Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030981663.1 PREDICTED: Strongylocentrotus purpuratus filamin-A (LOC587438), transcript variant X3, mRNA ACACAGAGAGCTAGCACTAGCAGTGAGAGCCTGCAAGTCATACACATAGGAGCTTATATGCTCACTCTTC ATGGGCCATCAAGTTATGTTTACCAAAGTGAAAAATACAACTGCCTTCTATTTTCTATGAAGAAGATATA GACAGATATCTCGTGGTGAACGGGAGAGATATATGTGTCATAGATTTGGAAAACTTCTCTGTTATCTTAT CTGTGTTTTGTGAACTTGGAAAGTTTGTAACAGTGGATTTACACCTGAACAACTTGTAAACTGGAAAGTG TCATTCTGAGATTTGAGGTTTGTGTGCCTTTTAGGAAGTGATCTCTTCAGATCCAGAAAGAGAATATCAA GATTATGAGAAGGGGAAGAGAATAAAGGAGATAATAAAGATGAGATTTACAGGCAAGGTGTACTGAGAGA GAGAAACAACAAGGTGGTATTCCCAACGTTGCGAGTGAAATAGGTTTATAAACACTACTAGAAATTAGAA TGAATCACATTAAGGAGTCCAGTATGCGCAATGCATACACATACAACACAACAGGAGGAGATGTGCTTTA CGCCACGCCCGACGATGGATACAATACCAACTCCACCGTAGATGGGTACTACACCGTACCCCAAAAGAGG AGCAGCAGTAGTAGTAGCAGTTACAGCAGCAACAGTAGCAGTCGCTATGGAAACAAACAATACGGGACAC AAAACCACGTTGTAGGACAAGCTGTTCAAGACGAAGGGCGACGAGCAGGAGGAGGAGGAGATGGAAGCAG TATCCATAGCAACAACGGAAGTGTTCACAGCAGCCATAATAACTATAGTCATCAAAACAGCTACCCTGGC AACCATGTAAATAACAACTATGTAACCCAGGAGACCTCAAGAAGATATCAGACCTGGAATGGCAAACATC ATCACTCCAATGGAATCGAAGCGGGTCGTAAACTGAATGTTGATCCCACATTGACAGCGACTGAACTGAG TCAACCTTCTGTGGATGAACTGAACGTGATGGCCTACGCTGCTGGGTTCCACCGGGCTAAACCCGTCTCA GAAACCTTTAAGACTAGCTTTGGAGCTGAGACATACGCATCTCAGAAGACAACAGATTGGGGATTGTGTT GTAAGATTGATCTCAGTAGATGTACTGGTCTGGATACTAATCCTAATGGAGAAGTTCATGAAGCTAATAC AGAAGTACCGGTGACCATACATGTGAGAGTATTGGATCAGCAGGTCTCGGTGGAAGACATCTCAGCTCAG ATTGAGTCTCCTGGTAGCCCCGTCCCGATCAGTCTTAAAGCTCTTAGTACTGAGCTGGTGGAAGTACAGT TCACTCCCCTTGATGGAGGCATGCATAAGGTTTCAGTTAGATGCCGAGGTGAGATGGTGAGAGGGAGCCC TATCAAGGTCAACGTTGCGAAAGACATGTCTTCTTACCCAAGGAATGTCAAGGTCGGAGGAAATGCATCT GCTTTCATTGGAGAGGAACTTCAGTTCCAAGTTGATACACAGGAAGCAGGGCAAGGTGATATCAGTGTGG ACATCACTAATGGCCACAACCGACTCCCTGTCCGCATCACGAGGGAAGGGCGTGTCTTCACTGTACATAC CAAGGCAAAGGATACAGGCTCCTATGTCGTGGATATCAAGTGGAATGGACAGTCCATAACAGATGACCCA ATGAGGATAGCAGTAAGGGATCCTTCCAAGTGCAAAGCAACAGGGGAGGGTCTATCTAGAGCGAGGGAAG ACACACCAGCAATATTCACCGTAGATCCTACACCAGCAGGGCCAGGGGAGCTTAGAGTACAGGTTGAAGG ACCAAACTCCATGGCCAAAGTGAGTGTTGATGAGAACAGGGATGGTACATACACAGTGACTTACATACCA GTGGAAGTGGGTATGTTCACACTCAAGATCTTCTGGTCGGACAAACAAATACCAGGTAGTCCCTATCACA TCAAAGTGACTGATCCCAGAAAAGTGAGAGTGGTGAAAAGCAGCATCAAGAATGATCAGACGGTCAACGG TATGCACAAAATGACAAGAAACAAAGAATTCAAGATTGTCTTTGATACAACTGAAGCAGGACCTGGTATG ATGCAGGCGGACCTAGACACACCGACCAGCAGGGTACCTCTCAATGTAGAAGCGGAGATGCAAGGCCGAC AGAGTGTAACATTCATACCAGATGAACAAGGTGAACATGAGTTGAAGGTGACATGGTCAGGCTTCCCCAT AAAAGGATCACCACTCAAGTTATACTCCAAGACAGAAGAGATTCCAGTGGATCACACTAAGGTGAAGATC AGAGGAGATGGGATGGAGGTCGGAAAAGTCTTCAAGAAGACTGAGTTCCTCATCGATGGATCTACCGCTG GACCAGGTAACCCAAGCGTAAGAATGAGTGGTCTAGATGAAGATATAGATGTCACCCTCACACGCCTTGA GAACCACAAATATCGTGCAACCTACACACCAGAAAAACCTGGTACCTATCTGCTTCACCTGGCCTGGTCT GACAGGCAGGTTAATGGATCACCTTTCAAAGTGAACATAGCAGGAGAATCTCATGCTAATCGGGTGAAGG CATCCGGAGCAGCCTTAGGAATGCTTGTCGCTCATAACACATCAAGACTCGTAATCGATGGACGAGAAGC AGGAGCTGGTGATCTCACGGCTCGTTGCATGGGTCCTGCTCAATTGGCTGAGGTACACATTGGTAATAAC CAAGATAACACATTCTCTCTGCTCATCACACCTAAGGAACAAGGTAAACACGTTCTTGAGGTCAAATACG GATCAGATCATATCCAAGGAAGCCCATTTGTGTTGCGGGTTGCTGGTGCCCCTGACGCCAGCCAGGTGGT GTGTCATGGGTTTGGTCTAGAGCATGGTATCCTAACCAAGTTCAGAGGAAGGTTTGTTTGTGAGACTAAG GGAGCTGGATCAGGTCAACTCAAGGTCAGAGTTCATGGCCCCAAAGGTGCGTTCCGCGTTGAAATGAAAC GTAACGACACGCGTGATCGTACCATTGATGTTCTGTACAACCCAAGTGAAGTCGGGGATTACACAATCCA CGTGAAATGGTCCGACAAACATGTTCCAGGAAGTCCGTTCCTTATTAAGATCGTTGATAATGAAGAACAG CTGAGAGATGTCCAGGAGAAGTTCCCTACATACTCTACCAGGGCACGCTACGGAGGACGGGAAAATGGAT GGGCGGAAGATATCTAAACAAAGCTGCATTTACTTCCTAAATCTTATATTACTCCAGGGCCCCTTGTTAC AAGCTTGTCATCAGTGACAAATGACAGTTCTTGTTATAAGCTTAGTGAAATCCTTGCTTCTGATTGGTTA TCAGCAGACTTGTCACTGAGTTTTGTCATTTGTCATTGAAAAAAGGCTTTGTGAAACAGGTCCCAGAATT TTACTTTCAAAACTCTAGAAATAATTGTATATACACCCCAAAAATTGTCATTGTGACTGAGTGAAAATTT ACATATGGACCAAAATGTACTATATATCTAACACTGTGACACTTAGAAGAAATGAATCAATGAAAGTTTG TAAAAATTGAAATATTCCAAACAACCATATTCTTGGCACCAAGTTTGCAAATTCTAAAGCCTCTGTATTA AAAGTGGTCATATTTTCACATCTTTTCTGCTTGTAAAAATGCTTTTATAAGATGTAACACTACAATTAGC TATTGAATAGAGGAATCAGTGTTAAGAATGATATAATCTCATGTTTGTATTCAACTTGCCATATTATAAA AACTAATATATTTGTGATAGTCTGATAAATTATTTTATATTTTCCTGATAGGGAAAGTCCTGGGCACTTG AAACTAACCAAGTACATCCCCTTGGCAATGATAATACTTGGTTTTAACAGTATGAAGATTTATAGCTATT CTTGATAAGACTCATTTATACTAAAATCAGGTCAAATAGACTAAATAAAATCTGAGCACGGCTTAGCCTT CACAACTACACGTATTGACAAGAATGTCAAAAGGGAACTTGCTTTGACAATTTTCATTGTAAATTTCATT AGAATGCCCAGACTTATCTTTTTAAGCAAATATAACAATGTGTATATTAATAACATCATGATGATATCTA ACTAGTAACTACCTTGTAACTACCTTGTAAATGTATATCTAATGTATGTAATCACATGGTAACATTTCTT AATTTATTGTAATGTAAGTATAAAGCTGTGATATTATGATGCTTTTGGTATACCTGTGGTTCAAGTAAAA CCTATGTAAATAGTGTATAATTTGTACCGGTACTCAATATGGTATTGACAACACTTACAATGAAATTGGA CAAGATGAAGTGTATATTTAATATGTACATGTATGCTAATAAGTTGACTTTACTCAAATATTGTATTCAA CATTTATAATTTGTTTCATGGTTGATGTATTCATAATAGTGTATTTCGATTCCTATTACTGCTCATTTAT TCTTATAAAATGGGAAGAAGTTTGGTCTATGGTGAGGTACAATAAAAAGGTTCAGAGCTTTGTAAAGTAT GAAAATATACTGCTGAGAACATTATTTTAAAAAATGTCCATAGCTAAAATGTTTACTACTGAACAAGTTT AAGTCACAAAGGTATATGTAGTTTGACCTCACATTTACATCTGATGGAGATGATCTGAAGTTTTGGGGTA GTTAGAACTTCAGCAGAGATATTTGCATGACAGAAAGGATTTAATTGCTTGTACCAGACAGCACATGTTT AAGCTTCAAGAGACTGAAGTTATGCTGGACCAAACAATATAGTCTTGGGATCCTTATAAATAGTTGCTGA AAGGTCTACATGTACTTTAGGGGGGCGTTTCACAAAACTTGTCATCAGTGACAAACGACAGTTTTTGTTA TAAGCTACTGAAATCCTTGTTTCTGATTGGTTATCAGCAGATTTGTCACTGATTTTTGTCATTTGTCATT TGTCATTGAAAAAGGGCTTTGTGAAACGGGCCCCAGATGAATCTTAAACAAACCTTTTTAATCTTTTAAG AAAGACTTTGTCAATCACTTTCACACACAAAAACAAATCAACCCGGAGTGCCATTAGAAGAAACATTTAA TATACACTTTCTCTCAATTTTAGTACAGTAAATATCTGGCTATAACTTATTCAGAAAAGTAAACTACATC ACATGGAATATACGTGTACTAGATTTGCTTCTTGAAAATTTCCTTTCCCTAGAAATATTTCACTTTAATA TCCTTGTTTTCTTGGCTACAATTTGGCCTATGTTACTGATTCAACGTTTGAATACTTTAAATGTTAAGTT ATTGTACAATTCATAATACAAATGGCAAATTTGCCCGATGGATACATTTTGATCGAGCTCTTGTCTATAG CTAATGTACTCAAATAAGACCTGCTGCTGTATATATATTTCATCATTTATAATGTTTTTACATGATACTC ATATCAGAATTCTGTAAGCAAAGGAGAGTTTCATTGCTCCAAGGCCAAGGCTAAACAATCCCCTCACAGG CTAGGCTAGATATGGTTCACACATAAAACACAATGATCAACATGCAAAGCTAATATTTCTCATAAAAGAT GAACTTGTGATTATTCAATTATAATGGAAGCATTAATACCTCTGTTTTATTTCATGTTTATATGGAATAC TTGATGGCTTAGCGTTATCAATTTTATAAAATCAAAAATATTATTATTCAATTATAATGGAAGTAAAAAT GTTCATATTAATACACGTACCTCTGTTTTATTTAATTTTTAATATACAGGTAAGTCTTGATGGCTTAGCA TAATCAACTTTATCAAATTAAACTTATGATTACTCAACTATAATGGAAGTAATAATGTTCATATTCATAC CTATTTTTTATTTCATTTTTATGTAAGTCTTGATGGTTAAGTGTTATCAATTTTATCAAATTAAACTTGA TTATTCAATCATAATGAAAGTAGAATACTTCGTATTAATACCTCTGTTTTATTTTATTTTTTATGTTAGT CCTGATGGCTTAGCATTTTAAATTTTACTTTTGTACCATACACACTACAATTAGTTATTATATTGAATTA TAAATCATTTACCGAAAGTACAATGTATAGTTCAACTCTGAGATGTTTCACTAGTTCCTAATCAGTTACT GGACGTAAGTTGAACTATTGTAGGAACTGAAGAAACATCGCAGAGAAGTAAGTTGAACTATACATTGCAC TTCTTGTAACTGATTTACACTTTGCTATAATTTTGACAATACTGGATGAATCTTAATCTTCATCAAATTC TGATTAGTTGTTGAGGACATTTTTATATGGGTTTGAATATGGATATGTTCAGTTTTCAACAGTTTATACA TGTATGACATAAAATATCTCCCTTTGTTTTTCTCTCACATTTTTAGCTTGGTAAAGATAGTGGTTTATAC AATGTATATACATGTAACATGAGATAATATAACTTCATTCTTTCATCTCTCCCTCTCTCTGTCTCTATTT GTCTATCTATCTACATGTATCTTTATACATCTATCTACCTCCCCCTCCCCCCCCCCCCTCTCTTTTTCTC TCTCTCTCACTTTCTCTGTCTCCATCTTTCTTATTCAAATGATGTATTAGGGTATAACTGGTTGAATAGT TTAAATTGCATGTACAAAGGGGCTTTTTATTATTCAAATTAGAACATAATTGCAATATAGTTTTTTGAGT AGAATAAAATGTGATAATAAAATACTTTGAAATATATTATGCAGCTAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds