Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT111077.1 TSA: Strongylocentrotus purpuratus WHL22.485896.0 mRNA sequence ATGCAATGTAGACAATGCCCGTGTAGTAACAGGGTGCCTGTATTTAGTCGCCGATCGAGCTAGCCTTTCA ATCCCTGCATAATAATATATCCAAGGGAAGGCTGCACGCATTATATATTACTCTGACCAACCAGCTGGTG TACAAAAGCGGCGACATGCAGGCTCTGGGATGTTATCATATTATATGATGTGAAAAAACTGCTCTCTAAT CATACTGCGGAATACATACATGAATACGACGTATTTTGTTGGCGCCCGTGTGATGTTCTTGCCTGTTATG TTCGCCTCACCAATTTACTGATCTATTTTGGACTATTTGAGAATATATTCCAGCCACGCAGCAGAGATAA AGATAAACATCATCAGAGTGTGAGATATTATATATGAGACATACATAGATGTGACCATCGTGACTAGAAG CCTTTCAAATCGGTGTCTCTCCATCATCATACGCCATCCGCCAGCTGTACGATGTACGGGAACACACAGC ATTCGCATGCATGCAGCAGCTAACGACCGACATAACATTACTTTTCTTGGACGCCGAATTGCGAACGGCG GACGAGTTTTGGATAACGGAAATACACGAGCAGAGCCACCGCGGATCCATATACATGCGATTGAGCACCA TCAAGTGTACAACGGCGGAGGGAGGATAGGATAGCGAGAGAGAGAGAGAGAGAAAGAAGAAAAAAAAAGC TCGAACTCTGAATCGAGATTATGCGTCATCAGTGCTATGTCTAACATTCTCAACGCTTTGTGATTCAACC TTCCTTCAGGTGCTCGTGTAAAAACGGAGAGACTCAAAAAAGGATAAAGCTCTTCTCCTTGTGTAGATCA TTATTTTCTGCGATCACCGTCAGAGCCGAGTCATCTCTAAAGGGATATGTAGATGGTGGTGGTGACTACA ACGTTCACCATTTCGAGCGAGGATTATCCCGTCATTAATGTGGATTAAGTCTTGTCATATCGGAATAATG CTTTGTGTTTATTTCATGAGTTAAGGATTCATGTTTACTTCGTTTTGACATGTGATCGCTGCCATTAACA ACTGCAATGGATTACGCACGTCAGGCGACAGTGGTGTTGCTTTTCTTGATTTCGCGCGCTTTTGTGTCGT GCTTGGATCAGGAATCGGACGCGAATCGGTGGTCGAATGGCACGTCCTCCGCCAAGGATGACGAAAGCGA CGTTGACCTCGAGACGGACCATGGGGATGATGAGCTACCAAACGAACCAGACCTCGTTGAGAGAGGAATC AAAGATTTATGGATAGCTTCAATGGTTTTGATTATTATCTTCAGTGTGTCTGGTAATGGTTTGATAACAT ACGCGGTGTTCAGGTATAAGACGTTACGGAGACCTTGCTTCTTCTTCCTCTTCAACATCGCCCTCGCCGA CCTCGTCCGATCACTCGTTTGCTTCCCATTCGTCATCACCTCCGTAGTCGCATCCGACTGGGTCTATGGC AAGTTTTTATGCGAGATTCTCGCGTTTTTTAATGTTTATCTTCCCTATGGGTCATTATACACACTGTGTT TGATCAGTATCGAGCGTTACGTGGTACTGAGATGGCATCGGTTCCACCGACAAAAACTCAAAGGACTTGG AAGCCTTTTATGCGTGTTATCAGCATGGGCTCTAGCAGTATCCACCGCATTCCCACCAGTATTCAACTTT GAAGCCTATGGTTACATACCCACGGAGCACCAGTGTACATTTCGGCATCGCTCTATAAACAGAGCCAACG ACACTCTGCTTTTCCTTCTCTTTTTTGTACTAGTGACGGCTCTCATTCACGTCTTCTATCTTCGTGTATT CTTCTTCATGCGCGCGCATCGTCGAATGCGCCCGCTGGAATTCATCCCAGCTGTATCCAGTACTTGGACC TTCTACGGGCCTGGTTCGACGGGCCAAGCCGCTGCGAACTGGTTCCAAGGGTTCCGCCAGGGCCCCACCC CTCCTCCGTTGGTGGGCCTGGCCCCGCCCTCTGTCCGCGGTGAGCCAACAGTACCTAGCGCAGACTTTCA CCAAGAGGAAAAAGTAACGAGACTAACCTTTTCCATCTCGGTAGCTCATGGGGTGATGTGGTCACCCTAC ATCATCTATTCATTCCTGAAAGTGTTTCGTGCCAATCTCCAGTTACCTATCGCTTTCGTCTCCATAGCAA CGTGGCTGACTTTTCTCCAGGTGTGTGTCAATCCTATCTTATGTATGGTGCATGTCCCCGAGGTACGTCG CTGCGTGCTCGCAGCTTCCTCTTCAGAGGACGTGGAAAGGAGAAACAGAGACCAGAGAAACGGTGTGATT TGACGTCATCTTATGACGTAGGCACCTTCCTTTTGTAGATGGACATAGTTGTTTCATAATTAACTTATGT AAGTTTTCAATCAGATCAGAGAGATATAGAGATAAGTGAATTACGCTGGACGCTGTTCAAAATGACTCGT TTTGCAATATAAAGTTATGTGCTTTGTGCAGCTTTTCATAGAGGAAGAATGATGTATCATTATTATTATT ACGAGCTAATGCTCTGTATGCGAATTAAAACGAGTAAGGTGGTAAACACTACGTGACTTTTTAGCACAAA TCATGGTGAGACTGGAGCGCGAAAATATATCGATCACTATGTACTAACGGTCTTGTCATGACGAAACAAA TCTATCATTCTATCACAGTTATTTATATCGAATCGCACACAATATCTGCAGGGTATATTGCTGTTTTATC ATCAGGAAACGTTGTAAATAAAATAAAAACATAAGAGGAATTAAGAAAAAGAAATCAAGGAATTTACAAT TAAAATTAGTGAAAAGAGTTTGAAAGATTAAAGATAAACAACATCATTGAACAAATTAAGATGTTTAATC TATGTGGGTTTTAGGGTATAGCATATAGAGAGTGATTCCGTGACTTTTCATAGTTGTTGAAACTTGGAAG TGATATTGCAAAAGGCTGACTTAGTTTGAATAATTGAATTCATATTTCATCATGTATTGTTCTATTTTGT TTAAATGTGTCGTCTTGATCCCAGCACATGATTTCATTTATTGTCACTCAAGAATTCATTGATATTTATA CCGAGTAATCTCCGGATGACGTATATATGTAAGGAGATTAAAGTAACGAAAGTACAAAACCATACTGGTA CTAATGTATATCTTCTCACCCCTCAAAAGAAAAGTATTTTTTGTCCTTCTCTATAATAGATATATAATTA CATGTCATCAGATGGATTTCTGCTTATAAGTTATGCGATATACTTTTTAATATGATTATAAACAACAAAA TGAACAAGGTACTTCATCTGTCAAATTTAAAGACCACATGTGCTTATTTAACAGTTCTGTATTATAGTTT TATTTTTTTTTAACAAGTCCAGTAAAAACAGTTTTATCATAATTTTTTAATCGGGAAATTTTGAACGATG TATATCTCTTTTTTAATGAACATCACGAATGATAATCATGGCTTCCTTTTTATCATTCAATATTTATTAA CGTGTTTTTGTATCAATTTGTTATTCACCTGTTCCCTCATAAGACGCCACTCTACTGTGTGATGTATTCT AAAATCATTCTATTGCTATTTTACACTACAATTTTAAGATATATAGGTTTAAAGAAGCGTGAATACGTAT GCTCCACAGAGAGCCAACATTCTGTCGAAAAAAGTAGACAGGCTGTGGAGTGTCCACGAATACAACTCGA GCCCGATATTAATTTATGGATTGTAAAGCGACTTATGTTAAAAACAGTGTGCATTATTATTAAGGGTACA TGTATGACGTCATACCCGTCTGTGTAAGCGAATTGCGTCTTTCCTTGTTCTTTTCATACATGTACAATAT ACGACCACACTTGGTTGATGATAAGATAGTATATGGACATAATATTGCACTACTGTGGGTATTGTGTTCT CGATAAACAGAGCTCTATGTTATTTTATGTACCCTGCACCATGTTTTGCATTATGTTTTGGTAATGATGG ACAATTAATTTTCAAATTAATAATCAGACGAATCTTACACTGAACCTTCAAGAATATAAAAGGAAATTAT ATGATTGGAAACGGATTAAGAGTTAACAAATCATTGGATAAAATAATAGATGTCACTATACCTGATTTGA AGTTATCATTTTTTTTCTTTATCTACGAATCAACTATTTCACTTGTCGTACCATGCATGTACGGATTGAA GTTTTCTTACGCGTGGTCTAGGACAAAATTGTTTCCTACTTTTTTTTAAACAACATTTTATTACAAAATG GTTAGCGTAATTCGTGATTTTCAAAATTTAACGTTACATTATACCTCAATAGCACTCAAACCTGCATGGG CCCTGTCTTACAGAGAGTTGATATCAATCGCAACTTATTTGTGATTGACATCAATCGCAACTATGTACAT AAGAAATATGAGACTACAAACTTGCGATTGATTATAGAACTTGCGATTGATTTGGATCAATCGCAACTCT TTGTAAGACGGGTCCCTGATGAGATAGTGATAAGAAGGTAGATTTTAGTCAATTTAGTGCATGCATGGAA CAATATTTCAAAGCAATGTTGGTTTTACTTTTTTAAATCTCCTGTGTTGCTCATCGCTGTACATGTAGAA TGAAACCAAATATTGTGGAATTGGAGTGAGATACGGAGTAAATGGAATGTTGATTATTGCCATGTTTTTT AAATTTTTATTTTCTCTTTTTACATTGTAGAAGGGTGTAATTCTGATATTCACGTATGTAAGCCAATCAT GTCTGTTGCAATATTACGAAATGTCAAGCGGTGTGCTATAAAATGTGAATATACAAAGAAACAAATGAAT ACATCGGTTTTAATTGTCATTATTATTGAGCTGTAGATGGATTATCCAGACGTGAGAACGAACGGCATTT CAAGACATAATTGTAATCTCTTTTTATCTTGGCAAGATGGTTTCAATGTTTAATCGTGCTTGTGGCAGTA GACTTGCATGTTTAAACGTGAAAATTAGACCATCATTGCAAAACTAAAAATTCCTCTCCATTGATATGTT TAC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds