Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030991515.1 PREDICTED: Strongylocentrotus purpuratus EF-hand calcium-binding domain-containing protein 5 (LOC588946), transcript variant X5, mRNA TAATGTCGTATGCTATAGAGGGCGCTCGCCGGACCTCAGAAATCCAGATGATCGTGCACCATAGCAACGC ACAGTAAAACAACCCGAAATATTGAGGAGTAAAAAGAAAAAAGTAAGATATTAAAGGATTGAGAGGTGAG ACAACATGGCGGAAGTACAGGCTGTCAGTCCTGCTGGTAGCCGAAGTATGATGGAACCCCGCCCACCCTC TCAGTCAGGTTCAAGATCATCATCAAGGGTAGGATTCACCGAGAGTGCTCACAGCAGACACAGTTCCGGG AGAATCAAATATGTTCCAGCCCATCGTCCACCTTCAAATGCCAGGTCTACACCCTCATCCACAGAGAGAC CCGCTTCTGTCCGATCCTTGAGGGAAAAGAAAGAACTGAACGAGTACCTAAGTCCAATCGTCAAAACGGC TGTGAGGAGATGGAAACGTTTCCACGAGCAGAAGGTGATCGAGCGCTTCAAGGAGAGGCGGGAATCCAAG AAGCAGCGTGTCAAGGATATCAAGGAAGAAAAGAAAAAGCTGGCTCGTCGCATTCCCATCGATGCCTTAG CCGTTGAATGGCTCAACAGAAATGAATTGACTGTGGATGCTAGGGCTTATTTACTGGAAAAACTGCTCCC CACCCTCATCTTAGGCACTGAAAAGCTGCTCATAGAGGCCGAGAGGCGGGACCTGACGGAGAAGAATGAG GCAGATCCAAATTTCAATCCTCTGAACTATTTGGCACAATACCTGATGAGAAATAACCCTCGTTATAGCA ACTTCCCAGAAGCTTCACCATACATCAGGGGAATGCAAGAAGTCACAGATGAATTGAAGCAGTATGTCTT TTCTTTTGAAGACAATAGACTTGCCCGGGTCAAAGCAGAAACCAGGAGGAAACGTGAGCAGATGGAGCGT ACAGAAGCATTGCAGACCCAGGAGAAGAGTCGTAGATCTGCTCACATCCGCAGGCAGTACAAGGATTGGC TGCTGGACCCTGAAGGCATGGTAGAGCAGAGGGCTATTCAGAATTCACTCACATCCTTCAGAGAGGTCCT AGAAAACTTGCCAGAAGAATTCAAGAAAGCATCCGACTTCCTTGCAGAATTGGATAAATTAGATGCTAAC GAAGAACAGTTTCATGAGGAAGAGTTTGCACAGTATCTCAAGAAGTACGTCCTGAAGTTGGCTCCTGAAC TTTATGATTCACTCATGAGCCACATGGCGCAGTGTGCTGTTGCTTATCGACATGCTGCCGTGCTGGAGGC ACGAAGGGATATTCTTCTGTCTCTCTTCACTGGTATCGACAATGCCGATGTGGGCATCCTCAACAGGCAT AGGGTGCTGGGACTCTTCGAGAACTTCTGGGAAAACGTGCCCTGGTCTATCAAGCGTCATTTGAGAAATC CAAGGAAATGGCCTGTAATAGAGCTCAATGAGACAGATGAAACAGAGAGCATTTTTTCTGTAGGGAGTTC CATCTCCTCTGTGAAGACAAGCAGCATAAAGGAGCTGGAGCCTGAGCCTGACGTACCCTCAGAGGGCGCT ATCCAGACGGAGGGTGAGGAGACGGTGACAGGAGAGGATGGGGCAGCTCCAGCAGTGGTGGAAGGGGGAG AAGCTTCAGAAGAGGGGGCAAAGGATGAGGAATCAGAACAACCTCAGGAGACTGCAGAGTCCGTCCAACC AGAAGAACCTGCACCTGCAGCAGAGACTGCAGAGGGTGCTGCAACAGAGCCGCAGCCCCAGGAGCAGGAG CCGCCTGCAGCAGGTGCAGCAGATGCAGAGGCCGCTCCTACAGAGGCCGCTCCTGCAGAGGCCACACCTG GAGAGGCAGCTCCTGCAGATAGTGCTCCAGTAGAGGCTGTACCTGCAGAAGGAGAGAAGAAAGAGGCTGA AGATGTGGCAAGTGGTGATCAGGCTGCTAACAGTGCCGAGGAGGCTAAAGCTGGGGAAGACAAATCGCAA GAGCTAACATCCTCAGCCAAAGAGAGAGGTAATTTACTACCCACAACAGCCAATACCCAAACGGGCCGTT CTACCAGTGTGTCTTTCCGTGAGGATGCTATCAAACTCAAAGAAGAGAAAGCTGATAGTGAAGATGGACC CAAGAGTCCTGTGAAGACGCCCACTGTCCGTAGCGGCTCAAGGACGGGTAGTGTCTTTGACGAGAGCGCT CTCAACTCTTCCCAGTTTGTGCAGCTTGTGGAGCTGTTCCTGGGCGAGGATTCCCCTCAGTACGCCGTCG ACGCCCTGGTCAAGTTCATCACCGAGGGTTACGTGGAGACGGAGCAGGAGAAATTCCTTCGATTACAGCA GGCGAGGCGGGAGGCAGAGTCTGTCAAACGACGTCAGATGGTGGATCAACTCTTTGACAAGTGGGACAAT GATGGATCCGGCTACCTGGATCTTGAGGAGTTCCATTCCATCATGGCTAAGTTCAAAGACAACATGGAGT CTAGAATCATGGCCAAAGCCAAGCAGAAGCTGGAGAAGGAGGAGCTGGACAACCGTTTAAGCAAGCAGGA ATTCAAAGCTTACGTGGAAGCAGTGTGCTCTCTTCTACCAGGTGGTCCAGACAACTTTGATCCACTCATT GATTTCCTAATGACAAGTGTGGAAAGGTCATACGAGGAGAGAATCAGGGGTCAAGCAAGGAAGAAGTGGT TAGCCTCTATCATCCAGGCAGCTGAGACGAGCGCTGGTGGCATGCAACCTGTCTATAAGGGTGTCTTCAA CTCACTCTACAAGGACGCTGATCAGCATGGTCGAGGAAAGCGCATCAGTGCTAACATCGGTCTGCTTGAG AGGAACGATGTCAGTCCAGCTCGTGGCCCGACCTGTCTCCGTTACGTGGCCGCCACGCCCGACGATGCTG GCTTCATGCTCAATAAGATCTTACACAGAGATATGAAGGGGATCAGTTTCTCATCAATAGACAGTGGCAA ACCCATCCACGTCCCTCGAGTTCAGAACCACGGTAGCATCATGTTCTGGAACCCTGAACGTGCTGATGAA AAATGGGATGATGAAGACTTTCGGCCATCTGTCCTTGAGGAGAAATACAAGAAGATATCCATAGATGATT ATGACCCTGCCAGAGACCGCCAAGGATCGTTCCTGGTGATACCGCTCAAGGACTTCAGGAAGCGTGTGTT TGGTTTGATGGGGATTGATACCTTGAATGACCCTCATGATAAGAGTATCTTCATCACCCATGAAATCAGC TTCTTCCAGGGTGTGGCCAAATCCTTCTCGACAGCCTACCAGTACGTAGAAGTGAGACGCAAGACGCTGC GCATCGCAGAGAGTGCCGTCTCGTGGATCCACAGACGCAGTCCTCATGTCCAGGAGATCAATGTCTTCCT GGTTGAACCAGATGATAAGATTGATGACTTTGTGCTGCGTAGGATGATAACTACGGATAAGAAAGGAACT ATCACTGTTCATGAACGTCCCTCACGCTTGGAGCGCAAAGAAAACCTCTTCAGGGATTACCTGTTCAAGA CCGTGGACAACTCTGAGACGGTGACGGCCGATGCTTACGGTCAGCGCCATCTTGCCTTCCCTTTGCGAGA CGTGGACGGGCGCTGTTTGGCTCTGGTTGATCTGAGTATTGGTGACCTGAAGCAACTCCCAGGTCATGAG AACAAGGAGGTCCAGAGGATGCTCAAACTCCTGCAGGCTGCTCACAAGGAAGTGTCCCAGGAGTCTACAG GAGGCGACAGGAAGATTGTACTGGAGGCGGAGAAGGGGAGCGAGGAATCGCGTATCGACATCATGTTTGA CCGTATCATGCTGACCGACCTGCGTAACACGGTCAGCAAGCTCAACGCTCAGGCCTTTGCTGAGCTCAAG AGCTACAAGGATCCTCCTAAGGTCATTCATAGCATTCTGGTCTCTGTCCTTGCTCTCTTCTATAGAGACA AGTATGAGGAAGGTGAGCTGGATGCATGGAATACTTGTAAGCAGTTTGTTGGTCCTGAGCTGATCAAGAA GATCGAGGAGTTTGATCCCACGGCTCAACACATTCCTGGAATCGTTGAAATGATTTCTAAGCATCTTAAA GATGTGCCCCATGGTGCAGTAGCAAAGCATGGGTCGCTGCCGGCCCAGAATCTCTACAACTGGGCCTTTG TGTGTCTCTCCCTCCTGGAGCACACCAGCAAGATGACCAAGAACAAACCACCTGGTATGCCTGCACCCCC TGGTACAGCAGCCTCGGGGGAGGTCCGCACCATCGAGCAGTAGATCTTACGTCTGCTTATGACGTATACG CAAAGCTCAGCCAACTATTATGAGGAAATATGTAATGAAACTTGACAATAGTATAGAATGGATTGGATCT GTCTTATGGCCATATTAGTGATTGCGGGAGTTTGGCAGCTTTTGTTACTCAGAGAGAGAAAAAGAATATT TTGAAAAATTATAAGTCTTTATTGAGAACATTTTGATCAAATCCATGATTTTTACATTTCAAGCAGTGAG GTAGCCTTATATACCCATTCAAAGGGAAAACTTTTTTTTTTAAATTGGAAATTATGACAAAAAAGTTTTC TAGTTACAAGAAATGTTGGAGAAAATTGGCAATAATGAAAATTAACAACTACAGGTACATGGAGGGGTAA AATTTTCAGAAACTTGGTTTGGGTCGGCTGTAGAACAAAAGCAGTCAGTGAAAAAACTCAAGTAGGTTTC TAGACCTTCAAAAACAGGAAGTCCTTTGCATATGATATCAAAATATTTTTCACTACATATTTGCAGGACT AACTTAAATATGAATTTGGTTACAGTCCTGCTTAATCTTTTTTTAATAAAGAGATCAGTTCAGTCAATAT AGAATGGAACAGGGTATCCTGTAAATACTTTAGTATTTTCATTTTTTTGTTGAAAGTATATTATAAAGAC ATCACTACTGAAATCCTTTTATGCTCTATTGTACTAATTCTGTACTTTTTGTATTATTTATGCATGATCT AGTACAGACTTGCATAATTACATTTATTTGGAAGTTGATGAGCGTATATATATACCTTTCTCATGAAGTG AGTATATAACAAGTGTGAATATCCCATACAATCAGAAAGAAGAAAGAGAAGAAGAATAAGAGAAACAAAC TTATGTGAACGGGAATTCTTTCTAGTTCTGGAATGTTTCTGAAATTATAGCTTCCAGCTACCGGTACTTA TCTTTATCCATCGAAACTGTAGCTGTATTTATTCCTTTTCACGACACCACCACTGCCGTTTTGTTTATTG TGCATTTTATTTTATTTCTGTTCTTCCAGTCACTTCAATTATATTTCTTAGGTGCTCTTATTTCTGAACC ACCATTAAAACATTTGAATACCTACCAAGTGTTTACTTTTTAAATCAAATGTATATAGGAATGGAGAAGA AATATTGTTTGTAGATTGACATGGTCATGTTTTCTGTAATATTATTTACGAGCTCTGTATAGCCAGCAAA GTGAGTACGAGACGTTTATTTGAAACTAGTATTTGGGTGAATTTCCTGATGCTGCCCTCAAACTCTGCTT CCTTCATGATTCTGCTGATGTATTATTCAATGTATGTACCTGTGTTTTCATTACTTAAACTACCATTTCC TCTGTAAGGGATGGATACTGCACTGCTTACGTCACTTAGCTTAAGATTTTGAAGCATTTCACTGCAATCT TGTAGAACAGACATGTTTGAGATCTAAGGTATGTGGTCTATTAACGTAGAAATATTTAATACTACATAAG AGCACTTGTATGAGAGCCCAGGTGCAATGAGAATTCAAGTTTTCCTTCTTTATTACTTGTTTTAGAATAC ATAAATTATTAACCTGGTTCCTATCCATATATTATGACTAAAAAGTTTTGTTTTGTATCAAATCTGTATA TATTGTATAGAAATAATATGCTCTGTATGAGAATTACTTATTATAACCAATTCAATAGAGCCGTCCATAC TATACCGTCCTTCCATAAAATGTATCGTCGGTTTGGAGCCAGAAAGGGCATTATTATTAACTTATATATT TAAACACAGAGTTACATGTAATGCCCTTCTGGCCTTGAACAGACGGTATCTATTGTAATATACTATCTAT ATAAGCTATATGAATCAAACTTTGATATTTTAAGGATGTTTATTTAGGATGTTTATTTGTGATCATGATT TGTGATCAGGCAGCTATCCTTAAACATTTCTTTGTCAGTGAATGTAAATTAAACTTTCTTTCAGGCTATA CATTTTTCTTTACAAAATGTTGTATACTTATGTATGTAAATTTGTATATAAACCGTGTACATTTACTAAT TCTAGAATGAACTTTATTGTACAAAGCTCATGTAATGGGGTGAATTATATTAAAGGTTTAAAAGTATATA TTTGTACAATATTTAATCTATTGTATATTGAATAAATCGATTGCATTTCCACCTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds