Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030971963.1 PREDICTED: Strongylocentrotus purpuratus R3H domain-containing protein 2 (LOC580614), transcript variant X1, mRNA TATGAGCACATAAAACATGCATAATTCTTTAACATCTTCAGTAGATTTGTAAAATCAAAAATGTATTTTA ATGCATTGATTGCATATTTTACAAGTTCTCTGATATATTGAGATATGACAACAATTCCCTTCAGATGAAT AATAGTCTTATGATGTAATCCAGTTAATACTGTTTAAGTTGGAATTAAAAATGGTATTTGGGCAATTGAA AGATGAATGTTTTTATAATAAACTGCGCGTTTGCTTCCATCGATGAGCTGTGATAGAAATATATCAAATC TTTTCTTGTTGATTCATGTGCATTTGTCTGGTGCATGCCTCTGCATGCAGTGCCAGAACGATTTATTCCA CCTCTACGGCCTCATGGGAGATGACTTATTGAATCATGGCATTTTATGAAATCATTTTAAATGGGCGTGC CTTTGATTTGATGCACTTGTCATTGGCAGTGTTCAATCGGTCTGACTTTTTATTATCGTTCTATTGGATG ACAGCAGTCCTAATTGAGTGACATAGTTTTGTTGGAGTCCATGGATGTTTGGTTTGAAAGCACTGTCACA GACACTGATTAGATTTGAGTATGGTGCGTGTGTGTGTGTGTGTGTGTGTGTGCAAGTATGTGGAAGTGAA GGTTCATTATGATGACGGCAGAGATAAGATGTTTCTCCGTCAGCAAGCACATGCATTTTGAATGAAGGGA AAATGATTGAAAGGCTCTGGTGATCTCGCCGTCTTGCTTTCATCCTGCTTGCCGGACCATTGTTCAAATT GAATGCTGTTTAAACGAAGTCCTTGTCATTATACCGGCGACGTGTTCTCCATTCGTCCAACCGACGAGGT GCCGCATGCCCTTCTGTGGTACAGAAATGTGTGGGAGTAACGAGCGACTTTAGATCAGCGTGATTATTTG ACATTTAGGAAAGCACCCTCTGACCTTTATTCTCCCCCACTCTTACCATGATCCTCATTTCTCCGCTATT TGTTGTTTCATTCTCCTTTCTCCGTTGCTAGAGTGACAGCATTCGAGGCGGCTACCTTCCTGCAGGGAGG ACTTTCCCGTACGGAGCTGTTGAGTAACACTGCTGAAACAATTGGCATGTCACCCTCTACATCACCTTAA GGAACATGTGCAAGAAGACAATCTGTATTCAACATAAATTACCAAATCTGACAAGACATCTGGTAGAATG ATGCCTGTCACTAGCCATTGTTTACAAGAGATAGTGCTACAAGACTAGATCCCAAATCGCTGCAGCAAAC CCAAGAACAGGATGGATCAGAAGATTACGATAGGAGAGAAGAACGGCAAGGACAAGGTAGCAGCGGATGT GCCTGGGTCTCCTGATGTAGCGGAGATTCGAATCGATGTACCCGACACAACCTACAGTAAGACGGAATCC AGTAAACCAGAATCAAAGCCCCAAAGTGCCAAAAACAATGACTTGAAGAAACAGGACAGCAAGCGCAATG CCATGCTCACCAAGAAAAACTCCTTTGATCGCTCTTTTGATAGCGACAAGGGAACAAGGGACGGGAACGG GAAGGGGCGATTGCGCAAAGAGCGCTCCTTTGAATCTATGAAAAAGGACTCGCCGGGAGGGCGGAACTCG GATGGACAGGGCAAGAAACATGACTGTTCGGGGAAGTCGGGCGGGGGGCGCAACCCCAAGTTAGGGAGGC GTATGGGGTCGGAGGAAGGGGCCAAGTCGGAAGGGGAAGGGAACTCCAGATTGAGAAGGCAGACATCGCA AGAGGAGGCAGAGTCATCGTCGTCAAGACGGAGAGCCAATGCAAAGAAATTTCTTCTAAGGAGCCAGCCT GTTTCAGATGATATGTCGCCACCGTCTACTCCTGAACTCAATTTTGGCGAGGATGATAAGAGGATACGAA GGCTTCCTCACCAGTTGAGTGGTGAGACACCGTCTAACCGAGTCCACAAGCAAGCCAGTCTAGAGGCTCG CAGTGAGCCCGCTCTGTCAAGAGAACCTAGTCAAGAAAGAGAAATCTACACAGATTCCAGCGGAGTTGAC CTGCATCAATTCATTGTTGATACCTTACAAAAGGCCAATGACCGGACCATGCTACTCAAGCTTGAGAATG AGCTCACCAGATTCATACAGTCTGATGAGCACATGCTCAAGTTTCCACCCATGACGTCGTACCATCGGAT GATTGTCCACAGAGTTGCTGCCTACTTTGGACTAGATCATAATGTGGATCAATCAGGAAAGGCCGTCGTC GTCAACAAGACACCCAACACGAGAATACCCGAACAGAAGTTCCGGGAACATATCAAGGAAGAGCCTCTAG AAAGCACAGCAAAGAAGATCCTCAAGAGAGATACGGCCAGCTTTGATGACAAGGATGATGAGGGCCGAGA TAGGGGCGATTTAAAAGACGATAAAAGGAGCAAGTCCTTTGAAGAGAGGCATGAGGAATATGAGAAAGCA AGAGCCAGAATTTTTAACCAAGAAGTGACAACGCCGGAAGGATTAACGGTGGAACCGCCATCCAACCGAC CAAAGAGCATCCTCCAGGCATCTAGCAGGCAGAACAGTGGCACTTCCGATGACTCCTCCTCCTGCCATTG GCAGAAGGATCGTCCTTGGAGCAGCGTGGACTCGAGCGGTTCTGAACGGCCTTCTATCCCTGCTGTCACC AAGGCAAGCAGCTTTGCTGGCAGCCTCGGCCAGAAGGCACTCCTAAGGACAGACAGCAGTGCCAGCAGTC GATCCAGCTCTAGCTTGGGAAGCAGAGGCAGCCTGGGGAAACTACATCCAATGGATTCAGTTGATCGTGG AGCAACCAGTCCGCATGGTCAGGTCCGGGGGTTCCCCTCTGGTTTCCCCTACCAGCCTACCTTAGGTCCC ATCAGCCAGGCACCACCAGCCCCCTCTCAGCTCCCACAGCAGCCCACGTCTCCTTACTCCTCTCAACCCT CCCTCCAACAAGGCCCTCAGGTCACGTGGACCAGCTCGTTCCCCATGACCGCTGGGGGTCAGGCCTTCCA GTCTCAGCCACAGATACACCCTCTAGCAGCTCAGCAACAACAGCAACAGCAGCAACAACAGCAGCAGCAG CAACAGCAGCAGCAACAACATCAACATCAAGGACAGGCTGGCCAACCACATACTCATTCTGGAGTGCCGC TTATAGTTCAGCAGGGGGCTATGCCTCAACATACAGGGCCGGGGATCGGACAACCAGTGCTGTTTGCAAC TTCCAATATTGAGAATGTACCCCCAGGAAGCTTCATCATAAATCCACAAACTGGTTCTCCATTCCTGAAT CAAGATGGATCTCCCATGGTAGTACAAGCCCCCGCCCATACTCAGCCTCCATCAACCAATCAGCTGCAGG CTACTCCATCAGGCCACGCCCTTCCTACCCAAACTGGTCCACAGCTAGCGGCCAGCCAGGGAAGTTTAGT TCAACATAGCCAATCTATGGTCTCCTCATCCACCCACCCCGCCCTAGTGGGCTACGGTCAGTCCCTAGGC GGAGCCGGCGGGGTGGGGGGTTTTGGACAGACCCCTAGCCAGGGGGTTATTCACCCATCATACCAGGCAC ATCAGCACCATCATCAGCATCAGGCTGCAATGGTCCCACACCAGCACTCTGGGGAGTATACAGACATGAG CAGTCAGATGCAGGGTCTTACCCTGTCACGGCAGATATCGGGAGGTGACTCAGATCCTGTACCTGGTGGT AGTCAGCACGTACCTCTATCAATCCAACAACAGCAACAGCAGCAGGGTGGGGTACCACAGTCCCCTCAGC CACAGATGCCTCATCCTGGACCCCACCCACAACATCAGCAGCAACAGCAGCAGCAACAGCAGCAACCGCA ACCCCCAATCCTCCAGATGCAGCCCCAGCAAGGCATGAATCAACCCTTCATGATCAGGCAGGTAGGAGGA CCAGGGAGCGGACCTGGGAGCGGACCGGGAGGAGGAGGGGGTGGAGGAGGAGGGGGAGCAGGGGGTATGC CTACATCACCCCAAGGCATGCATCCACACTCTCAAGCAACTCAACAACCCCCTTCGCATCACCAGGGCCC ACAGCCTCAGGGGTTGGGACAACAGCAAGGCATTCCTCAATCACACCAACAGGTTTTATATAGTAGTCAA CCTCAGCAACCGGCAGCATACAGAGCAACCTCAGCTTCCCAGCTCTACAACCCCCAAGCCGTCCAAGGTA TGCCCCCGTCCCAAGCCCATGGTCAGCATCCAGTATCAAGTAGTCAACCGCCCCAGCTTGTCCAGCCTAC CGGAGGCATCATGTATCCCTCCAACCCGCAGCAGGGTGGAGGAGCTACCACACCCCAGGGTTACTATACA GCACAAGGCTTCCCCGCCGGCATGGGGATGATGTCCCCTCAGCAACCTCCCGGCCAGCCGCAGCCAGGGC AGCCGCAGATCATTTACCAATCCCCTATGGACCAGCCCTCCAGTTCTTCCCACCAGGGTGTACCAGTACT TTATCAGTCCCAGATGCACCAGGGTGGGGGTGCCCCTCCTCATTATGGCCCTACCCTAGCCAGCCCAGGG GATGTGCCACGGTCTACCTCACCTAGCGCCCAACCAATCCATGGCATGCCCATGACCGTTGTTGTTGGTC AGCAACAACAGCAGCAGCATCAACAGCAACAACAACTCCTGAGTCAAGGGCCTGGTATGCTAGGTAATCA ACGTCCCCAATCCCCACAGATCATGGGCCCTGGTGTGTCCTATCCCCAGTCTGTGCCTTCTACTGGTCCA GGTAGCACAGGTGGTGGTGGTCCAGGCCTTCTCTCACAGATGGGATACAACCCCTTACAGCAGAGGAGAG GGCTAAGTCTAGAACAGCATGGTGTCAGGCCAAGGGATTTGTTTGCACCGGGTATGAGTGGTATGCTACC TCAAGGAATACATAGTCCTGGAACATCCCCATCGCAGAGTCCTGGACCTCCTCTACAAAGACCTGGCATT CAAGACAAAGGTATGAGGCCTTCAAAATCATCCAAGCAATCCAAAGCTCCAAGGAGACAACGTAAAGTGC AACCAGGAGATAGTCTAATGGTTTCAGAGAGTCTAGAAATGCATGGTCCATTGGAGGTATTAGAAGTATG TCCATTATCAGCTGAAACCACGTGTGGTGCCCTATTGGCAAGCCTCGATGACCTCTCACGTATAGGAGCC GACCTGCGCTGGCTCCCCAACGCCACCCCAGCCTCCCAGGCCCTGATGTCCCATCAAGTAGACTCTGCAG ACAGGTGCTCAAACTACGCGGTCCTAGCTATATTCCCGGTCTCGGACGCCGCACAAAGCGCCCTCAGTCG ACCCATGAACCCCATTTACGTTCTTCGGTCGCCGGAACGAGACCACTCTGTGCGGTTATCGCTCGCCTCT TCATCGTCGTCGTCATCGTCACCACTGCCACCTATATCATAACCACACTGTTGTCTGCATGCCTAGGACA TTCATATATACCTAGAAGTCTTTGTCGTCGGGTGAAATTCTTGTCTAACGAATATGTTTCATGTTTTTTT GTCATTTCCTGTTCTCACTTCTATTCACCAAATCAAATGTGAGTTGTTTGAGTAACGCAGCTTCCTCACT AGTGCAAGAATGTTTTTGATTTCACAGGCTTTTGTAATGCTAGGAAATTCCATTTAAACAAATAGTAGTA TCAAATAAAAATGTAATGACTTACATGTAAAAATCATATGTTGCCTTTAACCTTAATGATGTGACCATCA ATAGGTCTGTTTCCACAGCACAGGAGTGTCCCAAAAGCAATATTTTTCAATCACCAAGCAACGGGGGTTT GATTTTATTTCAAAAGCCACTCGATAGAGCTGTCACGATTGTAGATTCTATATCGACGACACATGGGTGC AGCAGATGATGATGATTATGTGTTGTAATAAAATGACCTGAAGATTTGTCTGTGTCTCTCCTTCACAACG GATGATAAGCTATAATTACCATTATTCAGGGCCCT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds