Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030990968.1 PREDICTED: Strongylocentrotus purpuratus uncharacterized LOC115917945 (LOC115917945), transcript variant X2, mRNA ATTAGTAATACGCTTATTAAATGCGCACACAAGTTTAAGCGCAGGCAAAGAGAACAGAGAAGATACAGTA CGGTGAATAGTAGCGAACGAGCCTCATGTAATGTAAACATCATCTTCAACGTGTGATCGCGATAACAAGG TGCGTGTACGTACGTATTATGCGTAGATCTACTGCTTGTTTTGTAATGAAGAATTGAGATCAATGTCGTG GAACTGAGCACAGAATGACGTAATACCAATATGGATTCTGCTTTGTCATTGGCAGTCTCATTAACATGCT ACTAGACGTAGTACCACACGGAAGATTCACACGCCGTCCTGCGTTCAGCTAATCTTCAAGCTAAGAGGAT CTCTTATAAGCACTGCATCTAGACATCTTCCTTATCTTCGACAGTGCGTGAGCACGCATCAGGTGATGCG AAGTGCGACCGGCCACACATGACATCAGGCATATTTCATCGCTATGATTTACAGCTTCGGAGATGTATGC TTCTTTACAGCGCTCCCGTACGCCCGATCTTCCACCTTTTCTCGGTACCGTCCAAGCAAGATTGCATGCA GAAGTAAGTCATCATGGAGTCTCAGATAATCACCACTAGTCTAGAGTCCGATCAAAAGAACCCTACTTTG CAGGTGGTTGCTGATCAACCCGCTGTTGATCTCGACGATGACCGGTTTGTGATCACGGATAAACCAGGTA GTGATGACGGATGGATAGAAGACTCTGACGAGGAGGTTCCCGCTCTGCGAAAGCTCTCCGACGTCGAGCA CGAAAACTTTGATGATGTCGATAACGATTCGGAGTTCCACTATGATGAAAGTTTCCTGTCGACAGCTGAT GACTGCGCAGAAGAGTTTCTGGGTCTTAACAGCGCAGATGAGATAGCGAACGGGACAGAGTCAACGCCTT ATACAGACGTCTATTCATCCACTCAGAGAAGTGCACCAACTTCCGTCGGTAAGGCCAGTGTTGTTCAAAA TCAAAGTTTTGCTGTTAATAGTTGTCAGGACAGAGTCGAGGTAACTGCTAGTGGCGAGGATTCCGATAAA ACTGCTAGTGCCGATGAAACCGCTAATGCCGAGGAAGGAAAAGGTGAAGTTATGTTTTATGGAGATAAAT TTAGCAAGCGCGAAACCACGTCACAAACGCAACAAATCAAAACACTGGTTGGTAAGCAAGGTCACGAGGC AAAGGTCAAAGAGGGAATCGATGATTCGATCGAAAGCAAACAATACTGCACCATGAAGTTGGGACGAAAG GAGACACGCGGGTCTTCTATGTTAGACGAACTACTGTCCTTCCCTGAGTCAAAAAGAGCAGTATTGCCAG TTTCTGCGCTTCCCACAAGAGGGGTTAAAAAAGCGCGAAGAAGGAAAACGGGTGGTAAAGTGGCTTTCGC ATTTGATGTCAAGGATCGAAGTAATAGATTGCGGCAGACAAAGGTTTCAACACCTAAAGAAATGGCTTGT GAATCTGAGACACAGAAGCCTGGTGAAGAAGAACTCACGACAAACCCGAATCTCATTCCCCCCATGCCAA CTAGTCAGATGTGTACTTCTTCTCGCAGTGAACCCACACGGTGTTCAACCCCATCTACCACATCTATCAC ATCGAGCGCTTCTCAATGTTCTATTAAACCGAGGACTGTACCTTTAAAAGTGGATGTGAAGGGGATTTAT CCCAAGGATGGCATTTTATTGACAAATGTGTCTACCCCATCCAGCGCCTCTAGCATAACCCGTGCAGAAA GTAGCGTAGGACGTGAAGGACTCGCAGGAGAATCTGTGGACTGTAAAGGACTTGATACAACAAGGATTAA TGATGTTATTCGTAAGAACTCTGAGTTAAAGACAACGACGTCTGAATCACTTCCAGAAACAAGTAACCAG AAAACGTACCTATTCAAAGTCCAGGCGGGATCCAAAGCGGGCAAAGCCGATGATAGTAAGACTTCCGGTC TGTTTTCAGGCGATGAAGAAGGTCGGAAGAAACGTTATACGTCAGTGGACGAGTATGTTAAAGACCTGAA GCTTATGATGAAAGAGAAGGGTATCAAGAATATGGTGCTGCAGGGTCCAAAGCAGGTCATTAATGATGTA ACAAAGAGGTTGAATGATTCGGACAAGAAGAAGGTCCTCTTTCGACTGGGTGTACCACAAACACCTGCTC AAGAAGGGATTTCTATTTTGCGGCCTTTATCGAAGGTGAAAAAGTCTGCTCCCGCAAGTTGCGCGACTCC TTCCTTGATCGATTCACAGATGAATAAACCGCCATTGAAACTTGATCCCTCCAATACTGGCAACGTATCG AAGGTGAAAAAGTCTGCTCCCGCAAGTTGCGCGACTCCTTCCTTGATCGATTCACAAATGAATAAACCGC CATTGAAACTGGATCCCTCCAATACTGGCAACGTCTCGAAGGTGAAGAAGTCTGCTCCCGCAAGTTGCGC GACTCCTTCCTTGATCGATTTACAAATGAATAAACCGCCTTTGAAACTGGATCCCTCCAATACTGGCAAC GTATCGAAGGTGAAAAAGTCTGCTCCCGCAAGTTGCGCGACTCCTTCCTTGATCGATTCACAAATGAATA AACCGCCATTGAAACTGGATCCCTCCGATACTGCCAACGTATCTGAGGAATCAGCAGCGAAAGATGACAA GCCTTCAGAGTTTAGCATTCCTGCAAAGTGCGCGTCATTTACCCCAGAAGTGATCACCGTTAAATATCCT ACGCCAGTGAGCGTCGGAAACATCGCAGATGAAGCTCAAAGTTTGCCAGCCACTACGTCGAATGTCTTCA AGGCACTTTCCATTCTAAAATTGGGTCAACCCGATGAAGACCCAGCTGTCCCGCTATCAGCACCGATAAG CAGTGCCCGTCCTACAGACCATGCGATCGAAGGTATCATTAAAGCAAGGATGGATACAAATAATCCGACA GCTGGAAACACTGTGATTGATTCGCTAGGAACGGTTATTCCATCAAGGTTGACACACGCACCACCATCTA CCGATCAAACAGCTTCAACCCAACAGACACAAAACTCTACTCTTGAGAAAACGAAAACAGTGACTGCTGG CTGTTATAAACCTCTTGCCGCGAAAGTTGCCTCCAACGCTGGGGAAGGAGAAACTCGCATCACAAGATCT AAGTCACGTGCGGCAACAGAGACAAAACGCAAGAGTGTAACAGATCTCGATATAGCTATGGCACCACCTT TAAAGTTAGGTGATAAAACCTCTGCTGTCGTAGGTGATCAAGACGGTATGTTACGTTTTCGGGCGCCCTC TCAGTCCTCACCATCATCAATGTTACCGTTCGTGATGAATACTTCCGATAAGACAGATGGTACCTTAGTG GGACCGTGCGTCTCTTTTGTTGGTTTACCAAGATTACCAAGAACATCTGCGCCTTTGTTGCTACCCAAAA GGACGAATCTAGTCCGTTATGTTGTCCTTGGCCCCGATGGTCAGCGGAAAATATTGCAAGTGCCCGGAGG AATCCCTGTTCTAGTCTCAAAAGCCTTATCAGGTCAGACCCCGTTGATACATTGCAATTCTAATCTTAGT ATAGGTGCTTATACAGATAATTCCGTCCTAGGAGATTTGTCGGCTACCAAAGAAGTGGTCGATGTCAGAA CCGAAGTTCTGCCATCTGGCGCCAAAGTGAAAATAGTGAGAACGAGAACTAAATCTTCACCAGAACATGT TGAAAGAAATGTCAGGACAGATCCTAAGAAAATAGTAATATTAGGAGCTAATGAATCCCCTAATAGTGGT AAGAACATAGTATCCCAGCACGATGGGTCGTTTGTATACACTCAAAAATCAACCACGGCAATCAACCAAC TTGAGAACAATCCCACGGAAATTGCCAGAGACCATGATAAGACTATAGCTAATATTGCCAGAGACCATAA TGAGACTATAGCTAAACAGGTTTCGCGGAGTTCTGAACCATGTGACGGACAGGAGGGTACATGCGAATCC ACAGAGAATATTGGGGTCAACTCACCCAGCCCACGGAGGAGTCGGCGCGAGAGGAAAGTCACAAGGCCAT ATTCTCCGCCGCCTCAGAAGAGACGGAAATGTACATCTTCACCATCATCTTCGGACTTCGACGTTTCATC TGCAGAGATCATCTGCTCCTCTCAACAGCCGTCACCTAAACCGTCTGCTAGTGCAGTGGTCGTGTTGAAG AAAGACATCGAACTTCCGCACTTGGTCAGGTTATCGGGTAACACTACGGTTGAATGTATAAAGGAGGAAG ATGGCCAACAAGATACTCGCACTCCTAAGAAGGTGTTAAAAATACGCATCAAATCGGAACCGCTGTCCGA TGACGACGAGCCAATGAACCCTGCCGAACCCAGTCCGAATCTTGCCGAAAACAAGACGATCAAACCCGAA CCGGATACTGACTCTGATTCAACAGACATTCCAACTGATCCGGAAGATACCGATGATGAATCTTGCCATC CGAGTGACAAACCGACAGGACTTCTTGCCGATGCGAGGCCAGCCGATGGGACTGGCGAGCTCCCGAAGAT TTCCGATTCAGAGTATTTGTCGCGAGCCGAGAAAATGCGTCTTCTAAAGCAAAGGATTCAAGAACAGGAG TCGATGCTTGAAAACATTCAGAGACAACGGCAACAACAAGTGATGCAGAGACAAAACAATCCTGATTTAG AAGACCTTTTCTGATTAAAAATATTCGCATATCTTGTCGGTACTGCTGATTATAAAGTACTTAAAGGGTG CCTGCTTACAAAAAAATGGGCCATCGTGAAATAGATATACTCCAGTAACTATACTTGTTGTTCCATACCG TCTAAGGATACCACCCACAAGAGTAGACTGACAACAGGCCGATTAAAGTCACATTTCACTGAATGGCCCA GAATTGGTCCGTTTGGATTCGGTGTGACGTCATGACTGAGGTATTGCATTCAACTCGGTATTACTGTTGT CAATTTTGTGTTTGTATCACAGTGCATAGCTCGAATATAATACTTGAACCAGTTTACATACACGAGTACA CATTATACATGATGAATGCTTCTTCTCTCACCATACCTCGATCACACCGCTAACCGACTCCATACTGGAT CCAAACAGACTGATTATCGGAGATTCGGTTTGATATATTTTTGGTTTCGTTTACTCTGTTGTCTGATGTG TATAAAATATAAAGTCTTTGCATTTAAAAAAAAAAATCATAGACGAAGTTCGTACAATTCATAAGGCGGA AGAAAAGTGTAATACTTGTTAAGTGCCGTGTTTGTCACTCTTTTGTCGTGCATGTACTATATAACAATAA CATACATGTACTATTCCATGCTTGGAATTTAAATTGTAAATTGATCTATGTTGTTCACAAAAAGCTGCCT GCTGGGGTAGTTACTCGTAACCGTGAATAAGTCTTACTTCTTGGAAATCCCATTGAAACGTGCGTTATAG AATTAACGCACGTTTCAATGGGATGTCCACGAACCTAGACTTAGGACGTTTTCGAGAAACTGGCCCCCTG ACCTAATTTATTGTGATTGACATAACATGTCGCACTTTGCCCATCATTATTATCAGTATTAGTAAATGTT GACAATCAAACTAATATTTTGTTATGGTAGGTCCATGGTCTAAGCTAAAAGGGGTGTCCCTTTTATACGA ACTTGCAGGTATTTTTAAAGAGAAGGTTTAGTTCTGGGAAGAGGTGAACAATAATTTTTGTGAGCGTTAT CCTTGTATTGTGCAAGTGTGGAAGAACATCAGATAAAATAATGTTCCCTGAAAAGCATGGCTCTTCAAAT GCCTTAATATTCGAAATATTGGAAGTAACATCATACAAAGCGGGACGTTTTTTATGCCACATGTTTGTGT AGTCCCATATACATCTTTCTGTGTACAGTGCTTGTAACTTTACCAAGACTGGGCCAAATTTCTTATCATT TTGATGACTCCAGAGCCTTGCAGTAGACCTACACATCAATACTTATATGATACAGGATCAACCTTCTCTA AACGATTCCACATGTTTCTTTCACAATTCAATTGCCTGACCAGAACTCAACTTTATCCTTAAGTTCTATC TCGTGTAGAACACTGTTTGCACCAGTATAATTACAAGCTTCTGTCGAGTCTACAGCCGTATTCAAAAAGA AGATACTTCTCAAACAGTTCATTGTGTATTCCTTCAAATTGTGTACCATGTGTTCAATATTGTTTGTATC AGTTTTGCCTGTAAGTCTTTGATACCTACACTTAACTAAACAACTTCATACCCTTACCAAGTTTTGTAAT TTTGTTAAGTATGTGAACGATTGATTTGTCCCGATTTATGCTTCTTGATAAAGCCACTTTTAAAGCTTTA CATCTAAAAAGTATTCACAAGAGTTACAAGAAAAAAAAGGAAGCAAGAAGGGTTACGAACAATTTGATTG TTAACTGTACATCAACCTCATAAGGCTATAGAGTTTATTTTCACTTTGTTACTATTTGCCTTTTACAGGA TGTTTTAACTTTGTCATTTTCGTTATCTCGAGTTCATTTTACAACGTTTTTGTTTTTATCACGAATTCAT CAGAAAATATGGGTTATATTTGCCCTCGTCAGCACAATGTTTATGGAGTTCCATGATAGGTTGTGCAATT ATTGGTGTCGTTTGCTTTTTACTCACAGTTTAGGAAGAGGTACAATTTTAGATGGAAATTGTTTTACAGG ATTAAAAAAAAATAAAACAACGGATTTTTTGTTTAGATGGATTTTTCCCCCACCATTGCAACCCATCGTT TGTCCTTTATGGACTCGACAAAAAGTTTCTTTGTGAGCTGAGTTACTTTCGATACCATACATTCATGCGT TTTGCTGTATATATTTATGAATTTGTTTTCTTCATTGGAACGTATCTTTTCGCGGTAACTAAGATAATTT TCTGCCTCATGCATTTCATCATTTTTATGTTTAAATATAACTACGGAAATTTGGACTTGTTGCAGTCTTA TGTTATCGTATTGATATACAGGAACAGTACCACTTATACGGTACTCCCACCCTTGGCTGCCCGGCAATAG ACAATACACTGTTAACCACATTAGGAGACAGTCAACAACAATGTTTTGATCATAAGTTTGGAATTACCCC ATCTACGGCCAAATTTGCAAAAAATTGCAAGTGCAACGGATTTTCCAGAAAAAAGTAAAACCAATAATAA TCGTATTTGCAATGCCTTTGCTCCTTAATGGTTTTTCCTTTCCTACCCCCTCGACCCTCGTTGTTTCCTA CTGGTAACGGTTGTTGCCAATTCTGTTTGATGGTAGGGGTAGAGTAAAAGTTAAACAAAATTAGCTCGTA TGTATCTCGTGTGGGTATACAATAATTGTTACTTTACGTAATATTTCGAAAGTTATGATATTACTCGTGA TCATCATTCAAAACTAGGTACTAGTTGTCCCATCAGGGGAGTGAGGTTTTCATTATATCTTCCAAATCTG TGATAATTATTATGAATAGATTGTTTTACTTTACTGGTTGTGTTTCTATCGTATTTTAATTATGTAATGT TTTCTCAGTTGCTAGGGATGTACTTCCTGGCGTCTATTCTTACCTTCCGACGGGCATTACAAAGTACCAA ATTCAACGAAGCTTGATGTTTTTGACGCATAGATGTTATTTAATTGACCTCGCAATCATAGTAATTATAC ACAAAGTACTAAAGAAGAATGTTATATAAAACCCTTGTGTTGTTTGTATACGTTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
