Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038189321.1 PREDICTED: Patiria miniata citrate synthase, mitochondrial-like (LOC119719828), mRNA CTCCCAGCAGCATACATGTAGATTATATGTCGGCTGAACATCGGCACCTGACTTTCTTACGGACGAACGT ACGTGCGCCTTTCGTGCCGCCGGTAGATTGCAATTAGTTTTCCTCAATTCGCCTGTTTCCCGAGCCCTCA ACTAGCATAACACAGGTTGCCTGCTCATCATAATCAAAAAAATGTCTTTGCTCAAAGTGTTATCAAGACG GACCTTTCTTCAAGCCAAAAATTTGGTGCCGTCACTAACATGTGGTGCAAGAAGTGTCTCAGATTCAACG AACTTAAAGGATGTGTTAGCTGACATGATACCCAAGAAACAGAAGGAGGTGATAGAATTCCGTAAAACCT ATGGCGACAAGGTGATTGGTGAGGTGGTGGTGGACCAGCTGTATGGAGGCATGCGAGGTATCAAGGGTCT GGTGACAGAGACCTCTGTGTTGGATCCAGAAGAAGGGATTCGTTTCCGTGGTTACACAATACCTGAATGT CAGAAACTGTTGCCTAAGGTTCCAGGGGGCGAGGAACCTCTACCGGAGGGACTGTTCTGGCTCCTGATGA CTGGAGAAATACCAACTGAAAAACAGGTGCAAGCAGTGTCTAAGGAATGGGCAGCCCGTGGTGCCATCCC ATCGCATGTTGTTCAGATGCTGAATAACTTCCCCAGTAACCTACATCCCATGTCGCAGTTCAGCGCAGCC ATTACTGCTATGAATAGCGACAGCAAGTTTTCCAAGGCATACAATGATGGAGTCAATAAGGCTATGTACT GGGAGTACACCTATGAGGATGCTATGGATCTGTGTGCCAAACTGACTACTGTAGCTGCTACTATCTACCG CAATGTGTACCGAGAAGGTAGCAGTGTATGCCCCATTGATGTAGATCTAGACTGGTCAGCAAACTTTGCT AACATGCTCGGTTATGAAGATGAGATGTTCAAGGAAGTTCTGAGGATGTACCTCACCATTCACAGTGACC ATGAAGGAGGCAATGTGAGTGCTCACACTGTTCATCTGGTTGGGAGTGCTCTCTCGGATGCCTACCTGAG TTTAGCTGCAGGCATGAATGGTCTGGCTGGACCCTTACATGGATTAGCCAATCAGGAGGTTCTGGTGTGG ATCACTAAGCTTCAGGAGCAGCTTGGAGGAGAGGTATCAGATGACCAGCTGAAAGAATTCATCTGGAACA CTCTCAAATCAGGACAGGTTGTACCAGGTTATGGCCATGCTGTCCTGCGCAAGACAGATCCCAGATACAC CTGTCAGCGTGAGTTTGCTCTGAAGCACCTGCCTGACGACCCTCTCTTTAAGCTGGTAGCTCAGCTGTAT AAAGTGGTTCCTGATACCCTGCTGGAACACGGCAAAGCTAAGAACCCCTGGCCCAATGTGGATGCACACA GTGGGGTACTCCTGCAGCATTATGGCATGACAGAGATGAGCTACTATACAGTATTGTTTGGTGTGTCCCG AGCACTGGGCACTATGGCATCTATGGTGTGGGATCGCGCCCTCGGTCTGCCCCTGGAACGACCCAAGTCA ATGAGCACACCTGGCCTGATGAAACTGGTGGGAGCAAAGTAAATCAAGCACCCAATCACATCCTGGTAGT AAAACAACTACATGTATTGCAATTTAAAAAGGACGTGTTCAGCACCAGGTGTTGTACATGTATATTAAGT GGATCCACTCAAGATGAGCCTATTTTCTGCCATTTTGTTGTACATGTATGTTCATTCAGTAATGTTCATT TATGATCAGACATTGTACAAAAGATAAATATGTTGTCAATGCCTATAAGGACACAGAATAACCATAGTTA TAATTGTAATGTGTGACTATAATGCAGTTTAGATACAGTGATTGATTATTTTACGCATGCAGCCATAATC TCTTTCCATTGTTAGTTCAGTAGATTGCAAACCAGTTCGTTATTTCAACTGTCTTCAAGATCTGATGATT TTCTGTTGCGTGTAAATGCAACAGATAAATGTACACATGTCTATTGGGGAATAATTAACGAATCTGCAAT CGCCAATTCTGCCACTTATCAGAAAAAACGAATGCAGTTCAAAGTTTTCAGGATTTTGTATGTGCTTCCA GATGACACTTTAATTCAATGTTGATGGTACCTTCTGTGACTTTGCATTCATAGGGCAGACTGTTGATTTT CAAGAAAACAAATCATCAATCATCTTGATGCATGCATGTGCAGTTGCAATATTGAACTGGGCATATTGAT GCAAACAACAAGTAATGTTACATTTACTAAGTTGCCGTATGTTATTCATAAATGATAAACAGTTTGATCT GACCTCCAGCAATAGTTGTTTTTGTCAACTTTGTCTTCATGGGCTTACCAAGATATGGACGTAGGTGGTT TTTATAAGGGGAAAAGGGAAAGCATTTTTAAAATTTGGATGTGTTGTTAATAGTGTCTTTCTACAAGGGA TGTATCTACATAGAGCTAGAAAAAAAGTTTTGGGATGTATTAGTGCACCGTGTACCCCTCGTGGCTAGGA GATTATATTGTACTGTAGCGTAAAGACTACTCTCACATTTGTGACGTCTCCCACCAATGGGCTGTGAAGT TGAACATTTCACTTTCTAGGTTAATGCATAATTGAAAAAAATGGTATCATCAGCTTTGATACAAAATTCT TTTCTATGCCAAGTTATGTGTTTTAAAGTCACTCAACTATCATTTACTAGATTTCCATATGAACTGGCTT CAAAGTTGGCTTACTGATATTCACTAGTTTTGGAATGTCAATCATTCCTGATTTTTCAGAACGGAAGGAG AATATCAAAACACTTCATTTCTGATTGACTCCTGGCCATATTTTCTAACTGTTAGCTTTTTGTGCTGTAA TGCATAATCAACATGTGCAACTTTACAACCTTTAATGGTCACATGGTCACATTTGTACACTACCTATGCA AGGCTTGGGCCCCTACACTTTTTTGACTAGAGATAGCATGTTTCCATGGAGGATTTGGTTCTAGATTATT AGCAGTGTTCATATTGCCTGAGATATATAGCAGTACATGTACCGGTATAAGACTAAGAGATATATACTTG TACGTGCAGCATCATGTTAGGTTATAAACATCCTTAGAGTAGAGGACTTTGGCTCTAGAAAGGAAATGCT GTCAAGGGTTTTTGTACAATCTGTTACAATAAACTGATTAAAATGAAACATAAAATGTTGAAATGGTTCC GGGGTAGAGTATAGGCAATTTGAGTTCCTGTGATGGCCGAATTGTTGTAACTCAAAAGTCCACATACATT TCTACAGTAAGTGAAATTCATTGCTTTTACTTGCCTACCACCAATTACAATGATACTGAATTGTTTTTAC ACTTTACCTCATGCATATTCATAACTTTTTTTTTAGATTTTAATCTCGTTTGTTCATCAAAAAATAAGAG TTGCATTTAGTAGATTCTGAGATTAGTACTTGCTCATCACTGCTGACATGTATGAGTGCAATAATGTCAT GCGTGATGCATTTTTGGTAAGTTAACATGCAGAAAAACCACTCCATCACACTGCATGATATGCCAAGTTA CATCATGAATATGTATGAGTACCGTGATCATTTCATACCCGTAGTTTCGTTTTGAAAGTTTGTGTTTTCT TAGTATTCTCTGACAACAAAAGTGTGAAGAATATATGATTGCTTTAATCAACAGTCTTTTCATTGGCATA TAATACTAAGAGCTGTATATTGGCATTTTGTGAACATTGTAAATAATTTAAATATATATACCCTAACATT TTAATTAGGCTGACACTCATGTAGTTCTCCATAGTACACGTTTGTGTTTCATCTCAATTCCACATAGCAT TTCAACCTCATTCTTTTTCTAAACAAATTCATTTTTCAAAAGGTTGCTTTGGGAAATATCAATTGTTGTG TTTTGTCCATGATGCCAATTTTATCCTTGAACAATATAACATTTTGATGAGGGGTAATAACAACTCTACA CATCTAAAACTTGGTTTGCAGTTCCACCAATGTAAACTATCCCCATAAAGAGAGGTAGTGCGGAGAACTA GAAGAGTCAACCCTCTCTTTTTCAAGACAGTTACTTCACATAATGGCCACGTGTGGTCTAGCGGTGGAGC ACAGGATTCATGATCGTGAGGTTGTGGATTCGAGCCCGTTGTGGCCATGCGTGTTGTGCCCATGCGTGTT GTGCCCTTGCGTGTTGTGCCCTTGAGTAAGGCACTTTACCTCAATTACTCCTCTCAACCCAGGTGTTAAA TGGGAAATGGGCACCAGCATTATTCAATGCTTGGAAAGTAACAGACTCACTGTGGAGCAGGTGTGGCGAT TCCCACACAACAGCATACGAGTCTGGCCCAATCGCTAAAAAAAAGAGAGATGGGCAATCCATTCCCTGTA AACACAGGTTCATCCTCTTTACCCTTTTATACTTAACTTTACATAATGTATCTCACAAACTTCTGCCAAG TTGCACACTTCATCGTGCAAAGCCGTACATCTGGTTTTATACAGTGGACATACATGTACATTGCTCATCC AGTCTCTTTTCATCCACTCTGCTAGGATTGAACATTGCCACCAACCTAGTTCATTCTTTCCAGCCAGGGT GTGTTCCACTCACTTATCATTCATAAAGTGTTTACAAGATTTGTTTATGTGGAATTCAACCCTGATTTTC ACTGCACTGAAAGTTCAATGACTGTAACTGACAAGTTTTTTACTGTATTATACAAAAGAGATTTGTGTCA GAAATGCAGCTGTTATCACAGTAGCAATTACTTCTGGTTAATTTGGTTATCAGTTATTTGTTTCATTTTC AAAATTTGTTGAGTTGTTTATTGAAGTAATAAATAATTGCAGCATAAAGTGGACTTTGGTAAAAAGAAGA AATCTCAGAGGATACATGTATTTCATTCACAGCCTCATGAAAAGAATGTATGTAAAATTAAATGAAGACA ATGTATTGTGTTGAATGAAATAAGAATGATAGTGTCTAAAAAGATGTTACACATTACATACAAGATGTGT TGATCTGCAGTTTAACTTGTGTGCACGACATTTGAGTGGATTGAAATGACCCCGTGAAAATAAAGCTTCT CCTGTTTTAATCCGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds