Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030978121.1 PREDICTED: Strongylocentrotus purpuratus uncharacterized LOC115921070 (LOC115921070), transcript variant X3, mRNA CGGGAAGAAGTACACACAAAGCGACGTACGGTACTGTAACGATCCAACTGAACACACATCGCAGGTGCAG CATAAAAATTGCGCATAGCGTGCATGTACGTATAGCGCAAGTACCAACCATGGTGAACAGAAGATCAGAG ATCGGAGATCCTCGTATCTCATCCAGATTCCAGACTAGTATTGATAAATGCCAAAGCCAAAGGGCATGAT TGAGTTGGATTGGGATGGAATCTTCATCAGCATCGGAAGGAGCTAGCCCTGATGTCCGTCCTGTTATCTG TGAAAGTTTACAAGACCTGACTGATTGGGGGGACCTACTAGGCATTTGTGAGAAACATGCCGAGCAGGTT GTACCTGAGAGAAATGATGTTGACCAGTCCAGCCAAGAAAGCAGTACAGAGGACCATTCACGTGCAAGAT CAAGTCCAACAGGAGACATTCCAGGAAACGGCGCTTCAAATCTTCCACACAAAACTCCACAGTCGGACTC CAGTGTCATTCCTAGTGTGGTCCACACAAATGGGACTGCAGTGAGAACGCGGAAAAGAATACGCCATTCC TGGCCTGATGTTTCCGTGAAGTTGGGCCAAGACGTGACATATAATTGTTTTCCACATGAACATTTCAGCT TTGCCTTCAAGGAGGTTATATTTAGAGAAGAGAAAATACAAGAAGAAGATGATGAAGATGAACTGCCAGA AATCAGCTTCGTTCCATCTCCAGAGCCGACCTTGCCACCCAAAAAGGAGAAGTCATCTCACAAGAGACAC AAGGTGTTACATAGCAGAAAGGCTGATAAGAAAGCATCTGTGCTCACAGAGCAGAGGGGCAAGAACACAC CCGTCGCTCAACAAGGTCACTGTGAGGACAAGAAGGACAAACTCAAGGAGGGGCGGAGCTCTCCGCTTAT CGCATTAGCTGTGTCTTTGAAGAAGCCAGGGGTGACCAAGGAAAGGAGACTTTTACCCAGTGTTGTGACT AGTGGAGGAACCACTGCAGGTTCCCAAGGTACAACCCTACATGCACAAGTAGCTACCCTACAGCCGGGAG TGCAAACTTCTGCGAACAAGGGTGTCCACCCTCAACAGAGCTCTGGCGCATCAAATGTCTTACAGATTCT TAACACCCCGCAGGATGGGCGGCGTACGCCAACTCATTCAAGCCTTGTCACAATGTTGCCCCCTACCCCG CCAAACGAGCCAGTGGTGGTCCAACCCGTGTCCCAAACTGTGTCCAGAGTTGTGCCTAAGGGGCTACCCG GACAGCTTCCAATGCAACGTGTGCAGGTGTTTGTGAAGCAAGTGGCTGCCCAACCATCGAAACCGCTAGG TGTAAGTCCGTTCTCATCGCCGACCTTTCGGATCATGAAGACGTCCCAGATTCTCACCCCGCCGATCGAC AAGCGTGTTGCCCCTGTCTCGTCTCCTGCGAAGCAGCCAGAACAGCCATGTGGAAAAACAGAGCAGCCGC TTCAGAAAGCAGATCAGCCCCCCGAGAAACTGGAACACCCCTCTCAAAAATCGGGAGAACCTCTCCAGAA ACCAGAAGAACCTCATGGATGCAGACCTTCAGAGATATCCTCAGAGACACCAGTTACGAAAGACCTCAGC AGTACATTAACCTCCCTAGAGGACTCCTCAGAAGCAACCACGAAACCCTCACTTGCCGTTGCTACGGATG ATGAAGCCAAAGCGGGAGGGGATGAAGAGGAGATAGATGTTGGTGAGACTCTGATTACCACCTCCCAAGA TGAGACAGACTCGCAAGTTGAAGTCGTCGAATCGGAAGTGGAAATAAAAGAAGATACGAAAGAAGTTTTG TCTTCCTTGAAGAGGAAAGCACCCTCTAGCCCATGTTCAACACTTCTCAAGATCAAATGTGAGAAGATTG ATGCCGTTGTGCGAATCAACAAAACTAATGAAGACCTCTATCGTGCCGCTGCAGAACAAGGCTGCTTCTT CAACGTCGTGGACAAGTCCAGCCGACTGGGGGTGTGTCCTTGCGGCCGTGCCAACGCCTACGATGCGATG ATAGCTTGCGACAACCCACAGTGTGAGATAGAGTGGTACCACTTTACATGTGTAGGGGTCACTAAGGTGC CAAAGGATGAGTGGTTCTGTCCTTTTTGCTCAAAAGAAGCAGCTGAAACCTTGAGAAAGAAGAAGGAGAG AAGGAAAGAACAGCGAAGGAAGAAGAAAGAACTAGAATTGAAGAGGAAGAGGATGAAGAAGCCGCAGCAA GAGGAAGCAGGTCTATGTCCCTGTGGCCAGCCCAACTCCTGGGACCGGATGATAGCATGTGATGGTCGAG ACTGCTCGGTGGAGTGGTATCATTTCCGTTGTGTGGACGTGAAGAGTCCACCAGAGACGGAGTGGCTCTG TATCTTGTGCAGGGATAGTGTTCAAGATCCCAGCAACATTCCTTACGTAAGAAGGAAAAGGCAGCATCGA CCAATCAAGTATTCCATCTACGGGGAAGGCGGAGATGGAAGCACCGATGAATCTAAAGAAGCGATGGATT GGAAGGAGGACGAGTCCAGTGACGACTCCGGTGATTCCGATGACACTTCCAACGACGAGGAAGGCGACGA CCACGACCACGGTGACGATGGCAGGAGTCGTGTCCGGGAGCGGGCGAGAACCAAATGGAGAGAGGCTTTG TCCGAGGAGGTCGACATCGAAGTCGATTCTAACTCGTCCGATGATGAAGATGACGACGATGAGCTGAGTC GGAGCAGACGCTCAAGGAGGAGTCGACATAAAAAGATTGATTTGGACTTTGAGGATGGGGCGGAGTTTGA TGAGGACGTGGATGGAAGAGGGGATGAGACAGTGAGAACTAAAGCCACCCCGAAGAGGGTTAGAACAAGC TCGGGTGAAAAGAGGAGACACAGTTCAGGTGCTCAAACCAAGGAATCTCCAAGGAGGGAAAAGGACATGG TGAAGGTTTCAACCAATTCTGGCGATCAAGGCTCCGAAGCTGTCAACAAACAGAAGAATGTATCAGAAGG GCGCTTCCTAATCCGAGTGTGCAGCGCATGTGGTCAGGAGTTCATCGACCCACTGACTGAAGGCAGTCAG TCAGCAAACCAAGAAAACCCTGCCGCCGCCGTCCTCTGCCGTCTGTGTGTGAACAAATCCAAGAAAGGAG GCGAGAAGTGCCTCCAAGCTGGCATCCTCCTGCCCCCCTCTAAAACCAAAGATACCATAGCCGCCACCGC CACTCCCAGTCCTGCCGCAGGGGGTCAAGATGACCCTCCGAACTCACCACCGGGCGAAGCAGGGGCGGGG AGATCAACGCGTTTCCATGAGATTGTTGCGTGTAAGGTCTGTGGGATGGGCTACAGGACAAGAGTGAGTT TGTTGATTCATATGAAAGCCAAACATCTGGGGCATCTCAGCAGCTTTGAGTGCACACCGTGCGATCGGCT CTTCATTAGCCAGGAGGAGTGTGAACAGCACATGGCTTCGCTTCATCATGTATGAACAGCACATAGTGGT GCTATGTCATGTGTGAACAGCACGTGGCTTCGTAAGATCATGTGTGAACAGCACATAGTGGTGCTATGTC ATGTGTGAACAGCATGTGGCTTCGTAAGTTCATGTGTAAATAACACATAGTGGTGTTATATCATGTGTGA ACAGCACATGGCTTCGTAAGATCATGTGTGAACATCCCCTAGCCATGTTTCGTCACTTTGAAGCAATGAG TGAGAACGGCACAAGGCCACGTCAGTGGTGAACACAGCACATCGATAACATCTATATGTTGTATTCTAGA GTATGAACAAGCCTTTTCCAGGCTAGGTCATGTGTGAACATCAATGAATCATTTTAGAGCATCCAGGATT GGGTGGTGTGAACAATACCATGTCAAATCATATGTGAACCTGTAGGAACTGTGGATGTGTTCACACCAGA CAACTTATTATCTTTCTGCACATTAAGGATTTATCGCGGTGTTAGCAGCTCTTTGGATCATACCATCATG CTTGACTCTCAGGGATCATAAACCTCTGTTTGGAGCCACAAGGGCAGTAGCTCATGTACTATACCACAGA GTTAACGCCCTTCTGGCTCTGAACTCATGTTAAGGCACTCTATCAGAATGACACATAGCACACTAAATTG TACACCGATCGTGGCAAACTTGGTCCCTAGGTCAACTTGGACTGGGAGGAATTTTGGCTAGATTGTGCGA GAAAACTGAATTGATCACGAACGCATGCCTATATTTGTGCATGAAGTACGTATTTAGAACAGTCAAATTC AAGATTGTTTTATCTGATTAGAACCAGAAGGGCATTAACTCTAATTGTTTTACACAAAGTTTACACCCTT CTGGCCCCTAACAGATGATTGATGGAAATACATAAAATGTGTAAAAATCTATTCTTAGAAAGGTTAGGTT GACAATTTTAGGGGGTAAAATGCTATAAAATATGAAATTTATGGCTATTTCATTGGTCGGTTTGAGTAGT ATCCACTTCCAGGTGTGACTCCTTATCACCTCGTATTGCCGAGTTCGGCGTAGTGCTGGGGGACGTTTTA CAAAACTCGTCATCAGTGACAAATGACAGTTTTTGTTATAAGCTACTGAAATCCTTGCATCTGATTGGTT ATCAACTGATTTGTCACTGATTTTTGTCATTTGTC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds