Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030971965.1 PREDICTED: Strongylocentrotus purpuratus R3H domain-containing protein 2 (LOC580614), transcript variant X3, mRNA GCACATAAAACATGCATAATTCTTTAACATCTTCAGTAGATTTGTAAAATCAAAAATGTATTTTAATGCA TTGATTGCATATTTTACAAGTTCTCTGATATATTGAGATATGACAACAATTCCCTTCAGATGAATAATAG TCTTATGATGTAATCCAGTTAATACTGTTTAAGTTGGAATTAAAAATGGTATTTGGGCAATTGAAAGATG AATGTTTTTATAATAAACTGCGCGTTTGCTTCCATCGATGAGCTGTGATAGAAATATATCAAATCTTTTC TTGTTGATTCATGTGCATTTGTCTGGTGCATGCCTCTGCATGCAGTGCCAGAACGATTTATTCCACCTCT ACGGCCTCATGGGAGATGACTTATTGAATCATGGCATTTTATGAAATCATTTTAAATGGGCGTGCCTTTG ATTTGATGCACTTGTCATTGGCAGTGTTCAATCGGTCTGACTTTTTATTATCGTTCTATTGGATGACAGC AGTCCTAATTGAGTGACATAGTTTTGTTGGAGTCCATGGATGTTTGGTTTGAAAGCACTGTCACAGACAC TGATTAGATTTGAGTATGGTGCGTGTGTGTGTGTGTGTGTGTGTGTGCAAGTATGTGGAAGTGAAGGTTC ATTATGATGACGGCAGAGATAAGATGTTTCTCCGTCAGCAAGCACATGCATTTTGAATGAAGGGAAAATG ATTGAAAGGCTCTGGTGATCTCGCCGTCTTGCTTTCATCCTGCTTGCCGGACCATTGTTCAAATTGAATG CTGTTTAAACGAAGTCCTTGTCATTATACCGGCGACGTGTTCTCCATTCGTCCAACCGACGAGGTGCCGC ATGCCCTTCTGTGGTACAGAAATGTGTGGGAGTAACGAGCGACTTTAGATCAGCGTGATTATTTGACATT TAGGAAAGCACCCTCTGACCTTTATTCTCCCCCACTCTTACCATGATCCTCATTTCTCCGCTATTTGTTG TTTCATTCTCCTTTCTCCGTTGCTAGAGTGACAGCATTCGAGGCGGCTACCTTCCTGCAGGGAGGACTTT CCCGTACGGAGCTGTTGAGTAACACTGCTGAAACAATTGGCATGTCACCCTCTACATCACCTTAAGGAAC ATGTGCAAGAAGACAATCTGTATTCAACATAAATTACCAAATCTGACAAGACATCTGGTAGAATGATGCC TGTCACTAGCCATTGTTTACAAGAGATAGTGCTACAAGACTAGATCCCAAATCGCTGCAGCAAACCCAAG AACAGGATGGATCAGAAGATTACGATAGGAGAGAAGAACGGCAAGGACAAGGTAGCAGCGGATGTGCCTG GGTCTCCTGATGTAGCGGAGATTCGAATCGATGTACCCGACACAACCTACAGTAAGACGGAATCCAGTAA ACCAGAATCAAAGCCCCAAAGTGCCAAAAACAATGACTTGAAGAAACAGGACAGCAAGCGCAATGCCATG CTCACCAAGAAAAACTCCTTTGATCGCTCTTTTGATAGCGACAAGGGAACAAGGGACGGGAACGGGAAGG GGCGATTGCGCAAAGAGCGCTCCTTTGAATCTATGAAAAAGGACTCGCCGGGAGGGCGGAACTCGGATGG ACAGGGCAAGAAACATGACTGTTCGGGGAAGTCGGGCGGGGGGCGCAACCCCAAGTTAGGGAGGCGTATG GGGTCGGAGGAAGGGGCCAAGTCGGAAGGGGAAGGGAACTCCAGATTGAGAAGGCAGACATCGCAAGAGG AGGCAGAGTCATCGTCGTCAAGACGGAGAGCCAATGCAAAGAAATTTCTTCTAAGGAGCCAGCCTGTTTC AGATGATATGTCGCCACCGTCTACTCCTGAACTCAATTTTGGCGAGGATGATAAGAGGATACGAAGGCTT CCTCACCAGTTGAGTGGTGAGACACCGTCTAACCGAGTCCACAAGCAAGCCAGTCTAGAGGCTCGCAGTG AGCCCGCTCTGTCAAGAGAACCTAGTCAAGAAAGAGAAATCTACACAGATTCCAGCGGAGTTGACCTGCA TCAATTCATTGTTGATACCTTACAAAAGGCCAATGACCGGACCATGCTACTCAAGCTTGAGAATGAGCTC ACCAGATTCATACAGTCTGATGAGCACATGCTCAAGTTTCCACCCATGACGTCGTACCATCGGATGATTG TCCACAGAGTTGCTGCCTACTTTGGACTAGATCATAATGTGGATCAATCAGGAAAGGCCGTCGTCGTCAA CAAGACACCCAACACGAGAATACCCGAACAGAAGTTCCGGGAACATATCAAGGAAGAGCCTCTAGAAAGC ACAGCAAAGAAGATCCTCAAGAGAGATACGGCCAGCTTTGATGACAAGGATGATGAGGGCCGAGATAGGG GCGATTTAAAAGACGATAAAAGGAGCAAGTCCTTTGAAGAGAGGCATGAGGAATATGAGAAAGCAAGAGC CAGAATTTTTAACCAAGAAGTGACAACGCCGGAAGGATTAACGGTGGAACCGCCATCCAACCGACCAAAG AGCATCCTCCAGGCATCTAGCAGGCAGAACAGTGGCACTTCCGATGACTCCTCCTCCTGCCATTGGCAGA AGGATCGTCCTTGGAGCAGCGTGGACTCGAGCGGTTCTGAACGGCCTTCTATCCCTGCTGTCACCAAGGC AAGCAGCTTTGCTGGCAGCCTCGGCCAGAAGGCACTCCTAAGGACAGACAGCAGTGCCAGCAGTCGATCC AGCTCTAGCTTGGGAAGCAGAGGCAGCCTGGGGAAACTACATCCAATGGATTCAGTTGATCGTGGAGCAA CCAGTCCGCATGGTCAGGTCCGGGGGTTCCCCTCTGGTTTCCCCTACCAGCCTACCTTAGGTCCCATCAG CCAGGCACCACCAGCCCCCTCTCAGCTCCCACAGCAGCCCACGTCTCCTTACTCCTCTCAACCCTCCCTC CAACAAGGCCCTCAGGTCACGTGGACCAGCTCGTTCCCCATGACCGCTGGGGGTCAGGCCTTCCAGTCTC AGCCACAGATACACCCTCTAGCAGCTCAGCAACAACAGCAACAGCAGCAACAACAGCAGCAGCAGCAACA GCAGCAGCAACAACATCAACATCAAGGACAGGCTGGCCAACCACATACTCATTCTGGAGTGCCGCTTATA GTTCAGCAGGGGGCTATGCCTCAACATACAGGGCCGGGGATCGGACAACCAGTGCTGTTTGCAACTTCCA ATATTGAGAATGTACCCCCAGGAAGCTTCATCATAAATCCACAAACTGGTTCTCCATTCCTGAATCAAGA TGGATCTCCCATGGTAGTACAAGCCCCCGCCCATACTCAGCCTCCATCAACCAATCAGCTGCAGGCTACT CCATCAGGCCACGCCCTTCCTACCCAAACTGGTCCACAGCTAGCGGCCAGCCAGGGAAGTTTAGTTCAAC ATAGCCAATCTATGGAGTATACAGACATGAGCAGTCAGATGCAGGGTCTTACCCTGTCACGGCAGATATC GGGAGGTGACTCAGATCCTGTACCTGGTGGTAGTCAGCACGTACCTCTATCAATCCAACAACAGCAACAG CAGCAGGGTGGGGTACCACAGTCCCCTCAGCCACAGATGCCTCATCCTGGACCCCACCCACAACATCAGC AGCAACAGCAGCAGCAACAGCAGCAACCGCAACCCCCAATCCTCCAGATGCAGCCCCAGCAAGGCATGAA TCAACCCTTCATGATCAGGCAGGTAGGAGGACCAGGGAGCGGACCTGGGAGCGGACCGGGAGGAGGAGGG GGTGGAGGAGGAGGGGGAGCAGGGGGTATGCCTACATCACCCCAAGGCATGCATCCACACTCTCAAGCAA CTCAACAACCCCCTTCGCATCACCAGGGCCCACAGCCTCAGGGGTTGGGACAACAGCAAGGCATTCCTCA ATCACACCAACAGGTTTTATATAGTAGTCAACCTCAGCAACCGGCAGCATACAGAGCAACCTCAGCTTCC CAGCTCTACAACCCCCAAGCCGTCCAAGGTATGCCCCCGTCCCAAGCCCATGGTCAGCATCCAGTATCAA GTAGTCAACCGCCCCAGCTTGTCCAGCCTACCGGAGGCATCATGTATCCCTCCAACCCGCAGCAGGGTGG AGGAGCTACCACACCCCAGGGTTACTATACAGCACAAGGCTTCCCCGCCGGCATGGGGATGATGTCCCCT CAGCAACCTCCCGGCCAGCCGCAGCCAGGGCAGCCGCAGATCATTTACCAATCCCCTATGGACCAGCCCT CCAGTTCTTCCCACCAGGGTGTACCAGTACTTTATCAGTCCCAGATGCACCAGGGTGGGGGTGCCCCTCC TCATTATGGCCCTACCCTAGCCAGCCCAGGGGATGTGCCACGGTCTACCTCACCTAGCGCCCAACCAATC CATGGCATGCCCATGACCGTTGTTGTTGGTCAGCAACAACAGCAGCAGCATCAACAGCAACAACAACTCC TGAGTCAAGGGCCTGGTATGCTAGGTAATCAACGTCCCCAATCCCCACAGATCATGGGCCCTGGTGTGTC CTATCCCCAGTCTGTGCCTTCTACTGGTCCAGGTAGCACAGGTGGTGGTGGTCCAGGCCTTCTCTCACAG ATGGGATACAACCCCTTACAGCAGAGGAGAGGGCTAAGTCTAGAACAGCATGGTGTCAGGCCAAGGGATT TGTTTGCACCGGGTATGAGTGGTATGCTACCTCAAGGAATACATAGTCCTGGAACATCCCCATCGCAGAG TCCTGGACCTCCTCTACAAAGACCTGGCATTCAAGACAAAGGTATGAGGCCTTCAAAATCATCCAAGCAA TCCAAAGCTCCAAGGAGACAACGTAAAGTGCAACCAGGAGATAGTCTAATGGTTTCAGAGAGTCTAGAAA TGCATGGTCCATTGGAGGTATTAGAAGTATGTCCATTATCAGCTGAAACCACGTGTGGTGCCCTATTGGC AAGCCTCGATGACCTCTCACGTATAGGAGCCGACCTGCGCTGGCTCCCCAACGCCACCCCAGCCTCCCAG GCCCTGATGTCCCATCAAGTAGACTCTGCAGACAGGTGCTCAAACTACGCGGTCCTAGCTATATTCCCGG TCTCGGACGCCGCACAAAGCGCCCTCAGTCGACCCATGAACCCCATTTACGTTCTTCGGTCGCCGGAACG AGACCACTCTGTGCGGTTATCGCTCGCCTCTTCATCGTCGTCGTCATCGTCACCACTGCCACCTATATCA TAACCACACTGTTGTCTGCATGCCTAGGACATTCATATATACCTAGAAGTCTTTGTCGTCGGGTGAAATT CTTGTCTAACGAATATGTTTCATGTTTTTTTGTCATTTCCTGTTCTCACTTCTATTCACCAAATCAAATG TGAGTTGTTTGAGTAACGCAGCTTCCTCACTAGTGCAAGAATGTTTTTGATTTCACAGGCTTTTGTAATG CTAGGAAATTCCATTTAAACAAATAGTAGTATCAAATAAAAATGTAATGACTTACATGTAAAAATCATAT GTTGCCTTTAACCTTAATGATGTGACCATCAATAGGTCTGTTTCCACAGCACAGGAGTGTCCCAAAAGCA ATATTTTTCAATCACCAAGCAACGGGGGTTTGATTTTATTTCAAAAGCCACTCGATAGAGCTGTCACGAT TGTAGATTCTATATCGACGACACATGGGTGCAGCAGATGATGATGATTATGTGTTGTAATAAAATGACCT GAAGATTTGTCTGTGTCTCTCCTTCACAACGGATGATAAGCTATAATTACCATTATTCAGGGCC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds