Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030974133.1 PREDICTED: Strongylocentrotus purpuratus CTD small phosphatase-like protein (LOC586513), transcript variant X1, mRNA TTGATCTTATTATTTTCCCATACAAAATGTTGACCCGAAACCTCCATTTTGGAACGAACGTAGTAAACTG TGCCGAGACTGCCAATGCAAGGATTACTATCACACAGATTTTCAGTAAGATATTCTGTGAGATTGTCACG AAAGCACCCTAGATGGAAAGTACTTCCATTATAACACAAGTAAACCGGGATGAGGAACAAATAAATAGCT TCCCTACGTCGGAATCAGGGCCAAGCTCATCGAAGAAGCCAAGAAGTAGAAGTCTACTCAATACCTTCCT GTGCTGTTTCGGGTCAGGGAGACATGGCACGCATCAAAGCGTACCACAGACATCAGATCAAACTGATCAA AGGTCGCTCGAGCACCGTCCAGCTCCCGTTAACGACCCTAGCACGCAACCAAATAAATATCTACTTCCCC AGGTGAGGCAGCAAGATGCACATAAATGTTGTATAGTCATCGATTTAGACGAGACCTTAGTACATAGTTC ATTTAAGCCCATTTCAAATGCAGATTTTGTTGTTCCTGTAGAAATTGATGGCACAGTTCATGAGGTATAT GTATTAAAAAGGCCGCACGTGGACGAGTTTCTGCAGAAAGTGGGGCAGCTCTATGAATGTGTGTTATTTA CAGCTAGTCTTGCAAAGTATGCAGATCCAGTAGCTGATCTGTTAGACAAATGGGGTGTGTTCAGGTGTCG ACTGTTTCGGGAATCGTGCGTGTTTCACAGAGGAAACTATATCAAGGATCTCAGTCGACTGGGTCGTAAA CTGGAACGTATTGTAATTGTGGACAATTCTCCAGCTTCATATATCTTCCACCAAGATAATGCAATCCCTG TGAGTTCGTGGTTTGATGATATGTCCGACACGGAGCTCCTGGACGTTCTCCCTCTCCTAGAGCGCATCTC ACAAGAGGAAGACGTCTACAAAATACTCAAGAAGGAGAACCACAATCACATAAAGCGCTAGAAGATTGAG CTTGGCTTCAGCGCCCTATATGGAACCTCCGCCCAAATCGACTAGTTCCTCAAAATGATTGATATTGACT GGACGTGCTGATCCTGCAGAAATACCTTATTACCAAACTGCCAAAATGTAGTGTAACCAACGTCACCATC GGGAGATCTATTTTTAATTGTGATTACGTTGTAGCTCCATCTGCGTTGCTGCTATGGTCGACGTAGTCAT CCCAAGAGGAATGCTGGTTTGGTTGGTATTGCCAGCATCTTAGTGATCCTGCCATTGCATGTAGTAGTCC TCCAGTCCTACACCCCACCCACCCACCCTCTTCCAGTATCACCCAGCCAAGGAAGCTGTTATCAAGCATT CTCGGTATACTTAGGTGTCTCTTAGTCCTCTGTGCTTTAGCTTGAAAGGAAACTCCATGCAATAATTTAT GGCTGTCCTGTACAGGAAGCCAGGTCTGTGATAGCTGTTCAATGAAGGAAATGTTGTTATGATACCAGTG CAGCTATACCAAGGTCAGTCCAGGCATGTGGGTCAAGAACTACCCTTTGCTTTGTAAACTACCAAATCTC TCAAGGCCGGCATATTTCACATATGACGATTACAGAAAAAGAGAGATAAAAAAAATATGCAAACTCTTCT GCATATCTTTCTTAAGCTGGTATTATCCTCACTAATTAAAACCAGATTATTTTCTGTCACAGCACCATCA TTGTTTTTTGCACATGGAGAATCACAGCTTACCTAGAGCTTTCATTGTTCTGATCCTTGTACATTGAATC CGTTACCGTAGGTAGGAACAGCCAGCATTAATTGGTATGTCTCTATGGTGCAGATGCACAAAATCATAGA CTTTGCACTGTATGTTCACATTGAATAGATAAAGGGAATGAAAGGCAGTATTTGTCAGTGATATGTGACA GATTTATCTGGATGATGCTGTTAAAAATGGACTAATCTCTTGTATATCTGTCTTTGTTTGGTTGACCGAT GAAATATCAATCCCTAAAAATACAAGAAAAATCACTGCCATTGTGAACCAATTTTCTGATCCTTTTTTAT ATATTTCTTAACTTACCGGTAATTCATTCTTCTTTGGTAACAATAAGCCATGCCATGGTATTGTAACAAT ATACCAAGGAGATTGCATTCTTTGAAGAAGAAAACTTATCAGGTATTTTGTTCATGCAGTATTTTTAAAT CAAGATACAATATTTGAAATGATACAGAAACTTTCAATGGTTAGGGTGATCATAACATATAATTCAGGCT GTTACCAACCTTAGAATTTAGTAAGCATGCTTTCATCGATTCCTGTGGACTTTCTCAAGCCATATGATTT TTAACAGCTTCTTGTTTGTTGCCTAGGCAATGATTTTTCACAATGTTTGCTTTAAGAAGGAAACTGGATA AATTTGTCCATTTTGCACAGGAATAAATGGCAAGCTGGAGATAAGGAAAGGTGACTGCAAGAAAAAGAAA CAAATATGGGTATGCTCCTGTGTTGAGTTATACCTGTCTCTTCAAAATGCAAATATATTAGTTGAATGTT TGGACAAGAACTCAACGTGTGTTTGGATCAGCTCCCTCCTAGCGACCTCGTTAGTTGAGGCTCGAATATT GCTCATAATGAACCTAAATACAGGTCATGGCAGCAGAACATGTTTGAAATACCCTGCTGTAATTTGATCA AGTATTATTATATCAATGGTAGTTTTCTTCACAAGACAATAGTGAATATGAAAAGATGCTGTTAAACCTC CACTTTGTTTGAAGGTTATAGGCCCTAAATGTGAAACAATTGCTAGATGATGCAATTACAATGCAAAACT GGCACTAACAGATAATCTAGAATGTACTTAATATGTCCTTAATAATAATTTGTCTAGGTGTCCTACAAAT TATTATTATCGTCTAAACTATGCTGTGATGTATTAGTCAAAGCTGTCCTGTATTTTAAACCCTTGTCCCC TCAAGCAGCATAGCAGCAGAATGTCTTTGACATATAGTCCAATCTGAGGTCAAGAAACTTTTGAGGGGCT TTTGTATATAAATATTGTATCTGTAATTACACCACGAAAAACACACATTGTATGTTTATCTCATGAAAAT TTATAAGCGCATGATCTGGACTGCATGTTGATAAGGATTTATAACAAAAAGAAAAGAAAAAAAAATATTA AAAATGAATGACCAGTTAGGATGTGAATGAATAGAAAACATGTTGGAGAGTGTCGTTTTAAGTCCAATGT ATTGATATTTTATCTTTTTTTAAACTTTATTTTCTTCATATATGATGATGTAGGATATATATATAATAGT TCTTGTATATTTATTTTTTTCAAGAGGAGATTGAGGTGTGGATGACACCTTTGTGAAATCATAAATCATT GAAAATTAGCCTCCGGCAGTTTCAAATTGGCTCCTAAGTAGTGTTTTGTAGTGTTAGCTTGATTTTCTTT CAAAGTGGTACAGATGTGCTTAAGGTTTGGTTTCTTGATTGTGCAATTAAAGCAAGTACCTACTGAAAGA TATGGGGAAGAAGGACAACGAATCATAGGACAACTTTCTTTTTAAACATAGAAAAAAAGGTGACCAAAGT TGTATGAAGAGCTTAAATTCTACAAAATATTGTTATAAAAGGTCAGGTGACATTGTTACAAAACAATGTT TTGTTAGTTTTTAGAGATGTTTCTTCCTTCCATCACAGTTAAGTCCATTTGTTTGATAGTCAATTAAATG GTTTCTCGCAAACCAGGGATCTTTTTCTCCTCAGAAGTATTTTGCATGGCATACAATGTTCCGCCTGCTG GAGGTCAGTCACCCCAAAGTGATGTATTATTGGTGACACAATTCATGCATGATTCCATGAGAAAAACATT TTCTTACTACCTTATCAACAGTCAAGGTCATGTAATATTTTTGTGTTATAATGTATAGTTGTTGATCACT GAGCATTAGAAAATGGAATAGGTGGAGAGTCAGCATTTGAAAGTAACCTCAATTTCTTCACATACATGTA CATGCAGGGCTAACGGATGAGAACTCAACAAGGAAAAAGCTTTTGTAAATTACAGACAAATTTTAAAGTT ATTATTGTGCAGAGTGGGGCATGCTAAAGACGTGTTTGTACAGAGTATATACAATTTTGTTGTAGATAGA TAAAAAAATTAATGCTCTAATGAGATCATATTTTTATTACTAACTGTTCATTTTTATATAAATTTGAAGA GAAATGAGACGGATGTATAAATGCTGATGTGTGTTGTAATCAGTTGGGATATTACGCCAGCATATCATTC TGTTCACACAATGCTACAGAGTGGCTAGGAAATAATATTCTTTTAAACAAGCACATTGAATCGTAAATCA AAACAGTCAGGATTTTTTAGATGTTTGCCAGAGTTTTTTTAATTTCTTGGACACTCTGTAGAATTTACTG TGAGGAAGTGTATATGTTGGAACGGAACGAATATGCGTTATGTAGATTATGTGAACTGTGTAAACCTCTT CAATCATTCATTGTATATGGCTCTTCATGGAGATCGTGTTATTTTGGAAATCCCCATGGCTCGTGTCCTC AAAATATTTGTCAAATCTTTCTAGATTTCAGGAGATGTTGCATTTTGGTATCATGCAAGATGATCAGATA TGTGTATTGTCGTCATGAGGAGTATCAAAGTTTGTGAAATGTAGTGGGTTCAAGTAAGGCAAGGATATTA CCCAAGAGTATTATAAATTCTGCTCACTATTATGTCGTGTTTATTTTGTGTTTTTAACAAGAAAACTGTA TTATACTGACAAGTAATAAGTGTGTTGTACCAAAGTTATATATAAATATATATATCTATTTTTTCTTTTT TTTTCTTCTTCTTCATAGCAGCTTGAGATCATATCTTTAGCAAGTTGTATATTCTTCGAATGAATTTGTG TTTACATCACAATTCATCCATATTAGATTTATTCTCTTCATTATAACGTTGACAACATGTCACTCCAAAG TTTTGCTTCAGAAATATGATAGAATATAATTTTGATCATGGACCTTTACGATATTAGCTGTCTGTCACTC AGATGGAGATGTAAATGATGCAGCAACAGTTGGTTTCAAGTAAAGTTCCCTCTTTTAATTATTTTAGTTT TTACTGGTAACTTAAGAAAAAGTCATTATGCGTGACATTATATATTAAATCCCTAATCAGTGGATGTAAT TTTTTTTAAGAGTTCGATCTACACTGTATTAATGGTAGCCATATATCAGTATCAGGTCAACTGTCTTGAT GTGTGGGATCTTTTTGTAAGCTTTTTAAACAGTAGGCTTTCAAATATATTTTAACCTTAAATTGTTGTTT TTTTTCTTCTTCATATCTGCAGTGATTTTGATTTATCTTTTAAAAATAAAAATAAAAAAATCATGAAGAA CATTAATGTTACACTTGACCTCGAACAAAACCTATCCAGCATCACCTAGCTTTTGGTGTGCTATTAATTT GGAGCACCGTAAGAGAGTGAATTGCAGTGAGTAATTATTGGTATATATTCCAATCTTACATCAAATGCAG TATATATTTCTACATGAAAGCATGAAACAAGTACATATATACCTCATCTTGTAATTTGCTTTTATTGAAA CTTTAATGTGTCTGTATGTAGTTTAATGTCTCTTCTTCTCTCTATCCTAAAATAAGATCCGTGTAAAGAT ATTTAGAACAAAATGATGAGAAATCGTTGATGATGGATGATGCCTGAGTCAAAAGAAACGGGTTGAGGAT AAACTTGGTATCTGATTTTGAATATATTCTTTGAGGTCACAACTTACGGTATTTGTTTCTAATGAGTTTG AAGTAATGGGACTACACAAACTTTGTATGAGTTTGAATTGGCATTAGTTTATTACCAAACAAGAGGTTTT GGTGATTGGCATTTCAACAGTAAACAAATGTTTTCACCTAAGCATTAAAGGGGCTTAGCCCAGGTTTATA TTTACATTTCCATTCGGAAATATTAAGAGATTCTTCCAAAATATATTAAGTATTCACAACTTAATGCATT TACAGTATAATAAAGATAGCAATTATTTCATTTTAGCACTGCACCACTTTTTACTTTTTTAAATATTTTT TATGTTTGCCTCTTCATCTTAAAATTCTTCTTTTAGACAAAAGGGATTACAGATGAAGTTGAATTTTCAT GATAAATTTTCTGACACACACACCTATTTTCTTCTGAAATAAAATGCACTTTTGATACATGTAACAGTTT AAGCGCATTTACTAAATGGGTTTTTAACTGTTACCTATGCTTTAGTATTTTTGTATCCTTCCTAGAGTCC AAACTTGCACATGTTCATATTATAATGTAAGGATATACACTTGGTTTAGATATATACGAAAACTGTTGAT TTGTTATTTCTAAATTGTCAATAGGCTACAAAGTGTCAAGATGACAAGGGGACTTTTGAGATATCCATTA AAAGTCACATAATATACAAAACTGAGTAAGTATTAAAATAAAATCAACAGATTGAAAAATCCTGGGCAAA TCAAGAGAAAATAAATCATGATTGAGAAACATAGATCAACAAGTGACATTAATACTGTATTTAGAGTTTG ATTTTCCAAATTGTACAAATAGGAAACTTTGTTTGAATATTGTGCACCTGCATAGGACCCCATGCCGTAA GTTTACATTGTAGGTAACTTTACATTGAAAGTTGGGTTTGAAGTCTTTTGTCATAGGATGTCTTTGTTTC AAGAGATGTATCACTATTCAGACATTGCCAGTACATGTGTGTGTGTTCCCAGTTTACCACCTAATCGCTT TTCAAGCAGTGCTTCATAACCGAGTGCATATATGCATTTGTCATTCTCTCACTCCTTAACTTCGCAAAAC CTGATGCTAACAATAGCTACTACCTCGGTCACGCCCCCATAACGACTCTAAACCAGTAACTGACAAAATC AAAGCCATTCGGGGCCCGGGGTAATATAATTCTGGTTTTGTCTAGTGTCATCGCGTTTTGGTCTCATTGG CGTAACCGGGGTATTGTAGTCAAGCAATGTCTGAGTTATAGGTTTTTCTAGACATCTAAAGAACTCATAA ACAGTATGTATATCTATTTCCCCTTTAAGCAGTTGAATAAACTTTCAACTGTTCAACTTAGTACACAATT TAGTACAAATGTCATGCATCCATTGGTTTGAAGTTCAGTAGTATATTGCAATGCTTCAATTACATCGTGA TAAGTGTGTGTGCTTTCATGTTATAGCTTTGACATCAAACTGACATACATATGCATGTTTATTACACTTT CCTTGCTGGGACATATATTGGTTTACGATGTTTTTGGACAATATTATAATTTACTTTCTCAATATTGTGT ACAGATATGGAATCATGCTCTCAAAACTATATTCCCTGTTTACAGCATATTAACTTGGCTCCTTGGTATT TGAGACTTCTTTTGATGATTGTTGATAATTTTCTTGGAGTAATACATTTCTTTTTTTCCCCTGTTACACA TTATCACAGATGTATATCACTGATATCTGATTTTTAAAGATTTTTTATCATCACATGGAAACTATTTATT GATACTAGGATTATGGCAACCTACCATTTTAAATTCAACTTTCATTTTCTTGATAGGAATGATGGAACAA ATTATGTGATGGTTACTGTGATATATTGTGGTTCAAACTGTTTGCAGTAGTCTTATTAAAACTCGAATTC TATCGCCACTATATGTCTATCTTCAGATGCTTCGTTAAGTAGTAGAATCTCCATTGTAAAGTGCACCAAA TATGGTGTAGAATCATTGATGCAGGTATTCTCCCGTTGCAAATATTTGTGATGATATAAACTCACACACT CTCTGTGTGTTTTGTTCTGTTGCTTTCTTGTAAATGGTTCCATTTTAATGTGTGAGTGAGAATATCATAG CCATTCAAATAATGAATAACAACCTGTTCTATCTATGTCAGTAGCAACATTGGAGAGATGACATTTTATA AAGTTATTTTATTATTTGTCAGTTGTAGAACAGAGGAGAACTAACAACCCAATATTGTGGTGTTCGTATT GAGGTTTTTACTTTTATTGAACCATGTACACAAAAAAATAAACATTTTATCGAGTGATGAAAATAGGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds