Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041623948.1 PREDICTED: Lytechinus variegatus solute carrier organic anion transporter family member 4A1-like (LOC121427512), mRNA GATCGCTAATTGATACCGGGCAAAGTCCAACATTAATATGTCACCAATAAATGATGCATTTCATGTGGGT TGGTATAGACCGTCACTCTAAATTTCTCATACGTACTACAAATATGACATTCTGAAAAGCGTAGACGTAT TAGATACTGCCACTATAAGACAAGACGTAGCCCATTTTAGATCTGGAATTTCTGGAAGTGTGTGACTGGA ATATCGTTTATAAATATCATTTTTAATCGAATTACTAAATGAATATTACAGAGGACTTCTTCAAAATGGA CTTACAAAGGACTAGCATTCTTATCTGAGGAGCCATTCTCTGTAGCGAGTGTAGTTAATGTAAGGGAGGA CCATTAGTCCATTTTCCACTGACACCAGACGAGTAGTTTGAGAAGCGATACAAGGTAAATTATCTAAAGA ACTATGGATGGAACGTATAAAACAAACAATGATGACAGAATACTGTTAAGGCCGCCCTCTACGGTGGGTA CTCAAACCAACTTCAATGACCCTCAGAGAGCAGCTGAACTAGAACTCGGAATTGACAACCCCCTCGCCGT CGAGACGGAGACGACGTTACAGAACGGTCACGTAAATGAACAAAATGGGGGAACATCAGATGGCAAGGCG AGGGCGATGTCGAATGGCAATGGTCATATTGCGGATTCGGATGCACTTCCACCCAAAGAGAACGATGTCG ATGAAGATGATAATCCACAATGTGGTTGGTTTAGATGGAGACCTCAATGTTTACAGTGTTGTAATAACAT CGTCGGCTACACCCTCTTCTTATCAATCTTCGTAATCGCTCAGGGTATGACGGTCAATGGTCTAGTCTAT GTGGTCATCACCACACTCGAACGCCGTTTTGGATTCACCAGCGTCCGTAGTGGATTCATCTCCAGCAGCT ATGACTTCTCAGTCATGGTTATCATCATTTTCGTTACGTACCTCGGCGAAAAGGCGCACAAGCCAGTCTG GTTGGGTATTGGGGCTTTCATATTTGGAATCGGTTCGATTATTTTTACGTTTCCACATTTTTTAAGTGGA GAGTACGAATACCAGGATGCCGATTTTGAGATGTGCGACACAAACCGAACGTCAAACGATATATGTACGA CGATGGAAGTACAAGACGAGACTCTAGTCAACTTCTACGGAGTATTCATCTTAGCTCAGGTATTCCATGG TATCGGTGCCTCACCTCTCTACACACTCGGTGTCACGTATATCGACGAGAATGTGTCGTCAGCAAACTCT GGGCTCTACATAGGTGTGTTTAAATCAATGGCAATTCTGGGACCAGCAATAGGGTACATTGTGGGCGGAC TCTTCCTTGGTCTCTATACCGAACTACAGGCAGCAGATGAGCTTGACATCAGTCCTTCAGATCCTACATG GGTTGGTGCTTGGTGGCTAGGTTTTATAGTAGCAGCTTTAATATCGTTCTCTATCGTTATACCATTCCTT GGATACAGTCGATCATTACCAGGTGGAAAGGCAATTTTTGCCCAGCGTGTGGTTGAAACACAGAAAGGAA CAGAATTTGAAGCGAAGTCGGGATGGAAATCAATTATGCAATTCCCAAAAGCTTTGTGGACACTATTGAA AAATCCTCCTTTTATGTTCAACAATTTATCGACTGCCATGGAAACATTTATACTCGTCGCTGTGGGTGTA TTTGGTCCGAAATTCATGGAATCACAGTTTAATATGACAGCTGGAGAGGCAGCTATAATAGCAGGCATCA TCGTCACACCATCAAGTTTTATAGGTGCTTTGTTTGGTGGCTGGGTCGTCAAGCATTATAATCTCAAATA TCGAGGCATGATGCGTTTCACTTTAGGTGTTCTTATTTGCAGTTTTGCCTTCCAATTCGTCTTCCTAATC AGCTGCGAAAACGTAGACTTCGCTGGTGTAACGTTGAACTACGGACGAGATCCCACAGACATAACACCAG AGGAAGGATCAAACGTTACTGCTACTTGTAATGGCCATTGTATGTGTACCAATAACTTCCAACCTTTATG TGGTGAGGATGACGTCATGTACTACTCGCCATGCCATGCTGGGTGCACAGTTAAGACATACAATGAGGAA TCTATATCGCTTTATTCTGATTGTGACTGTATACCGCCTACGAACACCACTGCAAGAATCGCAGGGAAAG GTACTGGTGGTCGCTGTGAACAGGGGTGCTCTTCTCAACTTACCTTCATTTTACTCGCCTTTGTTCTTAT TACTGTAACATCTATGATAGCCGTCCCACAGCTTACTGCCACTCTACGTTGTGTCTCGCAATCACAGAGA ACATTTGCCTTGGGAGTGCAGTCTGTTATATACAGGTGTTTAGGATCTATACCTGCACCGATTATCTTCG GTTCCCTCATTGACCGAACGTGCCTAATATGGGAGGATGAATGCGATGGCAGCCGGAACTGTTGGATGTA TGATAATGCAGAGTTATCTCGATATACCCTCATCATGATGCAATGTGTTAAAGGTGTGTCAATCATTTCC ATCATCCTTGCTCTCGTCACCTACCGTCCAGCCAAAGAGAGCAATGAAGAGACTGATCCACCGAACACCA TCAGTCAGGATGTCATGCCGGAAATACCCAGAGTAGAAGATGATCGAATGGATGAGAAGGTATAAAGAGA AAAACGCATGCGCAGCTGATATGCCTTGCGCGAGGTGCGCTTGCACTGCAGTAAGGTTGTTTCGTTGGAT CTGGACGAGCGTGCTGTAGCTGCCATAGGTGAAATATTATGATGTGTACATACTCGCGTTCCGAGACAAC TCGCAGAGTAGGCCTACTGCAAGTATTCAAGAAACGAAACAGCAAGATTCGGTGTACTTTATAGAATCGC TGTTGTAAAATGCCGATTAGTCTCACTCTATCAAGTATTCTAATCAAATCAAGATCGGTAGGGAACAGGC AATGCTCCTAATTGCTAATGATTATCTGACACCCTTTCCCTAATCTAAAGCTGAAAGTTTTTTGGCCTGG CAAAATGTGAATTCCGAGACTTATAATGACCCAAACTCCAAAGGATCCAACACACATTTTGACCGAGCAG AATTCAAGGTTAGGCATGCGAGTATGTATGTGTGTTTGCGAACAGACTTGGGAGGGGCAAAGTTGTTGAC CGGGTTAAAAGAAGTATTTGGTCTGCCCAATGAGATAACACCAAAGAATCATTTACCTTCCAACTCAGTA TCAACTTACCTAACATCTATTCAGTACAGAGTTGGCACCAACTGAGCAACATTTTATAAGGCATTTCCAT TAAGTGTGATTTTTTTTATGTTTATGTATAACAAAAAACTTGTTATTATTATGTTTATGTATAACTTTAA AAAAAGGTAGTGTAGGTAGGAAGCAGGGCGAGTAAGAAGACGTCAACGATTATGAAATCTGAATTTTATT ATTTCATCTCGTGAACTTTATCAATTCTATCATTTTTTTGTATGAATCGACTATACTGTCTTAATATTTC TAATCTGGCATTCTTGATGCCATATTCTGACAGTATTTATTGATTTTTGTTAAAATTATACTTTTTATAA AAAGGTTCTTAAAAGTATATTTAAAACTTATGAATTATTTTATTTTTAATTTTTATGCTCTAAGCAAATT CCTGTGTAAATCTAGAATGAGATGAAAATTATTTTGTATATAGCATAGTAAGCGTTAAACGTGAAATTGT GTTTTATCTGAAAGTTGAATGTGCTTGCTTCTGTTTATGTTTTGTATGTTAGACTTCATCCCACCGTTAT GAAAGAACTATGTTCATAATTAATGTTAACTTGTATACTTCCCTCCGATTTTTGTTGCTGTATGTAAATC TTAACCAATTTTACGACATTTTCAGCGAGGTTCCACTTTTTTAATCTTCTGGAAAACCATGTACATTCAT TGTCAATATGGTTAGATACAGTAAATCAAGATATGTATTTTGCGAAGTGAGGATACGTTCTGATGTTTTG GGGGTTCTTTCAACATGTTAAAAGGGTATAGTCTGTGCTAGGTTAGGTCAGATACATACATGCCGAGCAA CAGAGATGTAAAAAATGAGTTAAAAACACGTTTCTGTTTATGTTTAAATGTAAATCTTCCCCGATTCGGT CTGAATTTTGAAGAAATGTATTAATGTCTTGATAAGCTATTTCTTCACAGGGGTTACACTTGTTAAAATG CTCTAGTTCACAACAGACCACGTGGAAATGTCAATGGGGTGCATTATTTTCACCAACACAAAATCTAAGA CATTTAGAAGTATAATGAAAATATTTTGTCTCTCATGAGTGCTCCCATGATATATGATATTCTTTAATTT AAATTTGCCATCTCTAATTGGAAAACCATACAATTCATTTTCATGTTATCACGTTGAAAGGTGTTTAATA ATCGTGTATATACTTTTAAAATTGTATTACCTTCATCAATTTCAAATTCAATGTTTTTAACAGTGTCTTA GCAGGGTTTACATTCGCTGTAAAAATTATTTGTAACTTAAAAACAAACTAAGTTTGAACATGGTTTCATT TTTCATCAGAAGGTGTACTTCCATCTGTTACTTTGAAAAGGACCATTATGACCGTTTTGAATGTTGATTG ACGATGTTTTTTTCTAACGAGAATCATTACACAATGTAGAAAAGTAGTTAGGTGTGCCCTTTATTGGGAG ATAGTAAGGATGGTAAGTCCATAAATCCCTTCAGTCAGCTCTTAGAGTTTTATTTGTATATTCATCTTTT AAATCTACAACAAGAATGAAGGGAGCCTATCCTTTATTCGCCTATTTCAAGTGAGTTGTGTGCTTTCAGT TATGATCAGCTTGACTTTATTTAATTATTTTTTTTATTAGTGCTAGACTAAAACATTCCAGCAAAAGATT ATTGCCTTCTCTCAAAATGCATCCCAAAAGGAGAGAGATTCCATCACAAGGAAAGATTCTTCTTCTTAAC TTATCTGAACGTATTCCTCTGTAGATGTATGTTGATGATATATTTATAATTTTCTATAAAGGATTCAGGG TTTTGGACTTTTTAAAAGTGTATTCTTAATAGCAGTGCCATTATTACAATATATCCCTTTTATGGTCGAT ACCAACAAATATTGCTTCTTTGCATTCCAAGGTAGTGTAAAAGCGTTGATAATAGTAATAATGATAATAA AAAAGAGTTTGATAAGTCGGTCTCGGTTAAGGCAAAGATATGTTTGCTTTATCGATACTGGGGCGATGGT ATTCACTTATAAAGCTTTATACATGTATAGTTCAAAATGAAAGATAGAATTTAAAAAATAGATTGACACC CGCCATGTTCGTAATCTCTAAGCATACTTTGTCTTATTTTGTATTCTTTAATTCAACAGTTCCAGGAGTT TATAACACTTTTAGAAGATCGTCATTTTCCATTAAAAAAAATAAATCGATATTCTGGCAAAAATTTTCGT TAAAAAAGAGATTCATATGAAGTACATGTAACTAGAAATGTATGACACGGCACTCAACGAAGTGTCATAT CGGTACATTTTCTATCATTGTGTTGCAGCGTCAATCTCATTTGAACCACGCCCTCTACGTTAAAGAATCA CTGACTTTGGCACTCGGTTGGAGTACTGGTATATACCATCCGGAAATATTCGAGTATGGGAGGCGAACAT GACTTAACCCATTGAATGCTATCGACTTTCGTGCTAGCGCCTTGTGGGCATTTTTTGCAATGGTACCTCA GGGTTGTACTGGTTAATGGAGATAGTCCAAAGTCAGTTCAAGAGAGCTCACCAAGACCTGTGTAATGAGC ACATGAAAGGTAACTGGTTTTACTATTACAGTGATATTAGAAGTGAAACCTTTGAAACAGCTGACTGCCT GCATGTAACAATTTCAAGTTTGTCTTTCCAAAACGAGAAGGGTTCCATAAAAATATCAGTCTTTATTATT TCAGATCTTTGATCACAAAGGGTAAAGATATACCTTTGATCTTAGACCTCTCATCTGACACGACATTTTT TTATTTTTGTTCACCATAAACACTGTGTGACTTCGATTTAATTTTTGGTAGAACAAATTTCAAAGATAAG CTGCAATGTTCATGATAATCATCAACAGTATCATATATTTTTTACTGGCAAAATAAGTCTTATTCTATGA CTTATATTAGATTAAAAGAAATAGTGTGAACAATAGGAAATGTTCTAATAGGATATCACAAGTTAAACAA CGTGTCTTTTGATAAACGCTACTAAAGAGAGGGTCAAAGTTGTCGCTGATAAAAAAACATAAAAGAAATT GAATTTTAAAATTTTGTATCCACCCGAATATTCCTTATATTTCTTATTCTTAAACAAAAAACGAAGCGAA CACAAGAAAATTACGCAGCATAAGTTTGCAGTTTATAAAAACTATGCTATTTTAAAAACCATCTAATGAG CTCTCTTAAAGCATTGTCATAGGCGATATAATCATTAATTTAAAGTCATTCATTCCTCAATTGTGCATAT CATCCGTTTGTATTGTTTGTATTCCGATAAAATAGATGTTGTCGTATAATATGTTTATGACACTTTATGA CATCCACTAACAACATGAACAATACATCCTTCTAAAAATTATCAGGTTTGTGTGATTGCGAATAATACTT TATTCATCACACCATTCCAAAAGTTATACTCATCGTGTTAAAGATAAAACATTCCATTACTAATCCATCG CATACCAAGAAAAATTATATATTCTTTGTTTGGCTAAAATATAACCACTCGTGTTGATTTTATCTCAGAA AGAGACGTATGGTAAGATGACATAATATTCATCCATCCCGCGTGTAGTAATCTAAATAATTATTGAATAA TTAGATGGGTCCAAACTCTGAACATCCATCGTTGCAACGAAATCAGAATCGTTACAATGTAGAATTCACA GATAGAGTTAGACGTGTTGTTTGATTGTTTTCACGAAGATTCAGCCTATAATTATACGCACTGCTATAAG AAGGTAATAAACCATACTTAAGTACAACTATGGAGCTATCTCATGCTACGATATAAATGTTGTTTAATAT CAGAAATACTTATTTCATAAGCATTGTTTTGCATTCATTCATTTATTCTGATAGAAATTCCCATCTCATC TTTCACGGAATCGAATGCAATACAATTTTTATTGTCAGTAAAAGGATTGTATTTATATCTCATTTTGTAA GTTCGTGCCAAGTTAGATGTATCAAAATTATCATTTTCGAAATAGTTGTATTATCTTGTACTTGTTCTAT CAACTAATTTCTTTCTTTTAATCTTGCAAGTCTTTCAAATTTGAAAATCATAAAAATTGCATCATGCTGT AAAATAGTTTCAAACTTTATGTTAAGGTGCTGTATAATGTTTGCTGTTAAGGGACGCATAATTAGAGACT GGAAGTTTAAAAAAATGACTTGCTATATGAGCAAAAAACAAACTTGACTCATCGTCAAAG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds