCGCAGTCATTAT GACCAAACACAAGACAAAGGGAAAATATGACAATCTCCTGGCTGGAACAGAGGAAATAGAGAGCAGTCTT CACAACCACCTGATAGAGCACCTGAATGCTGAGATAGTTCTGCACACCATCGACAACATGGACATCGCCC TTGAGTGGCTCAAGTCTACCTTCCTCTACATACGCGTCCAGAAGAATCCCACCCACTACGGCCTACCAAA GGGGTTCACTCAGATGGAGCTGGACAAACGGTTGAAAGAATTGTGCACCAAAGACTTGACATCACTGGCT AGCATCAATCTCATACAGATGGACCAGCAGAGTAAAGAACTAAAGCCTCTTGAGACAGGCAGACTGATGG CAAGGTACTGTGTAGCCTTTGAGACCATGAAGCAGTTCACCAAACTGGATGGCAATGAGACTGTGTCAGA TTTGATGGTACTTGTGTCCAAGTGCAAGGAGTTCAGTGATGTTCAGCTCCGAGTGAATGAGAGGAAGGTG CTGAACAAGATGAACAAGGATAAGAACCATGTTACGATCCGTTACCCGATGAGTGGCAAGATCAAGACAA ACGACATGAAAGTCAACTGCTTGATCCAAGCCACCTTAGGGTCCATTCCTATCCAGGAGTTTGCTCTAAA TCAGGATTGCTATAAGATATTCAGGGCAGGCCAGAGACTCACCAGATGCCTAACGGAGTACCTCATGACC AGAACGGAATTCAAAGCCTTGCTGAATGCCCTGCTCACATCCAAGTGCATCCAAGCCAAGCTGTGGGAGA ACTCCAGATATGTAGCCAGACAGCTGGAGAAGATCGGTCCCACCATGTCCAATGCCTTGGTCCATGCTGG TCTGGATAGCTTCCAGAAGCTGGAGAATAAGAACCCCAGGGAACTGGAATTGATTGTAAATCGCCATCCT CCATTTGGGAATCAGATTGTAGAGGCTGTCTCTCATCTTCCAAAGTATGATGTCTCCATTGAACAGGTAT CAAAGTACAGTCCTGTGAGAGCAGAACTAAATATCACAGTTTGTCTCCAAAACCATGAGGCCGTAGCTCA GAAACAGACCACCAAACCCAACCACATGGTCATTCTACTTATCGGAGATGCAGACAACAAAGTGGTCTAC AAGCAAAGAGTAGCAGACTCCCAGCTGGTGCAGTCAGGTATGTGGATGCGTAAAGTGGAAGTCAAGAGGG CAATCAAAGGAGAGGAGCTCAACATTAACCTCATCAGTCAAGACTTTGTTGGTCTGGATGTACAGAGCTC CTACTCGCCATTCTACTCTGGACCAAAGCATCTGAGAGCAGCAGTAAAGAATGAAGCCCTGCCCCCTCAA CTGGCCGAGAAGAAATCCCCTGTGAGGAGATTGGTGCCTGGTCTACCTGGAAACAACCCTTCAAACAAGA ACAGGAGTCACCTACTAGGTCAATCAGACAGGATGGATTCTCAAAAAGGGTTCACAAATACAGAGTTTTC TTCACCCTGCGATGATGGTATACAAGATTTTGGAGGGTATGGAAGCCGTAAGCCCTGCAGCCATCGCTGC TTGGACAAGGACACCTGCGCTCATGACTGCTGTAAGTTTGGCGTCCCCATCAGACCCCCTCCCAGACCTA GGGCTCCACCAACCAAGAGGTTGCAGACTCCTGATGAAGAACTGGCTACCACCGGCAGCAACGCCTACAA CCCACAGAGCGCTGCCACCACACCATCTAGATCTAGAGGTCCTCGAGGTATTGATGGGTTCCTGGACCTG ATGAGACAGAGAGCTCGGGATATAAGTACGACACCAAATATCAAGCGCTTGAAGTTCAGTGACTCGACTC CTACCCCCTTACCCACGCTGGATCGGTTTGCCTACACACCCAAGAGAAGCTTGCTCCCCGCAATGGACAA GGCAGCTGATACACCTGTCGCCAAAACCCCACGCACCACCACCACCTGCACCGCCACACCCAATCCCTCT ACCATGGAGCCTCAGAGGACTACGGGATGGGAACACCTGGACTTCTACAGGCATCAGAGGGAGATAGAGC TCTCTGAAACCCAGCCTGAGGTGTCCCATGGTGTGGGTGGAGATATGTATGGTGATGATGATGATGATGA ACTCCCTAAAGTATCTCTTGGCTTTGATGAGGGCCCAGGTGATCTTCCTTGTTTTGACATTGGAGGAAGC GACATCTATGACGTGGATGACATGGACGACATTATCTGCATGGATCACCTTGACAGTCACTTTCATCCAA CCCTCAATGACACTGTGAAGGTCATCTCCTGCGATTCAGCTAAGCCCTATGAAGGCGCGACCCAACCAGC TCCGCAGAGACCAGGGTACCTGTGGGGAGGTGTGCCTTCAAGGCAGCCACATCCGATGCAGGAGCAGTCT GTCCCGAATGTGAGTGTGCCACCTGGGTGGAAGCTCTGTAGAGGGGACCCCAGTGAGTCCATTGCTGCGT CCAGTGCAACCCTCTCCCTACCAGTCATGGAGTACACCCTTACCAGTAGTCCTGCTGACCAGTACGTCCC GTTAGGAAGGAGGGGTCATCCTCTGCATCCAACTGTGAGACCTGCATGCAGTAATAACCTAGGAGGTTAC AGACCTCAAGGAGGTGGTGTCCAGTCCCTGCCAAGACCCCAGCTGAGTGATGCTTGGACCAAACCCCTCC CACCTACAAGTCATAATGGGAGGACTGGAACACGGTATGACCAATGTCGACTTCTCACCTTCTCTATTTC AGTTGAATCAATGTCAGTCTGGATTAAAACAGTGTAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds