Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041626971.1 PREDICTED: Lytechinus variegatus MLX-interacting protein-like (LOC121429763), transcript variant X5, mRNA GCCATCTTCATGGCGGACTCCGGTGTGGACATGACCATCCTGCATGTGCATCCGCACTATTTTGTGGAAA TTATCATCAAAACGGAACCATTATGACAAAGCGAGATGGCTGTCCTCTTGACAAAATGACTAAAATGGAT CAGATCGAGAATTGTGAGACGAAATTGCTGCAAAGGACAGAAAATTGTAATGAAAATGCCAACAATTCGG ACGTGCGTGTCCATAGTCCGGGCAAGAGCACGGGGACGAGACAATCGAGCAGCGGGAGCTTTAGTGAGTT CTCAGCCAGCAGTTTCCGCGATTCTCCCCGATCTGCACCGAGCTCCTTGCCTGGTTCACGATGCGGTTCC ACTCCTGGGTCGAGACTGGCGTCAAGGTCAAACAGCCAGGAATCTATCATCGACCTATTTGATTCAATGA CCCTGCAGTTTGGTCAAACAATAAGTGAAGGAACTGGACAAGGTATTCATCTGTTCTCCCCGAAGCCACG CCCCTTGCGTCATCCGAAATGGAGTTGGCAGGAGAGAGTGAGGATCAACCATGCCATTTGGAGGAGCTGG CACATGCAATATGTGAAAGGAAAAAAGCCAGTTATCTGTCAGTTCTCCGCTCCCGCTCCAGATTCAAGAC CGAGATTGCAGGCTGATGTTATCCAGGGGAGACCCATCAATAAGCAATGGAATCCATCTCAGCTTGGCTC GGCTGTCAGGGACTATCACAAATGGAGGGTCTTCGGCAGGGATTTGTTCATGGGGGAAAGTGCCCAAAGG ACAGTGGAAGACCATGCCATCAACCTGGACATGCCCCACCCTCCCCTCTCCCCGATGTCGGCTCAGAAGC TGATGAACGATGACACCCTCAAAGACTTCTCAGACACCCTCTTTATCAGCACAGAGAGGAAGAACTTCAC CGTCCCTGCACCCAGGAAGATCACTCGCCATGTATACAACAGTGATATCATACAGCCCGGACTTATGCAG CTGGAGCCTGATTTTGATGAAGATTTCATGGAAACCCTGGATTCTCTTCAAGATATCTTGGCAAAGACTC CTACCAAACAAGACACGGATAGCCTGGGGATGAACTACAGTCTACCACCAAACTTCCTCTCCGACACCTC TATAGGTTCACTGAGCGAAGCCATGGAGATTACAGACCCGACCAAGTCTTTGCTGAATGCCTATCCCATC GCCATCATTGGAAGCAGTGGCAACAACAGCAAGCAAGTGCTCAACCAACGCAGTGTGACCTTTGCAACGG CCCCACCCACCATCGTCTCCTGCCAGTATGACCCTATGGTCAGCAGCGTACCCCTATCAGACTTCTCCCA GTCACACCTTAACCAGACCTACAGCCAAGCTGCAGGACAAGTGTCTTCAGGTCAAGTGTCTGGGCAGGCT CCCAGACAGATCCAGGGACAGAGCCCTAGTCAGTCTTCTGCCGGTAGGAGAAACATGCAACTGCCAGACC TTTCCAAGGGCCACATTCCAATGCAGGGCGTGACTTGCAGTGTCAGCAGTAGAGGGCAGCATTCCAGCCA GCAGTCCATGCCAATGGCATCGTTGTCCTATCAACAACCCAACACTTCTTCTCATCTAACCACCTCACTG GCAAGTAACCAGGTCTATCCCTCTTCTCACACCAAACTTGGAGCACAAAGCCCTACTCCAACATCTCCCC CAGCTTGCATCCAGAATGTACCAATGAACCAAGGTCCCAATGCAACAACGATGGGTGTCATAAACGAAGC TATCGACCTCCTGTCCAGTCAGATGACCTCTTCCCCGTCCAAGATCCTCCCAGACTGGACCACACAGTAC AGCCATCCCATGAGCACGACGTCCTGGGCACCAACTAGCCAAAGTAATGTGGACATTACTGAACAGCTGA AGACGTCCCTTTCTGATGCAACGTTTCTAACCTACCAGCAGATACAGACAGATCTCAGCTGCACCATGGA CCCGATGGCCCAAATGGACCAGAGTACGGTCTTGGGTCATAGTTTGTATGGCGGAAACATGTCGTCAGGG CAACCACATCAACATCATCAGCAACAACATCAGGTGCCATCACCCGGGCAGCCGCATCAGGTCCCGTCGC CCAAACAGTATTCCGTAGCGTCCCCGCAACAGCATTCCGTTGCATCCCCCCAGTATTCAGTGCCATCCCC GCAGCAACATTCGATAGTGTCTCCGCAATCGCATCAAGTGGCATCTCCGCAGCCCCAGGAAGAGCTGATG GACTTCGAGCAGTATTCTGCCTTGAATGTTGTGGGAGTGTCCGGACTGAATGCCTATCGCCAGCCTAAAA GAGAAGTCACCCATAGCAGCCAGACCAACAGTCGGAGTAACAGCAAAGCCAACAGCCGAGCCAACAGTCG TCCTAGCAGCCGCCCCAGCAGCCGGGGCAACAGCAGGGCTAGCAGTAGGGCTAATAGCCCCAGGGCTAGT TATGCTGGTTTGCCGGGCCACTTCCAGGACTCTCTCCAGGCTGCACTGCAAGGGAAGTCTGAAGTGAAAG AGCCTGGCTTGTTGCGTAGTCCCTCCACCGACCGTGATCTCACCATATCAGTCCCGTCATCCTGCCAGGC CTCCGCCGCATCTAGTGCGGCTTCATCGCCTGGCAGCCAGATAGAGTATCCCGAAACTCCCACCAGTATG CGAGAGTTCGAGTTCCATGCACCCAGAGCCAAGAAGCAGAAGACACCCGAGTCAGGATCAAAGGACAAGG AGGCTCGTCGGAGGATAAAGCACATCCACTCTGAGCATAAAAGACGGTACCACATCCAGACAGGATTGGA TGAGATACAGAGTTTAATACCCGGGATGAATAACGGCGGCAGTGATAACGCCTCCAAGATAAGCACAGCA ACAATGTTACAGAAAGCCCATGAATACATCCAACATCTAAAGGAAGAGACCAATAACCTTCGAAAAGAAG TGGACAGAACGAGAGAGGAGATCCAGAAAGTCAACGATGAAATATGTGAATGTCAGGACAGTCTACCTGA TACCGGAGCACCAGTCAACTCACAGAGCGAGAGACAGCTCCAGCAGATGTGCAATGAATATATTAATCAA CAAATGCAAGATAACTGGAAGTGGTGGATTTTCAGTATGATAGCTAAACCACTGTTCGTCTCGTACGTTG CCGCAGTGTGCACCAATCCAGGGGCAAACTTTGATGAAGAAGTTGTAGACTGGGTTGAGGAAAGTTGTCG ACTCAAGCCACTTAGAAAATTGGTATACACTATTGTCAGGCAAGTCAGCACCCGGACCTCGGTCCTTCAA AATCCCGTCCAGCTGCCGCAGGAAGTGCGCGAGATCATCAAGAAGGAGATCGAGAATCCCTCTTCGGAAC ACTCATGATATTAACTACCCACGTAGCTTTAGTGCTAGATAGACTTAATATATGCTACTAAACCATTGCA TGCTGGAAGAGAGTGATCCCTGTATAAAGCCTATGGGAATCCAAGGATTCAGTTGTCAACGGGTTATAAT TCCATGTCAGGTGGGTGTTTCATAAAGCTGTTCGTAAGTTAAGAGCGACTTTAAGAATGACTGGTAATCC TTTCTTCTGGTATGTGGTATATCCATTGGAGATGGTTAAGCGCATAAGAAAGGATCACCAGTCGTTCTTA AAATCGCTCTTAACTTATGAACAGCTTTACGAAACGGCCCCCGGGTTCTTCCTCTTTGCAATGCCTGTAC ACCACAAGGAGGGAGAGCTATATATTTTGTGCCACGAGAGGGTGCTAGACTTTATAAAAAAGAAATGCTG CAGCCAGAAAAGAATGGAGACGATGCTTGAGTGATTTTTTTTTTTGCATAGTATGGCAGATGAACCTTTT CATTCTGTATCCGTGAGATGAACCCAAAGAGATTGGTGATCCTTTTTATCGATGATTGATGAACTTCCGC AGTGACACTACATTGGAAATTACATTCTGAGATATGATCATCATTGAGAGAGCACAAATATATTTTCTAA TCTATGCCTCTTGCATGTACACAGCAGGAGGGTGATCTACCTTGAGTCTCTTCATCTCGTGTTCTATCAT CGTTGAATAGGGAAGTTAAGCAGTTATTACCTAAGTAAAATTTTGAGAAGAAATAATAACATATGGAATG CATATGATCTTATCGTGAAGTATTTCCATTGGATGTGGTATTTGTTTAATTCCGTTGTGGATGGATATGA TCATCAGTCACGTAATTGGGAAAATTTATTTCAAAACAACGATGAAAAGATGATGGGGCTGGATCATCAT GCTGGCTTTCCTTTTGTTTTTGGTCTTATCTCATAATAAATAACCCATGTTGTATTGATGGATAATAGAT GATTATGAGAAGTTAAAATTTTGTTTGGAAAAAAATACAAAATAACGACCTGTGGTAATTCATGCTCTTC AAATCACTATTATTACTGAATCTCTTCCTGATCAACCTACCATAATCTTTACTAGGGCTGCACAAGACGA CGTTAAAAAATTACTGTGACATTATATTCTTGAAAAGAATTCACTTCAATTCCACTGCATAGGAGCCCAA AGTTTAACATTGTACCCAAATATTGCATACATATAAAAGGTACAAACCCATCGTGCATTTATTATAGGTA AATAGCTAGTGAATAGACGATATCATGTCCAAGATCACCTGCGTCAAGTAAATAATTGAGGTTCTAATAC AGGTATGTTTCAGACAAGATATTTGCCTTGAGTTTGAGAGAATCTTAGAGCCCTTACCCAAATCTAACCT GTCAGGGTCCAAGGGGGTGGAAGTAAAAGCAACAACGCTAACTGATTTTTTTACCTCATCTATACTCTTG TGACTTTTCTTACAAAGAGTTGCAATAGATCAACTCTAATTCAGATTTTTGTTTTGTTTTGATTTTCAGC TTAATTTCAGTGTATTTTTGGCTTTCCTTTGTACAAAAAGTATGGGAGCTCTTTCTATTTTAGACTTTTT CGACACTTTTCAGTTTTTTCAGGTCTTTTTATTGTGACCACTCACACCCCTGGAAATGAAAATGTGCGCA AAGACAAAAATTCCCCTGTTTGTGAAGTAAATCAAATGCAAGTGATTACATGGTAGTTGCACTGTGTCAG TACCATTGCCAGTGAAATATCTATGTTTATGAAAGATGAATGCGGGTACAACATCTCTTAAAGAAATCTT GAAGTTGCCAATTTAAGGAATTCAAAAAGTAATGATTTTGTCAGTAAGTTACAGCAGATCTTCCCTTCTG TTGTATTTGCCAAAGCTCCTTTCCTCGGTCAAATCTTATCACAGCTTTGCACTTCCATGCCTTTTTATCG TTATTACAGTGAATGTTATGAACAAGGTTGCACCTTTCTTCTTTTCCCCATATTAAAGTGGAAAGAAAAA GATCACTTTCAAACTATTCCCTCAGTATTTATCGCACGAGAGATGTGCATTATTCCTTGGGATAACTTGT GCTTCTACGAAAAACCAAAGATCGTCAGCTTGACCGGGATCATGTTTAGTTTATCTGTGCTATTAAATGC TGCAGTCTGATCTTTGTCGTTCGTAGGATTTTATCATAATGTACAGTTGCATGCAAAATCTATGATGAAA AAAAAGTGAGGGAGAGAGTTATATTTCCAAGTACTATATATTTTGGAGAAATAAAGGAGTGGAGATATAG ATATATATGTATATATATATATTCGTTGGTCATGTATGTAGTACATGTTTGCCTGTGTGTGTGTGTTTGG ATGGCTGCGCATGTACGCTGTGTAGTGATGAGTGATGGTTCTTTTGTGTGGAAATCATCATTTGTGTATC TTGTGCAAGCTTGTGTATTCACAGTGTTTTGTTTAAATCCGTTCACTTTCAACATTCTGAAATCTTAATG CACATTTGATAGAATATACCAAGTTTCGGCAGGGAAGGGGTTAATGTGATTTCATTTGTCAAGAGCCAGA TGGGACATTTGACAGCCTTCGAAAATGATTTATTTTGGACAGTCATTCCTCTCATTTCTCCTCGAATTTA TGGCTTCACCTACTACAGTAAATCTATCTGTAGTCATTTCCAGTTATGATAATGATAATCATCTGCAACA TACTATTATTTCTGGCTTTAGCTTAATTTAGACCCCCTCCTCTCCCTGAGATGTTAAAACAATTGTAAAG GAAACAGATTTTTTTTTTTTGCTGAAAATTTGTTATGTTGTATTTTAGTTTGTTCAATTATACAATTTTT TTTTTTTTGGGGGGGGGGGGGTTAATTCCCCTAAATTTAAGTGTCTAGATGCCAAATCTTTACCAAAAAG TTGATGGAAAGTATTTTGAACATTACTGTTTACAAAACAATGTCAAACTTAGTAATTCTTTTGTAAATTA TTATATTGGTTTCTGATTTATTTCGTTGTTCTATATTCTTTTACATTGGTTTTATGACTGAATGTGTTAT AGAATTTAATGTTGCTCAAATTTAAATGAGAATGTCGAGTCCAATGGCTTGAAATATAAAATTTACAGTG TTTCGTGCAATTTATGAAAATCAGTATTTTTCTTTCATTGGTGCACAAATTCCAGAAAGAAAAAATGGAA AGAGATTCTTAATCTGACATGCCATTTCAAAATGAGCTTTGACCTTGTGATGGCTCCTTGTCCAATTTCC CATAAAGATGCAGTAAAAGGGGAAAGAAAATCATGAAACAATAACTTTGGATCAGCTGCCTTTTCGGAGT CTGACAATAACATGACATTCCCCCCAGCGAACTAAGAGTTTACTGTACATGTACATGAAATGTTTAGACC TGGTCTCACAGTGTCAGTTCTGCTTGTTTTTGTTTTTAAATTATTTTGCTGCATTTACTTTTTATTGTCT TGTGAACATGGCATACTTTGTTGCAGAGTGACCAACGTATACTTTATTTGTCCTCTCTTTTGCCGTTGCA GTGCTATTTATGTGTTGTCATTCACATTACGCCTTTTCTTTACCTGAGCCTGTATCATGAAGCTTAGTGA TTGATCGTAAGGCTGATGTTTGCAGTTGATCGTACACAATAGTCAATGCAATCAGTAATTGAAGTCGAGC CCCACGATCAGTCACTGCGCCTGATGATACAGGACCCCGTTTTGTATTTTGCTGGTGTCTTTTCACTATG CGCTTGTAACATCAACAATTCCATGAGTGCGCCGACGATAGTTTGATGTGAAATATGCATAGTAATATCC TGTAGCTTGTACATACCCTGCAACCCCCTCAAAGAAAGATTTTATTTATAATTTTCCTACTCCTGTTCAG TTGTATTTTCATTGCATTTGATTGCAATTTACAATGGCTATGATCACTAAAAAATTGTAACTCTTGGGCT TTTGTTCAATACTTTCTTACGGTACGAGATCGGTTTGTTATTTTAAACCCTAGTTATTTATTGTGTTGGG ATAATTTTCTTAACCCCTTAAGTTTTTTAAAGCTTGATTCGGTTGCCTGATCTTAGCTTTTGATAACTAC CACCAGCACCAAACTTGCATTCATGCAATGTGTTTTATTTAGGCAATAAAAATTTGTAAGTTGTTTAATA GCGCTTATATTAACATCCATTCCTCTTTACATCTGCGATGTGATTGGTCGTTAACATGCATGAAAATGAA AAGTAACTGCAACTTGTGAACTCTTAATCAATAAGCAGACCAGTCTCCTGTCCATGTTGAAAGAAACAGC CATACCCTTTTGTCCTTATTGTGATTCATTCATTGGTACATTTTTTTTATTTGTACATATTTTAGTATCA ACATGCAACCAAAATCGTTCCGTTTTGCAATCAAACCGAGTATTGTCTGTAACATTTGAATGATCCGCGC ACAAAAATGAAAGATAAAACCCAACCAATATCATCCGCGTAACTGTTATATAACATGTAACATGCCTTGT TTTCAGCTTGCATGTGTATTTATGTCTTAATATGCATTTGTGATTTTGATTGTTTTTGGACTTTGGGTAG GGGGAGGGGTTTGGTTTTTTTTTTCTAATGTAAAAAATAGCAATATATTTTTGGTTTTCTTGTGCCATTC TACCCTTGTTTCAAAGCCGGGAAATGGCAGTTCGATCATGCTGTACGTGATGTGAAATGTATCGTCATTA TATTATTATTGTTTTGCGTTGAAATAAATACACCTGTAATTTTATTGTGAGCACTGTTGAAAATGGCATT TCAATTATAATAAAAAAGGAGAAAAGACTTGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds