Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030981662.1 PREDICTED: Strongylocentrotus purpuratus filamin-A (LOC587438), transcript variant X2, mRNA ACACAGAGAGCTAGCACTAGCAGTGAGAGCCTGCAAGTCATACACATAGGAGCTTATATGCTCACTCTTC ATGGGCCATCAAGTTATGTTTACCAAAGTGAAAAATACAACTGCCTTCTATTTTCTATGAAGAAGATATA GACAGATATCTCGTGGTGAACGGGAGAGATATATGTGTCATAGATTTGGAAAACTTCTCTGTTATCTTAT CTGTGTTTTGTGAACTTGGAAAGTTTGTAACAGTGGATTTACACCTGAACAACTTGTAAACTGGAAAGTG TCATTCTGAGATTTGAGGTTTGTGTGCCTTTTAGGAAGTGATCTCTTCAGATCCAGAAAGAGAATATCAA GATTATGAGAAGGGGAAGAGAATAAAGGAGATAATAAAGATGAGGTAAATTGGATAATATACTTAGAGAT ACAGATTTACAGGCAAGGTGTACTGAGAGAGAGAAACAACAAGGTGGTATTCCCAACGTTGCGAGTGAAA TAGGTTTATAAACACTACTAGAAATTAGAATGAATCACATTAAGGAGTCCAGTATGCGCAATGCATACAC ATACAACACAACAGGAGGAGATGTGCTTTACGCCACGCCCGACGATGGATACAATACCAACTCCACCGTA GATGGGTACTACACCGTACCCCAAAAGAGGAGCAGCAGTAGTAGTAGCAGTTACAGCAGCAACAGTAGCA GTCGCTATGGAAACAAACAATACGGGACACAAAACCACGTTGTAGGACAAGCTGTTCAAGACGAAGGGCG ACGAGCAGGAGGAGGAGGAGATGGAAGCAGTATCCATAGCAACAACGGAAGTGTTCACAGCAGCCATAAT AACTATAGTCATCAAAACAGCTACCCTGGCAACCATGTAAATAACAACTATGTAACCCAGGAGACCTCAA GAAGATATCAGACCTGGAATGGCAAACATCATCACTCCAATGGAATCGAAGCGGGTCGTAAACTGAATGT TGATCCCACATTGACAGCGACTGAACTGAGTCAACCTTCTGTGGATGAACTGAACGTGATGGCCTACGCT GCTGGGTTCCACCGGGCTAAACCCGTCTCAGAAACCTTTAAGACTAGCTTTGGAGCTGAGACATACGCAT CTCAGAAGACAACAGATTGGGGATTGTGTTGTAAGATTGATCTCAGTAGATGTACTGGTCTGGATACTAA TCCTAATGGAGAAGTTCATGAAGCTAATACAGAAGTACCGGTGACCATACATGTGAGAGTATTGGATCAG CAGGTCTCGGTGGAAGACATCTCAGCTCAGATTGAGTCTCCTGGTAGCCCCGTCCCGATCAGTCTTAAAG CTCTTAGTACTGAGCTGGTGGAAGTACAGTTCACTCCCCTTGATGGAGGCATGCATAAGGTTTCAGTTAG ATGCCGAGGTGAGATGGTGAGAGGGAGCCCTATCAAGGTCAACGTTGCGAAAGACATGTCTTCTTACCCA AGGAATGTCAAGGTCGGAGGAAATGCATCTGCTTTCATTGGAGAGGAACTTCAGTTCCAAGTTGATACAC AGGAAGCAGGGCAAGGTGATATCAGTGTGGACATCACTAATGGCCACAACCGACTCCCTGTCCGCATCAC GAGGGAAGGGCGTGTCTTCACTGTACATACCAAGGCAAAGGATACAGGCTCCTATGTCGTGGATATCAAG TGGAATGGACAGTCCATAACAGATGACCCAATGAGGATAGCAGTAAGGGATCCTTCCAAGTGCAAAGCAA CAGGGGAGGGTCTATCTAGAGCGAGGGAAGACACACCAGCAATATTCACCGTAGATCCTACACCAGCAGG GCCAGGGGAGCTTAGAGTACAGGTTGAAGGACCAAACTCCATGGCCAAAGTGAGTGTTGATGAGAACAGG GATGGTACATACACAGTGACTTACATACCAGTGGAAGTGGGTATGTTCACACTCAAGATCTTCTGGTCGG ACAAACAAATACCAGGTAGTCCCTATCACATCAAAGTGACTGATCCCAGAAAAGTGAGAGTGGTGAAAAG CAGCATCAAGAATGATCAGACGGTCAACGGTATGCACAAAATGACAAGAAACAAAGAATTCAAGATTGTC TTTGATACAACTGAAGCAGGACCTGGTATGATGCAGGCGGACCTAGACACACCGACCAGCAGGGTACCTC TCAATGTAGAAGCGGAGATGCAAGGCCGACAGAGTGTAACATTCATACCAGATGAACAAGGTGAACATGA GTTGAAGGTGACATGGTCAGGCTTCCCCATAAAAGGATCACCACTCAAGTTATACTCCAAGACAGAAGAG ATTCCAGTGGATCACACTAAGGTGAAGATCAGAGGAGATGGGATGGAGGTCGGAAAAGTCTTCAAGAAGA CTGAGTTCCTCATCGATGGATCTACCGCTGGACCAGGTAACCCAAGCGTAAGAATGAGTGGTCTAGATGA AGATATAGATGTCACCCTCACACGCCTTGAGAACCACAAATATCGTGCAACCTACACACCAGAAAAACCT GGTACCTATCTGCTTCACCTGGCCTGGTCTGACAGGCAGGTTAATGGATCACCTTTCAAAGTGAACATAG CAGGAGAATCTCATGCTAATCGGGTGAAGGCATCCGGAGCAGCCTTAGGAATGCTTGTCGCTCATAACAC ATCAAGACTCGTAATCGATGGACGAGAAGCAGGAGCTGGTGATCTCACGGCTCGTTGCATGGGTCCTGCT CAATTGGCTGAGGTACACATTGGTAATAACCAAGATAACACATTCTCTCTGCTCATCACACCTAAGGAAC AAGGTAAACACGTTCTTGAGGTCAAATACGGATCAGATCATATCCAAGGAAGCCCATTTGTGTTGCGGGT TGCTGGTGCCCCTGACGCCAGCCAGGTGGTGTGTCATGGGTTTGGTCTAGAGCATGGTATCCTAACCAAG TTCAGAGGAAGGTTTGTTTGTGAGACTAAGGGAGCTGGATCAGGTCAACTCAAGGTCAGAGTTCATGGCC CCAAAGGTGCGTTCCGCGTTGAAATGAAACGTAACGACACGCGTGATCGTACCATTGATGTTCTGTACAA CCCAAGTGAAGTCGGGGATTACACAATCCACGTGAAATGGTCCGACAAACATGTTCCAGGAAGTCCGTTC CTTATTAAGATCGTTGATAATGAAGAACAGCTGAGAGATGTCCAGGAGAAGTTCCCTACATACTCTACCA GGGCACGCTACGGAGGACGGGAAAATGGATGGGCGGAAGATATCTAAACAAAGCTGCATTTACTTCCTAA ATCTTATATTACTCCAGGGCCCCTTGTTACAAGCTTGTCATCAGTGACAAATGACAGTTCTTGTTATAAG CTTAGTGAAATCCTTGCTTCTGATTGGTTATCAGCAGACTTGTCACTGAGTTTTGTCATTTGTCATTGAA AAAAGGCTTTGTGAAACAGGTCCCAGAATTTTACTTTCAAAACTCTAGAAATAATTGTATATACACCCCA AAAATTGTCATTGTGACTGAGTGAAAATTTACATATGGACCAAAATGTACTATATATCTAACACTGTGAC ACTTAGAAGAAATGAATCAATGAAAGTTTGTAAAAATTGAAATATTCCAAACAACCATATTCTTGGCACC AAGTTTGCAAATTCTAAAGCCTCTGTATTAAAAGTGGTCATATTTTCACATCTTTTCTGCTTGTAAAAAT GCTTTTATAAGATGTAACACTACAATTAGCTATTGAATAGAGGAATCAGTGTTAAGAATGATATAATCTC ATGTTTGTATTCAACTTGCCATATTATAAAAACTAATATATTTGTGATAGTCTGATAAATTATTTTATAT TTTCCTGATAGGGAAAGTCCTGGGCACTTGAAACTAACCAAGTACATCCCCTTGGCAATGATAATACTTG GTTTTAACAGTATGAAGATTTATAGCTATTCTTGATAAGACTCATTTATACTAAAATCAGGTCAAATAGA CTAAATAAAATCTGAGCACGGCTTAGCCTTCACAACTACACGTATTGACAAGAATGTCAAAAGGGAACTT GCTTTGACAATTTTCATTGTAAATTTCATTAGAATGCCCAGACTTATCTTTTTAAGCAAATATAACAATG TGTATATTAATAACATCATGATGATATCTAACTAGTAACTACCTTGTAACTACCTTGTAAATGTATATCT AATGTATGTAATCACATGGTAACATTTCTTAATTTATTGTAATGTAAGTATAAAGCTGTGATATTATGAT GCTTTTGGTATACCTGTGGTTCAAGTAAAACCTATGTAAATAGTGTATAATTTGTACCGGTACTCAATAT GGTATTGACAACACTTACAATGAAATTGGACAAGATGAAGTGTATATTTAATATGTACATGTATGCTAAT AAGTTGACTTTACTCAAATATTGTATTCAACATTTATAATTTGTTTCATGGTTGATGTATTCATAATAGT GTATTTCGATTCCTATTACTGCTCATTTATTCTTATAAAATGGGAAGAAGTTTGGTCTATGGTGAGGTAC AATAAAAAGGTTCAGAGCTTTGTAAAGTATGAAAATATACTGCTGAGAACATTATTTTAAAAAATGTCCA TAGCTAAAATGTTTACTACTGAACAAGTTTAAGTCACAAAGGTATATGTAGTTTGACCTCACATTTACAT CTGATGGAGATGATCTGAAGTTTTGGGGTAGTTAGAACTTCAGCAGAGATATTTGCATGACAGAAAGGAT TTAATTGCTTGTACCAGACAGCACATGTTTAAGCTTCAAGAGACTGAAGTTATGCTGGACCAAACAATAT AGTCTTGGGATCCTTATAAATAGTTGCTGAAAGGTCTACATGTACTTTAGGGGGGCGTTTCACAAAACTT GTCATCAGTGACAAACGACAGTTTTTGTTATAAGCTACTGAAATCCTTGTTTCTGATTGGTTATCAGCAG ATTTGTCACTGATTTTTGTCATTTGTCATTTGTCATTGAAAAAGGGCTTTGTGAAACGGGCCCCAGATGA ATCTTAAACAAACCTTTTTAATCTTTTAAGAAAGACTTTGTCAATCACTTTCACACACAAAAACAAATCA ACCCGGAGTGCCATTAGAAGAAACATTTAATATACACTTTCTCTCAATTTTAGTACAGTAAATATCTGGC TATAACTTATTCAGAAAAGTAAACTACATCACATGGAATATACGTGTACTAGATTTGCTTCTTGAAAATT TCCTTTCCCTAGAAATATTTCACTTTAATATCCTTGTTTTCTTGGCTACAATTTGGCCTATGTTACTGAT TCAACGTTTGAATACTTTAAATGTTAAGTTATTGTACAATTCATAATACAAATGGCAAATTTGCCCGATG GATACATTTTGATCGAGCTCTTGTCTATAGCTAATGTACTCAAATAAGACCTGCTGCTGTATATATATTT CATCATTTATAATGTTTTTACATGATACTCATATCAGAATTCTGTAAGCAAAGGAGAGTTTCATTGCTCC AAGGCCAAGGCTAAACAATCCCCTCACAGGCTAGGCTAGATATGGTTCACACATAAAACACAATGATCAA CATGCAAAGCTAATATTTCTCATAAAAGATGAACTTGTGATTATTCAATTATAATGGAAGCATTAATACC TCTGTTTTATTTCATGTTTATATGGAATACTTGATGGCTTAGCGTTATCAATTTTATAAAATCAAAAATA TTATTATTCAATTATAATGGAAGTAAAAATGTTCATATTAATACACGTACCTCTGTTTTATTTAATTTTT AATATACAGGTAAGTCTTGATGGCTTAGCATAATCAACTTTATCAAATTAAACTTATGATTACTCAACTA TAATGGAAGTAATAATGTTCATATTCATACCTATTTTTTATTTCATTTTTATGTAAGTCTTGATGGTTAA GTGTTATCAATTTTATCAAATTAAACTTGATTATTCAATCATAATGAAAGTAGAATACTTCGTATTAATA CCTCTGTTTTATTTTATTTTTTATGTTAGTCCTGATGGCTTAGCATTTTAAATTTTACTTTTGTACCATA CACACTACAATTAGTTATTATATTGAATTATAAATCATTTACCGAAAGTACAATGTATAGTTCAACTCTG AGATGTTTCACTAGTTCCTAATCAGTTACTGGACGTAAGTTGAACTATTGTAGGAACTGAAGAAACATCG CAGAGAAGTAAGTTGAACTATACATTGCACTTCTTGTAACTGATTTACACTTTGCTATAATTTTGACAAT ACTGGATGAATCTTAATCTTCATCAAATTCTGATTAGTTGTTGAGGACATTTTTATATGGGTTTGAATAT GGATATGTTCAGTTTTCAACAGTTTATACATGTATGACATAAAATATCTCCCTTTGTTTTTCTCTCACAT TTTTAGCTTGGTAAAGATAGTGGTTTATACAATGTATATACATGTAACATGAGATAATATAACTTCATTC TTTCATCTCTCCCTCTCTCTGTCTCTATTTGTCTATCTATCTACATGTATCTTTATACATCTATCTACCT CCCCCTCCCCCCCCCCCCTCTCTTTTTCTCTCTCTCTCACTTTCTCTGTCTCCATCTTTCTTATTCAAAT GATGTATTAGGGTATAACTGGTTGAATAGTTTAAATTGCATGTACAAAGGGGCTTTTTATTATTCAAATT AGAACATAATTGCAATATAGTTTTTTGAGTAGAATAAAATGTGATAATAAAATACTTTGAAATATATTAT GCAGCTAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds