Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030974273.1 PREDICTED: Strongylocentrotus purpuratus protein tyrosine phosphatase type IVA 1 (LOC763053), transcript variant X2, mRNA CATTACTGCCATCTCACTCTGTACAGGCAGGACGGGACGAGGTCACAGAGAGTTCATTGAAGGATGGTAG AGCGCAGGGGCTTTATTAACAAGTGGCGCAACAGTGAGAGTCTGCTGTTGTTGATCTTGTCAAGTTTCCT GAAGCTCTTCAGGGAGGGAAGAGGCTAAGGAGATAATGGCTTTCGTGGGTTTGGAATTAGGAAATTGATT CAGCTAATTCAAATCAAGCATTTATGGCGTCTGTCTTGGACACTGGAGAATACTGCCAAAGCCAACACAA ATAAAGTATCAGCCTCAAAGAAAGACTTGTTGGGGGAATACTAGTACTACTTGTCCTTGCCTCTTTCGCT CGCTCACAGCGAAATCAAACTCCGAGTACTGCATTCACCTGTCAAGCAGACCAAGGCTCTTTGCATGAGA GAGCTATCAGCTGGACTAGTTGTTCGTTGGATCTCATCCCCACGGTCTCTGGAACTTTTTTAGCCCCCGA CATCAGGGGTGTGAACTACACGTGCAATTCCTACGCCTATGTGGTGCGTTCACGTTTCTTCGGCGTGTGC TTGCCGACACTGCCGCGGACAGACCCACGAATGGGGTAAGATTCAGGTCGAGAGCAAACTGCACTGGCAG GTGCCTCCAAGGTGTGTGAGAGTCAGAAGACCTGCACGGTAATCGCCGCGGGACCTCTTGTTTTTTCTGC GGTAGCCTTAAGTTCATTTTTTGTACGAAAAAATCCTCTTCATAATTTTGTCTCAGAGTTGTCTCCCCTT CTTTCCATCTCACCAACCAGCTTCATTTCCTATCAGTAGTCCGGTATAATCGTCGAACGGATCACTGCCC ACTGCCCCCTTCCAACAAACCAATCACCTGGACTAGTAAGAATAGAACCCATTTTGAGGTAGTTCAGAAA TCAAGACTGGAGTTGGACTGACAGAGCTAAGACAAAGCGGAAGAGATTCTTTCTCCACCTGAGAAAGGGC ATCTTACATTTGTTTCTATTGTCGTCCATCCATGAAGAACCACAACATGAGTTCTATCCGGAGCGTACGT CCTGCTCCTGTAGAGATTGTACACAAGCACATGAGATTCCTCATCATCCATAACCCAGATAAGAATGGCG TGGAGCATTTCATCCAGGAGCTAAAACAGCGTCAGATCAAGGAAGTGGTTAGAGTGTGTGAGCCTACATA CGACGCAGCTGTCCTAAAGCAAGAAGACATCGAGGTCATGGACATGCCCTTTGATGACGGAGGCGTCCCA TCGTCCGAGATCATTGATCAGTGGCTGGCCCTCCTGAAGATGCGCTTCAAGGAAACGCCCAAGAGCTGCG TGGCCGTGCACTGCGTGGCTGGACTAGGCCGCGCTCCCCTTATGGTTGCACTGGCGCTGATGGAAGCTGG CATGACATACGAGGACGCTGTAGAGTTCGTACGAGAGAAGCGTCGCGGTGCCATCAATGCCAAACAGCTC CACTTCCTGGAGCGCTACAAGCCCCGTCTCCGCATGAAAGCCAAGAATGGTAGCAAGGGGGAAAGCTGCT GCCTGATGTAAACAGACCCTTCCATCTCCACTTCATCCTCCTCCTCATTTAGTCCTTCATCCATCCTTCA TCCAATCCTCCACTGGACAACTTGCTGTACTAATGATATTCTGTTAATAACCATATATTTGTAGTTGTAG GTCACATGCATGACGTTATCATTTTGGAATTAGCAATACACATAGTAGTGGGTTTAGAAATCGAAACACG TATTGAATTTTGCATGATTAGGTAATGCACCATTATTCCCATTACAAAGCATTCTTTAAATTAAAATAAA GGCATATCGGGCATTTATGAAATATATTATTAATTGATTGTGTATTGGTGTCTGCAGCATAATTAATTTC TGGATTTCTACCTTTAAGGATAAAAGAAAGATGATAATTTATTTTCTAACCTCCAAGAGGTGTAATAAAA CTATTTTTACTAGAGCCTAAATTTTACTCCCAGGAATGCAATTCATTTTATTGTGCAGAACATTAAATTT CTGATTATTCTTTCTAAACAAATTATTGTCATAAATGGCATGCAAGGCATTGCAAGGAATGAATTCACTG AAATTTTCTGTTCAAAAGGAACTGTTTTAATGATGTAATGGTGCATTACAAAGAAAACACCACAAAGTCG GAATCAATCAAGAATATTTTGATGGAAAAGGTACTGTCAATCGCATCACATCAGAAGTATTCAATCACGT CTTGGGTATTGAATCTAAAGGGAGCGTGTCATACAATACATTTAAGATCTTATCTCATCGGCATTTCAAG TCTTAAGTATCAAGATGGTTAGAGCTTTATTTTTATTTTTGTTTAATATCTCAGACATTGATATGGACTG TAGTATTGATTTCAATTTCTTCAAATAACAGCATTATGAATTCATATTACAAAGGTTAGATATAACAATA ATAATTATTTTTTTAATGTTCGTGTGTTCTTTAAAAATTATTAGAGTGGTTCAGCTTCATTGTAATAAAA CTGAATATGGTCTCGACACAAGAAAGACTAAAAAAAATACCTTGATCCAAAATTGTTTGATTATTCATGA ATTTAAAAAAAAAATGTAATTATGATTTTGCACATGCTAACTTATATTTGACAATATTTCATGTTAATAT CTTTGAAGACATGTTTGTGAAAAAACTGTACTCTGAAGCACAAAATCAAGATGACAAAAGTTTTCATATT TAGGCTGAAATGGGTAATAATGAGAAGCAAAACCTTACTTTGAGTTAACCTTCATTTTGACACCTTATTG AGTACATCACAACAAACAAGGCCACACCCACTTATGAAGGCCACGCCCATTATTCATTAGGAGGGCGTAA CCTCTCTTCCCGCCCATTCAAACTAATGAACAAATGCTACGGTCAGTTTTTCATGTAAAGTCTAGTCGTA AAGGCCATGTAGGGCCATTTAAAAACAAGTTATGGGCACTGTAAACATCCTGTATGGTCATTAGTCTACA CCAGAGCCACTTAATCTGCCAATTAATTGTAAAGCTTTGTAGTTTCCAGGTAATGGCAGTGCACTGCAAG GCCTTGTAAAGGGACATAAACACCCCCACAGAGCCAGTTTATATATGGCGAAAATCAACGACGATGGAAA ATGCCATTATAACCAACAACAACAACAACATGGTAAAAATGTGAACATTTTGAAATTCTTGTTAGTTCTA GCAGTAAGCAATATGTAGCGCCTGTAACTGCACCTAGATGCTGTAATTGCTACTGGATACTGGCAGTGTT CAATCCTGTATTGAAAAGTGGCTTTACGTGGCAATTTTGGCTAGGCTTTACGTGAAAGTTTGATTGCGGT AAAAGTAATGCCTTCCATCAGTACACGAGACCAAGTCTTGCATCTATCTGCTTTGTGTTCCAAGGTATCT AATACACATGGAAAATAGAAAGCATTGTTTCTTGTCTGCAAGCACACACTGTGTTACCCAACGCGGAAGC CACACAGAGACATTGAATTCTTCTATTTTTGAATTTCTACTCAGACAAAAAAAACAAAATGTGTGTGTTT GTTTGGATATGTATGTAAGTTAATGATAAATTGATATGCATTGTTGATGATTATTTGGTTTGTTTGTGAG TTGTTGTGCAACGATTGAGGGGTTTCTTTTTTCCCCCTCTCATTTTCATGTCTCATTTGAAATCTGTAAT TCTAATGACTTTTTTGGTCACACATGAACAATAATTGCAATGCATCGGAATAGGCAGGACTTGGGAAGTC CAGCTAACATGGCATGAGTAAGGTTAAGGAGTGCAACATTGATGTTCTAATGAGAAGAAATTGTTTAGAT TGAACAAAGTATCTCCAATAATGACAAGATATATTGACATTTCATGTATCTTAAGACACATTTGTTCTGT TAACAGGCAGAAGGAGGCAGCATTGATAGGCTTTCCTACAGGTTTCATTGTTGTGACCTTCTGTAGCTAA AGTGAAGGGAAAAAATGAAGTGTGAGTGAAGGGGCATCTTAAAATCGATAATTTGGAGTGGCTTTGGTGC CGTGGGATTCTGTTTTTATTTCATGGAATTTTTGTCTTGCTGAGGTGATGATTCCAATTTGTCAATTGGG AGTGTGAAATTTCAATGTACACGGATAATTTGATAGAATCTAAAAATTGTGCATCTATGATACTATTGTC ATTTGATTAGCAGTAGTGATTTTTGAAGCTTTATACCTTGATGACATTAATCAACGTTGTTTAATATCTT ATCTTTTCTTATATAAGCATTGCATTTTTGGGTTCCAGTATCGTGGCTTTTATTGATATTGATTGATGAT TTGAACATTTTTTTGATACCCAGCTCGGCGTGACTACATATTATCTTGAATGTACACTGATTGTTTAAAG TTTGCATGAAATTCTGGTGGAATGTTTAGGAAGATATTTGAATGGTGATAAATGAAAGACATTCATTTTG TAAACAGGTATTATCTAAACAGTATGCCATGCATGGCATTGGAAAATGTATTCTGGAATTGTAGATGAAA ATATTTTAAAAACATTCTCCTTGGGAATGTCTTAATAATGGACATTTCATGCAACATTCTTCCTCCTCAT TATCCTCACATAGCAAAATTCTAAGGGAGTAGGAGGGGGGGGGGGGGGCTATTCTTAGGACAAGTAATAT ATCTATCAAACTTTCAATATCAAATCCAACCCTCTGTCCACAACTCCACGTGCTAGTCAGTAGACATCGG TCTTAACAAAAACTTTTTTTGGGGGATGGGATGTATTTTGGGAGGAAATGAATTTGAGAATTTGTGGGAG ATGGAGAAAAGAAACCCATCAAATTTGTTGGCTCACATCAAACATTCAAATTGCACTTAAAGTATCACCA TTCACATATTATGTTTCCTCAGCCATTTAATACTGAAAGACTAAATCCTGTGTTTTGGCTCCCCCTATTT AACAGCATATCATGTCCTTTGTGACTTAAAGGAAATCAGAAATTTTGAAGGAATGAAATTGATGCCATTT TCTGTATTTTTAATCCAAAGGCAGTAGATCTTGTTCTACAATGTTTTTCTATTTCTCGTTTTATGTGTGT ATTTTCAGAATAGATATATATATTGGAAATGGACTTGTATAACTGTATTACAAGAAGATATGCTGCACTG TAGACTGAGAGCTCGCACCATGATGTACAGCACGGCAAAGTCATAGGCACATAGCATGTTGAGAGAAATA GTTGTGACACTTGGTGCTTGGTCATACATGAAGGTGAAACCATGTAGCTCCCACTAGTTCCTCTCATGTA CAATATCTATGTGCGGGAACTTCTAGAGCTGCTTGAAATTATAACTGGCCAATTGATCAGTAGCAACTTC TGGTGATGCAACTATCTCTCTCAACTAGCCATGGGCGAAGCATCAACAACAAAGAGAGACAATGAATTTA CTTTATACCTCACAGATTGTTGGTGCGAAATACAAAAAAAACGTAGTATCATAAACATAAAGAAAGAATG AAGTATTTATGTCTGTATATCTTGTGTAAATGTGTGTGCGCAAATAATATGTCTTGTAGTCGTAATTTTG ATTATTCTCTTTCACCTTTCTCACGTGGTGCATTTGTCTTTAATAAGGCTTCACTCTGGAGTCTTCAAGA AAAACGACCTAGAAGTGATGAATTAAAACACACCGCAAGCTTCTGTGATTTCAGTAACGCCGGATCACAA CTGTCTAAAGAGTAGTCCCGTCTGTTTTCTGATGAGCTAGTCATTGACTTCATAGATAATGCAATTTTGT TAGAAATTTTCCTTCAGATCTTGAAAGACTATTAAAGCGGGCTTTCATTTCTAAGATGTAAAGAGATATA TGCCTTATCATCATCCTAGTTTTGTTGATGGAGGGTATAAATGATTATCACAAGAAACTCCCCCCCCCCC TCCAAAAACAAATAAAGCTAAACTGTGCCACAAGAAAAAGTTGAATGGGTGCTGAATATGATTAACCTAC TGTGTGTGATAACGTTAGTAATTCCAGTGCCCTTCTGCTTCTGAAATTGAGCATCACTATTAGTATCGTC CTTCTAAGTTGTTCTTTAGAGTGAAGCCTGAGCCATAAAGCTGTTGTTGCATGTAGAAACAATGCACGAA CAAAGAAATGATTGAAAAGCAATACAGAGACAATGCTACACATTCATTGAATAAACAGAACTATGTTCAT CTGCTGTGATTGGTCTTATGCAGACTAGCAAGATGTAATGTACGAAAGGTGTCTATCAAAATGCGGCATT CAAATGTGTTTAATAATTATATTTAGAAAGGAAAGAATGTAAAATCATTGATGTATTTATTCTAGAAACT GTTTTTTCTTACAGCTTTCCCCTTGTGTAATACGCTTGTTAATCAGAATGCATAGAAATGATGAAATGTT GCTTTGCCTTGATAGGCAATCCAGATGCTTTAAATGTTGATGTTTCAAATGAAAGTTTTTAGTTCATTCA CCAAATGAATGGTTTCTATTAATCTTAGGATGATAGTGAAGCAAGATGCATAGTGATAACACTTCACGAG GGTACACAAAGCCTTGCTCACTGACCTAGGTCAACCAACTCTCACACCCATGTCCAACTCTTGCACAATT ATCATGGACCATCTTAACTCAAGTCTGCCAGAAGCTTTGATTAGAAAACTAGTTGCTAAAAAACCACAAT GCCGTAGTTTCATTTACATTTACCATGCTTTAAGTGGCTAGACAAGTATGAAGACATGTTAGAATTTCTC ACTATATAATTTCTACATTTCATTTTTCACCACTATACACACATTTTGATCAAATCGTCGCCTCATCTCC TCTAGAAATTGTCATTTTTATTTTATCATCTTGTATGTATTTTCTTGTGATACAGTATTATAACCAACGA ATTGTGCTCTGTTCTCTCTTTTTAAAACCATTTTTTTGGGGGGGTAACCTTACAAGATTTGATTTGATAT GTGCTGCACGTTAGGAGCAAGGTATTATGAATGGTTTGCATCTGGCCAACCAAGAGCCTCAAAATGTCCA GAAGCCAGTTTGAATTTATTGAAGAAAAGAACTTCATGGAAATGATCGAGTATTCTTGGTGCATCAGACC GGCTTCTGGAAGAATGTAAATGAATGGTAACTGCCACAAACACAAACCCAAATTTTTGACACTATAATTG ACTCTAGAAATGTGTCATATTTCCTTTCATTTAATAGCTTAATTCTAACTTTCTCCATGTTCTTCATGGC ATACATACATTTTGGTTGCTAATTACAATACTCTGATTGATATAGTGTTATCAACACTTTCTGTTTCGAA TTCATTGGTCTGCTTTTCTCAATATATTCCTAGTCTGATAATATAACATGGCTACTGAACACATCATTTT GGAATTGCAGATTTTTCTTTGCCAAAATGTGCATTTTACTATTAAACAGTTTGTTCTTGCGCTATGTATA ACGTGTTTTCGTAGGTTTCTTTTAAATTCTGCATGTTTATTGTCTGCACTGGAATAGCATGGTAATTATG GAACTGTTGGTTGTTTTGACCGAAGTAAGAAATGCACTGGTATAAGCATCTCATCTGTTGAAGCTCAACT TCAAATTTGTGCTGTATACTTTTTTTCTTCAGTCAATTAACAAAATTATGCCTTTAGGAGAGAGAAGTAT TTTTTCCCACTTTCATTATGCCCAATTCATTGATAATTGGGCCCAGATTGTAAATGTTAATTCAATAAGT ATTTATGAATTTCAATTCAGATTTGTGAATGTTGATTATATAATTTTTGGTATCATATAATGATTTGTTT TTATTTTTCATTTTGTGGGGTGGAATTTACTCACTTATTTTTATCTCTGGAAACAGTCTTAATAAAGTGC ACTCTGAAGGGTCATGAAGTAAAACAAATACTTAGTTGTGTGATACCATATCTGACTGTTTCAACAAAGT GATTTTTATTAATGTTATGTGAGTAATGAGGACATCTGAGAGAATAAAAACAGGAAAAAAAGAGAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds