Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030997031.1 PREDICTED: Strongylocentrotus purpuratus neogenin (LOC100893476), transcript variant X2, mRNA AAATTAGTGACGCCATCGCTAAGAAACTGCAAATGAATGGGGATCTTACGTTTGAAATGACCGTCGCACC TTCGGAGGAATTTCGCAGTTTTCACCAGGTAAAAACAAATTTTCAGTATAAATTCAAGTAGTAAAGGCAG ATCAGCGGGTAGGAGCGTAACAACCGCATGAGTAACACGCAGAGGAGTCGATCGAGAGCTGAGACGTAGT GGAGTGGACCGACGCAGAGTTTGGTGTGTGGGACTGTGCAGCCAGACAGACCGGCCAGTAGGAGCGGAAC AACTGCATGATCAAGTAACACACTGGTGCTGAGAGTAGGGTTGTTCACGTAGGTGTGTGGATTGGCCAAC GCAACATTTAAAGCGTGGGACTGTCCAGGGACTACTAAAGTGAACGATATTTTTTTACTGGAAGATATTT TTGGACAAAAGCAGAGTAATTGGCCACATGGTGTTGGTACTGCTTTTATGTACTGCAAAGGAACCCGGAG TGGTGCTTATACTTCAGAGGAAGGAATTTTGGACAAAGTCATCGAATCTCTCTGTAGATGTTTAGGATTT AAATCGATCATCATGGCCAATCTTCAACTCAACCAAGTCTTCATATTCCTCTTGACCACCTTATTTATTT CAAGCTGCAGTGCAGAATTAGTATTCACAGAAACCCCGTCAGACACCAATGCTGTTCTGGGGGATTCGAC CGCTTTCCACTGCGCGGCGTACGACCTTCTCCGGATTGGAACAGTCTACGTGGAATGGAGTCACAACAAC GTTCTTATCATCCCGACGGGCCGTTTTTTTGTCTTCCCAAACGGAACGCTTTATATTTCGACCACGCAGA ACGGGGACGAGGGGTTCTATAGCTGCACGGCACGGATCGAGGATTCACTTGGTGGCGTGTCGGATACACA GACACCACCCGCTGCCTCGCTCTACTTTGCATTTCTGGATGATATCTTCTACCACCCGACCAACATGACC GTGATTGATCTGCAGTCCGCTCCAGCTTACTTCCAGTGTATCACCGGTGACAGTGTACCTCTAGCCGTCA TCACCTGGGAGAAAGATGGAGTGCCGGTGATCGATGACCAGATCAACATAGTCATCTACTCCTCCCAGTT CGGGGCCCAGGATTCCCTCAAAGTCTCAGGAACCCTCCAAATCAACAACGTCCGTTTGGTCCACGCCGGT CAATACCAGTGTGTGGTCACCAATCCCTTCCTGCCCTACCAGCCCATACGGAGCCAAACGGTCACTCTGG CCGTTGAACCCAACCCTGGCGCCCCATACATCAGTCTAGCCCCGACCAGCGAGGTAGTCCCGACAGGGCA AGCGGCCATCTTCCCTTGCGTCATCCTGGGAGACCCGTTCCCAGTCATCACCTGGCGCCGGGAGGGAGCA GCCCTAGACATCATGAACTCCACCGAGGTCCAGGTCCTCCTGAACGGTTCCCTGCGGTTCTCATCCATCA CCCAGGCCCAGGAAGGGAGCTACGTTTGTACTGGGACCAGCAGAGTGGGGTCCGTGTCCGCCCCTAGCAT CACGCTCTTCACAGCAAGTATGGATTGGAACTTTGTGACGGAGCCCACAGACCTTGATGTCCTAGAGGGG ACACCTGCAACCCTGTTCTGCCGTGCTCCGCTCAGCAGACCTACAGCCAATGTCACGTGGTTCAAGGATG CCATCCTCTACACCCCACGAACAGGAGCCCAGATTCTGGATGAAGGTGACCTTTATTTCTCTGGAGCTGC GAAATCAGACGAGGGAGAATATTTCTGCGTGGCCAGCAACGATTTTATTCCTCAACAAGTGACGTCACGT TCAGCAACCTTTACGGTAGCAGTTGGAACGAGCATTGTAATGCCTCCTAATGGCACAGAGGTGGTTCTGG GTAACGAGCTGAGTTTGATCTGCGAGGCAGAGGGTGACCCTAAACCTACCGTCACATGGTACAAAGATGG CCGACTTCTGACGCCGGATGAACGCACTACCATTGGGTCCAATGGGTTACTTCACATCCGAAACATTGTC GCTATCGATGAAGGAACCTACCAGTGTGAAGCAGGCAACCAATACAACATAGACACAGCGTTAGCATTTG TAAATGTCCTCATTCCACCTCAGATCACATCAAGCCCTGGCGAGGTCACCGTAGGTCAAGGGTCACAGAC CACCATGACCTGCACCGTCATCGGAGACCCCGTCCCAACGGTCACATGGTTCAAAGACGATGTCCTACTC CAGGTCGACCCCTCCGGCCCGTCCTATGTCCAGACCAACGCCGGACTGGTGATCACTGGAGCGCATCCTA TGCATGCTGGAAGTTATCGTTGCCGAGCAGAGAGCAGCGTTGGGATGGCCGAGGCTACTGGAACGCTGGT TGTATGGACTGTTCCCGAGTTCGTTGTGGAACCAGAAAACCAGACTGCTCATGAAAACATGGTAGTAACC TTCCAATGCAATGCCACAGGCACGCCGACTCCAGCTCTCTCCTGGTCGTTCAATGATGGCGCTCTACCGT CCTGGGCAAGTGTCGATGAAGAAGGAAGAAGACTGAATATCGCAGACACTCTGCCCGAGAGTGCTGGGAG GTACACCTGCGAGGCGAGCAACGCTCAAGGAACGGTGACCGTAGATGCATACCTGGATGTGTTCGTTGAG CCCACCGTGACACCACTCCCCAACATGACCCTCCAAGCCGGTCAACAGCTGACCGTTGCCTGCCAGGCCA GTGGTCATCCAGACCCTTCCTACACCTGGCTGAGCGGTCAAGACACCTTGCGGTCCAGGGGTAGGGTGGC GGTGACCGATATAGGGGTTCTGACCATCGGAGAACTGAGCAAAATTGACCAAGGATGGTATAGCTGTGTG GCCTCCAATGGTGTCGGCAATGGCAGGGAATCATTCTACCTTACTATCATTGGTGTTCCTGGTGAGCCTG CTATCTTGGAAGCTTATCCTCTGTCTGCCACTATGGTGTACATGGTCTGGATTGCTGGGGGAGATGTTGC TGATACAACTCACTTTCAGATTCAGTATAGGCTGAGCACCTCACCAACTTGGCTGACCTATGTGGATAAT CTGGAAGCCATGCCTGGTAACCAAACCTACACGCTTCGCAGCCTGGATGAGAACAAGGAGTATCAACTGA GGGTGGTGGCAAAGAACGCCGTCGGTCAGATGCCAAGTACCCTGAATGTCGTCACCACACCTTCTGTTAC AGGTCCATCATCTCCTAGGAATTTCCGTGTGACGTCATGGAACGGGACATCAATCAGCCTCATCTGGGAA GTCCCGGCTGATAGGAACGCACCCATCGAGATCTACACGGTGGAGTACCACAAGACCAACACTACTGATT TCATGATCAAAGAGATCCCAGGCAGCGGTCAAGCCACCATTACAGCCATGGTAGGTGGCCTGAGACCACT GACCAGCTATCAACTAAGGGTCAGCGCTACGACGCTACACAAAGGAGAGAGACAGCTTGGTAATCACACA GACTATGTGGAGCAGACCACTGGCACAGCAGCGCCTGACGGAGCCCCTACCAACCTGACCGTTGAGGCTT CATCCTCGACATCGATCAGTGCATCATGGGAACCTATTCCTGAACTCTACCAAAATGGCGCTATCACAGG CTACACGATCATGTATAGAATATCTGGCAGTTTGCAGAACTTTACTGTGAAGGAGGTCACAGGTGCAGCA AACTCTGACCTCTTGACTGGCCTTTCACCTTGGACGACCTATGAGGTCAAAGTTCAGGGGGTCAATCGAG ACGGCACAGGCCCTGCCAGCGAGAATGCTGTGGCAAAAACCTTAGCTGATGCACCAACTGATGTTCCACA GAATGTAGTATTGTCAACTCTCAACAAAACTTCTATCAGTGTTACATGGGAGCCTGTTCCAGCATCTGGT AGAAACGGTCTTATTGACGGCTATACCGTGTTCTACAAAGCAGATGGTACTCCTAGCTTCATTGAAGACA GTCTAGATCCATCAGAAACTTCACTTATCATTACTGATCTGGACATTGCTCAGGTATACCAAGTACAGGT CCTAGCATTCAACATGGTGAATGGAGAGATGAAGATTGGACCTAGATCTGCAGTACAATCTGTGACGACG GGTGATGACCTTCCTGGTCCTATCAATGGGCTAACTGCATACCAGGAACCGACATCCATCAGACTGCGAT GGAACCCACCTGTCGTTGCTAATGGCCAGATCCAGGGCTATGCCATCAAGTACATGGCCATGCGACGCAG CGACCTGACCTCGACAACACAGGCCACTCCCACCAATCAGACAACAAGCCCCTCCCCCTTTACTACAGCG TATGAAGGAACTACAGTCGCAGGTACACAGAACAGGACTAGAAGGCAGACAGTCAACACCTTTTCAAACG AGACCCATGGCATGATCGAGACCACAGAGACCACGTACACCCTGACTGGTCTCCTTCCAGAGAGTAGGTA CTGGGTGGGAATCATCGCCAAGACCAGTGTCGGCTTCTCAACTAACGTCGTCAGTATCTATGTCATTACG GGTAAACTACCTCCAACACCAGAGCTGACCACGCCCAGCCCCGCCCTGACAACCACAAATGCAACCATGA TAGTTTCATCCGGACTAGACTCGTTCTTCAATCTCTTCAATCTACCAAAGACATCATTGATTCTCTTTCT GTCTATCATTGGCGTTGGATTCCTGGCCATCATCTTGGCCATCGCAGTCTTCTCGGCGTGGTGCAGTGGA CGTCGACGACATCCTCATCACATCAAGAGAAAAGCCACTCTCCTTATACCAAATGACGGTCGATCATCCC CTGGGGGCAGTATGCCAAGTGATGATATCATTATGGCTGGCCATTCACGCTCTGCCAGCAGCAGTTCTGT CTCTCGATCGCACTCCCCCAGCGCGGCAAGCAGCGGCCTGGCCGCATCCTCGGAGCTTCCCTCGACGGCT GGGACGTCGCCAATGATGGATTCTCAGCCCCTGATCCACGACAGCAGCGGGAGCGACAGCCACAACTCCA GCCACCACTCTGACCCTAGCCGACCCCGGGCTAGCTCGTCCCCGGCGAGTGCCCAGCTTTCGGTGAGGGC GATTCCCCCGCCACTGACCCTCCCCGCAACTGCCTCAGTCAACCTTTACCCCACCGCTCCAAACCCAAGA AACGGCAGATTAAATACAAATAATGGTTTGCTGGATACTTCACCAGCCGGCTTAGAAGCACTATATTCAA GGGTAAACCGAAGCAACCTGCAAGCACCTTCACGATTAAAGAAAGACAGTCTGGCGGCCATAGCGGTCCT GCTTGACCAAGAGGAAAATGAGTCTGACCTCCGACCCCTGGACAGTCCGCCCTCTGTGGTCATATCAAAT CAAAGGACAACATTATAGCCCGTTCCGACCAATCAGAATGCAGTAATGCTTTGAAAAACATTATGGAAAA TGACCAAAGAACAAGATTGCTAACTCAAAGCGAGTGGTGGTGATTTTAAATCTATGTTGAAACTTTATTT TCGAAAGTGGATGTGCAAGCAAAGGACGACATCATCAGTTGTGCAGATGTGTGCGTGATCATGTGACTGC AGCGCAATCGATGTGGAATATGGATCGAAGTTGGGCGCATGGAGCAGATGCGAGTCTACATCCCCAAGTT TGCTGGAATAATTTTCAGTATTTCATGTTTGTCCCACAAGCATACGATAGTGCCTAGTTTGATGAGAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds