Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT121642.1 TSA: Strongylocentrotus purpuratus WHL22.228117.0 mRNA sequence CGCCACGGGGAATCGGGACTAGACTAGCTATGTTGAACCTGTAAAAATGTCGCATCTGCCTATTTCAGTG AAGAAATGCAATATAGAAAAACCAGCTGATGAATGTGCAGAGGCCCAGCCATACCAGCGAAGCGGACATT GTTGCGCCACCGATGGAGTTAATTTGTATGTATTTGGAGGGTACCATCCAGAATATGTCTTTGTCGATGA TAGGAATCTGGAAGGAATAGCAGAGCATAAGGTATTCAGAGATTTGTGGTGTTACAACTTTGCTACAAAG ACATGGTATGAGGTAAAAACATCAGGAGTTACCCCTTCAGAGACAGCATCAATGTCAATGATACTGAGTG GAAACACTTTAATCTGTTTTGGTGGAACTCTCTACCCATGGGGGTCAAAGAGCAACAATAAGATAAACAC CCTCAACCTCACAGAACGCAAATGGAAAATACTGGACTGCAACGATACTATCCCGGCAAAATACGGACAG GCCATGACCCTACATGACGGAGCCCTCTATGTGTACGGTGGATGCAGACGGATCACCGAGGTGGATCATC TGTTTGATTCAGAGCTTCATCGTCTAGACATGAGGACTCATGAATGGTCTCTCATCCTGGATAAAGATCG GCAGGAGACGGCTACCATGGCCCATATGAGAGGCATGTACAGACATGGATTGGCTTACTGTCAGGACAAA CTATATGTGATCGGGAGCAGCTGGGAAGAGCTTACCAGCATACCTTTATATCAGAAGGTACATGTATTTG ATATAGCAGAAGGTAAATGGTCATGGCAGACAACAATACCTACAGAAGACGACCGTTATCCGCGGAGAAG AGCATATCATGGCTGTGCACAATGGAAGTCAGAAGTTTACATGTGTGGTGGTCACGACGCCCGATACAAC GTCATGGATGATATATGGTGTCTGCATCTTCCTGAGCTGAGATGGGAGCAGTTATCCACCACTCTACCGG TACCAACCTTCTTTCACTCGGCAGCAATAACTGATGCTAAATGTATGTATCTCTTTGGAGGTGTTAAAGG ATTTGCTGGCGGAGTCCACAATAATGACCGTGAGCGTACCAGGATCATCCAAAAGATTTGGCTTGCCATC CCTTCTCTTTCTGAACTCTGCTGGCAACATGTTCTGGATCTTTGTCCAGACATGGCTAAGCTTTCCAAAG AGGACCTGTTTGGTCTGGGGATACCAAGGATTTTCACAGAAAGATTAAAACCAGTTAGATGAAAATTAAT AGACCATATTTTTCCTTCTGGAGACTATGAAAGATATATGGTACTAAATCCAGCTGACGTAGATAATACA TATATGTTGATTACAGAATGTTTATTGTCCTTTAATTATGTTGTATCCTGCTATGCGAGATGTGCATGAC ACCATGCTATTGTTTACAAATATTAAAGAATAAACTTATTGACAAACCATGCTCAAGCAATGAATGATGG CGGACTAATGAATATTAGAAGTCAGAATGAATCAGGAGAGCTTAGGTATTTGTTTCTAGTTCATCATGAC TGTGCCATGGACCAGTTATGGCCTGGTGGTAGAGTCGTTCCCCGGCAAGCAGTAAATCAGGTTCAAACCT TTCTGGTTCAAAGATTTTTCTGACTGTTTTCAATTATAGATCAATCAATTGATCTTTATTTACTGAGTGT AAGCCACAAATATGTTTAAACAATCTTTAGTTTGATAGCTTGATCACTGACTACCACATTTATTGGTGGA CTTGCTTGCAGTGTTGTCTGATTGTTTGGCTTCTATTATAGACACAAAGTTGTGATCACACCAAAGATGT TTAAACAATCTAGTTCACTGCAGTTCAGTTCAGTTCAGTTGATTTAGTTATGGAGCTTACAATCTACCAG CAGTCGTTTTACAGAAAAGCCAAATGCCCTGGCGGTCAGTGCGAATGAACGCTTAGAATGTTTTGTTCAA TAATTTGTATGCTCCTTACCTTAAACAATCATCGTCACCTAGACAGTTGAGCACTTACTTGCACAAGGAA TTTCTAGATGTTTGGAAGGTGAGCCATCAAACTGATGAAACATTGCCAAAGATTGAGGAAAATTTGTCAG TTTTAGAGCGATCACGCTTTTTGGGAGACCCAAATGCAAGATTTTTACAATGTGTTTATTTATTTTCTTT TTGCGATGATACTATCATACAATCTAGTGAGTTGCCAATTAAAATTCAAGACCTTTCAGTCAGTGTGACA AATTTCTTTATTTTTTATATTTTTATTTTTTAAATTATTGTTATAGAAAGATTACACTTCTTTTCTCACA AGCATCACCCCCACATTGGAGCTTTTATTTGAATTTGAAATCTTTGTTTATTTTGTACACATGTGATTGT GAAGCTGCAAAATTGATTGTGATTGTATTTAATGAAAACGTTTCTAAAAATGAATAAGGATGTGAGGTAG ATATCACGCTTTTCTCTGTCAGTTTGATATCTATTACTTCAGAACAGGATGACCTTAGTGGTAATTAATG ATCGGAACTCTTTTAATTGAAGTTTAATGGATTATTATATTATTATACAATATGAATGTATTACTTAATG TCCAGTGTGTGATATCCAATGTTTATTGATAAAAATGATCATTTATATATCTATTTTTTAATTATATTAA TTACTTTGAAGTAGACCTATTATTGGTACATGTACTCTGGACAATACTTAATCAGTACACAAGTCTTGTG GATGACAATATGAATTGGGTAATGAACATGATAAGCCTTTTGTATGATTAATATTCTGTGTTTTATCTCT GACAAATAGGTCAAATGCTGCAGTAGTAATTTAACAAGTGAGTAATGGACAAAACTGTTAAGTGCATGAT ACAAGATATGAAATCATATGTACATTGTGTTTGTTTGTGTATGCAAGTGAACTCAAAAGTGCTACTTGCA AGCATAACTTTAAGCCTACCGTAATTGGTTTTAGACAAACATATATTTGATTCAGTAAAACCTTTTTTCC AAACTGCAGTGTCCCTAATTTGTTGAATTGTCAGCATTAGTAAATAGCTAATGACTGAAAATGCAAAGAC CAGTAACTTTTGTCACAGAGTATGTAACATAAATTTCAGTGAAACATTTTCCTAATATCAAATCTTGTTC AATGTCAAATTATGTTATATCATTTTGATAACTTCTTGAAATGTTTTATGTTTATTGTTTTGTTAATTAT GATTGATTTTACTCTACTTGAAGACTAGAAATTACAGAATATTGTTTAGCAATTTGGGTGATCTTGCAAT TCATGAACTAGAAAATAAAAAATACTTTTCAAAGGCTTTAAGTTTAATGAAACATGGTGCTGCTTTTATG AAAAATAGTAAGAAGTTGCCTATATTATGTGTATAAATTATCTTACAACTCAAAGTGTTTCTAGTACTGT ATATTCAGGTACAATGGGAACTATTATGATGTTTTGTAAAAGGTTATGTCTAATTTGCAACAACAACAAC AAAAATTGTTTAAAACTACGTGATAATTTGCACCTATGTATCCCTTCCATTCTGACTGGTTGACACAATT AGAATCACGATATATGTTCTTATTTGATGAATTTTCAGAGGATGCTATGTGGGATGGTAATTCATTCAAG AAGTTCAAGAATTTGAAGCTTTACTAAGTTTACTGTAACCACCACAATAATGATGGACTAACCAAAGTCT TGAGCTCTCCTACATGGTTGATATGAATATTATCAAAGGATTATATATATATAAGAATTTACCAATTCAG ATTAATTATATCATTTTTTTGTAGTTAAGTTACAGTTAAGTTAACTATTCTGTCCCCTGATTGCTAGTCT CCAAAGCAAAACTCTTATGATAGCAATTGAGACAACAGTACTGTGGATAGTTGATTGCATGGTATTTGTG ACATGTCTACTTGGAATCGTTAGATGTGTCCAACTACAAATTAATTACAATAATTTTTGTGTTTAAACGA AGGAGATCTGAAGCAAGGACTTTATTTATTTATTTATATAAATATATAGCTGTATGCATGGAGCAATTTT TGTTTAACTGTTTATATTTTAATCATTCTTTTCAAATAAAAGAGTATGCCAAGATAATAAATGAATGCTG AATCTCATGTGGACATTATTGATAAATACCGATCAAGGCAGTTAATATTTGTGCTCTTGACATTATTTCA TTGAGATATAGATTAAAGGGCAATCCAACGCTAATAATAACTTCCTTTTGAATAAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
