Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038194645.1 PREDICTED: Patiria miniata carbohydrate-responsive element-binding protein-like (LOC119723787), transcript variant X1, mRNA CTAGCAGGTACTAGAAAGCTGTGACGTAAAACACCGGCGACAAAATGGCGGATTATTCCACGAAACGTGC CTCCTCCTGTTTAGTCTGGATGTGACAAAAGTTTTTACGCAAATAACCACCAAAAATGACACGGCGTGAC GGAGACGCCACCATCAAAATGACAAGAATGGACCAGCAAGAGCCAGGACCTAGGAAATACTCGCTTGGGA CTGAAAGTGAGGGCAAAACTTCACCACAGCCGGCGCCGTCGTCGACGGGGTCAAAGCACCGGCATGATCG CGACAGTCTGCGGTCAACTTCCAACTCGCTGCCGGGCTCAAGGGCCTCGTCACGGCCCGGATCACGCATG GCGTCCCGGACAAACAGCCAGGAGTCCATAATTGATCTTTTCGATGGCATGACACTGGCTTATGGTCGGA ATGGTCATGAAGGAAAAGGGTTCCAGCTTATCTCTCCTAAGCCCAGAGACCTCCCTCACCAAAGGTGGAC ATGGACCGACAAGTTGCGCATCAATAGTGCCATCTGGAGGGCATGGCACATCCAATTTGTGAAAGGCAAG AAACCGATTGGATGTCACTTTGAACCGCGACTTCCTGAATCCCGACCCACACTGCAGGCGGATGCAATTC AGAGTGGCCGGGGGACTACTGGCAGCATTCAGTACAACCAATCACAGGTCGGCTCTGTCGTCAGGGACTA TAGACGATGGCGTCTCTACCACATGGACACCGGCAAGCCTGGGACGACCTCCTCCTCTCAAGGGGAGCCT GCAGAGAACCCAGAAGACAAGGCCTTCAATTTGGACTCACGCCACCCACCCCTGTCCCCGATGGCAGCCC GCACACTCCTTAACGATGACCTGTCCAAGGACTTCTACGATACGCTGTTCATCAGCAAGAAGAAGTACTT CTCAGTTCCCCATCCCAAGAAAATTGCCCGCCATGTCTACAATGCCGATATCTTGCAGCCAGGGCTGATG CAGCTGGAACCAGACTTTGATGATGATTTCATGGATACATTGGACTCCCTACAAGATACGTTTTGCAAGA CCCCTACCAAGGTAGATCTGCGTAGTCTGATTGAGTTCAATGATGGTCTGCTCTGTACGGATAGCATGAG CGCCTTCGCTGACTCATTCTTCGGCCCGCTCACGACCGTGAGTGAGGAGACTAGCGATGCACAGCAGGAT CCCATCCCGGTATCAGCCAGCATGGCCCCCTACCCCGTGGCAATCACGCCCAATCCAGCCAACGTGGCCC GCAATCTTACCTTCCCATCCTTCTCGGTCGCTCCATCGGCAAGTACTCCAGGGACGTCCTCCTGTCAGTT CTGGGGCCAGCCCGGCTACCAAGTCACTGCTGGTAAGCAGTCGCAGGCCGGTGGTGCTTTCCCCAAGCAA GCCACAGGCGCTGGTGCTTCTCCAGTGTCAGTGGTCTACACGTCTGGGGCAGTCTTTGACCAGATGCCGC CCATCTTGGAAGTATCGGGTGCTGGTGCTGGAGGTATGACGATGATGGTGGATTCGACCCCTTACCCTAA GCCACAGATTAGCTGTATTTCGTCTACCCATTCACAGGTGTATTCCACAGCAATTGCCAAGCAGGAGCCA TACAGTCCACCAATGGCTACCAGTCCTCAGACCATGAACACTGGAGTGGACATCAACGATGCTCTTGATA TAATAGCTGCTCAGTTACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAGCAACAACA GCAACAACAACAATATAAACAGTTGCAGCAGCAAGCCCAGAATGCTTCTGTTGTCGGCATGAGCCACACC AGTTGGTCTGGCAGTAGTCAGAAAGGACAGCTACAGCCCACCTCGCAGACTTACACCATGCCAATGGAAT CCACTAACTGGCCCAACTCCAACCTGCCTCAGGCCCTACCTTCCTCAGGCGTGAACTGGTCCTTAGCTGG GGGTACGCCAGATGTTTCCATCACTATGGGTGGATTCCCACAAGGCATCATGTCTCAAGGAGGCCTGTCA AGCTCCAATATGGCATTTATCCAGAATGCAGGCGGCCTGCCCCATGTGATGATTGCTGATACCATGGCAC CAATGGACCAAAACATAATCCTTGGTGCAGCGTATTCCCAACAAAATAACACAGCACAATCAAGCACACA CAGCACACCGGGCCACGGAACACCAGGTCACACAACACCAGGTCACAGAACACCGGGCCATGTAACTCCA GGCCACAGAACACCAGGGCATGTTACACCAGGTCACAAGACACCGGGACATGTGACTCCGGGTCATGTGA CACCTGGCCACATGACTCCAGGCCATGTGACTCCAGGCCATGTGACACCAGGCTATGTAACCCCAGGTCA TGTGACCCCAGGTCATGTGACCCCAGGCCATGTGACCCCAGGTCATGTGACCCCAGGTTATGTAACCCCG GGACCACTGACACCACAGATGGATGAAAGCATGGAGTTTGAAGAGTTTCCATTTCCATCCACGCCCAAGT CCGGCAGTAGCACATCGTCATATAAGACAAAAAGAGAGCGCCCTCGCAGTCGGAAGAATTCCCATGACCG CAGTCCACGCGTCAGCCAGGTCGGGTTCACCGACTCGGCCTCCTATGCCAGTTATATGGGAAAGTCTGAG GCCAAAGATCTTGGCATGCCTAGCCCATCAGAGATGTCTGTAACCCCCTTCCTCCCGTCATCCGGCCATC CGTCCAACGTGTCTAGTGCGGCATCCTCCCCTGGCAGCGTAACAGAAGGCACAGAATTTGAGTTCCCCAC ACCTCAAGCTAAACGGAGAAAGACACCAGACAGCAATGGAGAAAAGGAAAGTCGCCGGAGGTACAAGCAC CTACAATCTGAGCACAAGCGTCGCTTCAACATCCAGTCAGGATTGGATGAGATCCAGAGGGTGGTGCCCG GCCTGCGGAATACCAGCGACTCCAACAAAAGCAGTACGGCCACCATGCTGCAGAAAGCCCATGAGCATAT AGTGCTTTTGAAGGCAGAATTGAAAGACATGAGGAACGATGCTGAGAAACTCCGTGAGGAAGTACAGGCG CTCAACACCGAAATAGACTCATGTCAAGATGAGTTACCAGATAGCGGGGCACCAGTCACTGCCCAGAGCG ACCGGCAGCTGCACCAGATGATGGACACCTACACCCACCAGAAAATGAGGGAAAACTGGACATTCTGGAT CTTCAGCCTGATAGTCCGCCCATTGTTTGAGACATACCTGTCAGCTGTTAGCTCTTCCCACATCAGCGAC TTTGACCAGACCGTCCAGGACTGGACTGAAGAACACTGCAGATTGAAACCCCTTAGGAAATTGGTGACAG CAGCATTAACCAAAGTTAGCCGAGAAACATCTATCCTGATGGATCCTGCTTCCCTCCCAACTCAGATCAA AGAAATCATCTCGAAAGACAACGACCGGGGCCCACACGGCAAGACATAACAACAAGCCCCTGCACAGAGT ATTTTCTCAACTTCTAATTTATTTTTTACACATTTCTTGCTTCCCTTTTTAAGAAAATGAAATAAAATTA GCATTAAAGCCTGAATTAGAACCACTATTGTATTATATGCCACCGAGCCATGAAGTAAAGCATGCACCAC AGAAGTAGAAGAAGCCGGGGAGGTCTTTTGCTCGTAGCTGCCGCCAAGTGAAGGTCATTGGTTGAAAATA ATAGATCCAATTGGTGCTCACTATTTATTCGTTACTTGGTTGTTTGTATCATCGGTAATGAGCCTCTGTA CTGATGACGTCACACTTTGTTTGCATGTGCACTTTCCTGTGGAGCCAGTGGGGTCCACGGTCCACTGAGC ACCATAGGAAAGCACATGCGTAAACAAAGTATTACGTCATCAGTACAGAGGCTTATTGCATTCTAGAACT TCTGGGGTCAAATTTGAAATACAAAAGTCAATATGACTTGTTCATGAATGATCTTGCAATCGATTTATTT TCAAAGATAGAAACATTTATTGGAAATGATAGTATACATTTATTTGTGCCATGTGGATTAATCAATTTTT TAAAAATACGATTTGTATTTGAATCGCATGATATGCTGCATTATTTATATGTGTTGGCGAGAAGGTGAGG TGGACATTGTTAAACTGGTTAGGTAAATTACTGCTGCATTGTGGAAATTTGATCCCAAGATTATAAATAT TGGTAATCGCCTCAGCTGCTGAGGTCAGGAAAGTTTTCCTTTAGAAAGTAACATTTTTATGTAGCTAGAA TTAAGAAGTGGCAACAATGGGCAGGTGGCCACAATGGGCAGGTGGCCACAATGGGCAGGCGGCTACAGTG ACAAGTGGCCACAAAGTACAGGTGGCCACAAAGTACAGGTGGCCACAAAGTACAGGTGGCTACAATGGAC AGGTGGCCACAATGGACAGGTGGCCACAATTGGCAGGTGGCTACAGTGACAAGTGGCCACAAAGTACAGG TGGCCACAAAGTACAGGTGGCCACAAAGTACAGGTGGCTACAATGGACAGGTTGCCACTATGGACAAGTG GCCACACTGGTAAATCTGTTTGTGTAATATGAGCAAGTTAATTTGCATTGCTGTATATCATCAACTTATG CAGATTATTTGGTGTTGGGCCTATCCAAGCCACAGTGCTTTGCCCAATAGTACCAACATGGCTGTATCTG TGAGAAAAGGATAGATTACAAATGATTTTTGTTTCAGTAACATATGTGCAAACACCACTGTTAACAAGAT AAAGAACACTGCCACCTACATGTATGAGTTTAGGTACTCGTTCAAACATATCACCTGAATCAAGCATGGG CGTAAATCGCACAGGGGATGGGCAGGATATCTTTCTGCCCCCCCCCCCACACTTTTTTTTTACCGGGGGT GGGGTTGGGGTTGGAAATTGGATTCTCCATGCGGATTTTGAAACTTTCAACTGTCCAAATTTATGAAATA GTTCAAAAACGGAGAAGAAACAGTTCAAAAGCTTTGAATATATCATTTCCATGTAAGGTTAAGGGACGCA AGTTTGCATTACATGTCCTTTTTTTCATGAACAGTGCCCCAGAGTGTCACATTGTTATCCCCTATCTCTC TCCCCCCCCCTTCCTTCCCCCGCCGGGCAGTTTTAGGATTTTGCGGTATGGTCATCCCTTGTCCCCCCAC TCCCTGACACAGATTCATGCCACTGGATTCAAAGGAAAAATACCATCATTGATAATAGAAATATTTACAT TTTGAAGAGAAAAATATTTTCCATTTTTACCTCTCATATAGTAGCAAAGTAGCCTGTATCAGGCATTTAC TACACATACCATTTCTTTCAATGTTCTGGGAACCATTTCCAGATCAGTAACTTCCATATGCAAGTGTTTG ACTGTAACTATTCTCTTTAATACAAATTAGTGCCGTGTGCTGTATGTACAGTGTTTTTACTCATGTAAAC AATTGTTCCCTCTCATTGTACATTAACATCCAAGCACAATTAGAAGAAAAATCATGCGATTAAAGACTAT GGAAAACATGGCACCAGGTTTAAGATTCATTTGCACACCTTGTAACGATCCTATCAAATTCCATAGAAAT AGTACAAAATAAATTTGAATTTGAAAAACTGGAACAAAATTGAAATGACTTGTAGAGGTTTAATTTTAAT TTGTTTTTCTTTTACTTTTGGTTGGAGTTGTGTGCATGCTCATGGTCTTAAGCGGAAGTTTTAGAAATAA AGAAGGCGCTGTATTTTGGTTTTTAAGTTACACTGTTCCATTAATGTCTTAGAAATGTGGCATAATTATT GTGTGCTATGTATATGTCTATATTTATGAATTTTACATGAAATATTTGGTGCATGTGTGTTTGTGAGATG AAAGTATGGATGTGCTATCTTTGGATGCTATGTGTACATTTGATAGTGCTGATGATTAGTAGGGTGTAAT TTATTGTTTGAATAAAGATGTGTTTTTAGAGTCACCCAAAACAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds