Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT110267.1 TSA: Strongylocentrotus purpuratus WHL22.435935.0 mRNA sequence GAAAAACTAGCGAACAACAAGCCACAACAAGATTTGTACCTATACTCAGCAGTGGGGTCTAAATTTATCA TTCTTGGGTTTGAAGTCCAGTAGTGTACAGCATGATGACCTTGTCAGCCACAGCTGTGGAGTTTACCCCA GGGAAATACTGGAGTGGATTACCAGTACAAGAAGAAAAGGAGTCTGACTACATGTTTGAATTGAAAGACA TTCTTTATCAGCTGAGTATCAACCCTGGCTTATTTCAAGAATGCATGAACTCCCTGACGGACATCCTTTC CGTGGCCATCAGAGAAGATTGGCAGCTGGATGAAGTGGCAGATGTCATCTTTGAGCAGTCGACCATGGAG CCAAACTTCACATACACGGGAGCCCGGATGGTCGATCATCTCTATAGAAACTTACCCAATCCACCAGGCA GAAGACACATGCGAACCCTCATTAATCAAAGAGCTAAGAATGTTGTTGTCAGGAGGAAAGAGATGGCGTT AGATCCTGCACAGCAGAAGAGGCTACATGGAGTTACTATGTTCATGGCTGAACTCTTCATGAATATGGAG ATTGTAGGAGGAGATGGCACTGTTCAAAAGATCAAGGTTTACCGAGCAGCACTTCAAGAGCTTTTCGAGT CACTCACAGACTACCCCTCAGAAGCCAACCTCAAATGTCTGGGTAACATATTCAAGTTGGCTGGGAAGAC AATAGAGGATTACGATCGAGAAATGAGCAACAGTGCGTCCTCTGAGCTCATCAACAAGATCTTCAACGAT GGAAGAAATTACATTGTCAATGGCAAAGTTGACAGATCTGTTAGAGATCAATGGCTGCAGCTGATTGAAT TCCGAGCTTCAGACTGGGGCAGGAGGCAAGTCAAAGGTCATAGGCCAAAGTACGAAGAGCCTGGTCCAGC AGGGGCAGCGGGGGCAGCTGCAATGAACGGTGCTGCTGGAGGAGATGTATTTACGAATATTCCTACATTT TACAGTGCACAGGGAACGGTCATATCTGCAGAAGAAGCAGGTTTCAACGCAGAGCTGTTTAATCCTGAGG ACTATTCCTACGAAGATGAAACTGACCCCAACAATCTGAACTTTGACCCTGCTCTTGATCATTATGGCTG GCAGCCCGAATTAGGGTCGGGTTCGGAGTCCGGAGTAACGCAAGACATGGCCAATGCTTACGAGTCCTTC CTGAGGGAGACGGGCCAGGAGGACCAATCGGGACAGACATGGGCTTATGAATGAGGTCATGTGACTGTTG TCCCTGTGATCATGTGACTGTTGTCCCCATGATCATGTGACTCTCTAGGAAAGGCAGAGTGTCGGTTCAA TTGAGAGAACTGCTTGCTTGAGGATAGCGACTTCCCACCTGGGCCCCATTTCACAAAACTTTTCATCAGT GACATATGACAGTTTTTGTTATAAGCTACTGAAATCCTTGCTTCTGATTGGTTATCAGCAGATTTGTCAC TAATATTTGTCATTTGTCATTGAAAAAGGGCTTTGTGAAACACCCACCTGTTGTCTCGGAAGGGAGTCGG AAGGGACTATAATCCATGCGCACATGCTGCCGATCTTCAGGGATGTCTTTGGAATCAGCAACAACCTTAA ACAGTACGGTTAAAGAGTACAAACAATGTGACTGCACTTTCTACACTCGTCGTCAGTATTCTGTGCTTTG ATGTGTTCCAACGTGTCTACAGGTGCTTCTGTGTTCACTTAATACCTCTTCGAAAGAAACAAATGAACAA AATCTACTTACAAAAGTATTTATATATATGTAAATCCCAGTACATAAATGTGCACTTGCACCTATGTAAT TTTTTTTGAGAATCAATCAATTAATTGTGTCTGAGTTAGCGCAATTTTAGCTCAGAACAGACAAAATATA TATATATATATATATAATTGTGCACACTGTGTGCGTGAATGAATCTGGGTTATAATGATATCTGTAAAGC ATAAAAAAGAAGATATTCTGTTTTTGAGTGCCATAGAAATCCAATTTTATTTAGTAGTATTATTAATTCT TGATAAGGTTAGATTTCTATATCATTACGTAAGAGTTTTGGACAGTACAAACAAAGAGTACAAAGGGGAT ACAAACAAATGAAGAATACTTTGTAGGGTGGTCCGATTCATTTATCATACATAGTATGATTGACATTAAA TCTTTTTTACTACAATGTATAGAGAATAAGAAAAGAAGAGCAGCAAAGAAATATGAATAGAAGAAAGAGA AGAAAAAAATGAAATAACTAAAAAATATTAAAAAACAAAGACATTTATTGGACTTTACTGGACTTTACTG GACTCATAGTAATAATCTTCAGTCTATTTTTCTCCTTTTAACCTCTATTTTGTCAATGTTTGGTTATTCT TCATATACATGTAGCTCCATAGAGAAATCTTTTTTTGTTCCTTTCATCCGTATTTCCCAAGAATGATTGT AACAATAGACAAGAAGGTTGACACCCCCCACTAAAAAAAATCAGGAACAAACTTTTCTCTAAGAACAAGC AGTTGACTTTACCATATATTACTGAAATGGGTACACCACGTACACTGCGTATGTTTGTAGATATATGTAT GTAAATGAAGATAAAAGTGCAATTTGAAACACAGGTATATAATGGCGTATATTTGTTTGTCAATATATGT TGGGTGTCATTCAAGGAGTTTGAAGAAGTCACACCATTTTGAATGTTTCACGATAACAGATGTTCATTGT CTATCAGAGCTGCCAACCAATACGTTTTTCCCGGAGTTATTCCGTTTTTTCCTCCAAATTAAGGTAGTAT GTTTTTTCTTCATAAAATACTTTTTTTAAATATATATATATATATATATATATATATATATTTTTTTTAA ACATACCGCACTTCAAACTACTGACCTAAAATGTTGATTTGATCACAAATTCAATAGAAAACTAAGTTGA AAACATACTTGAAGAGAAAAATATTCTCAAAAAGAATGAAACGCCAATAATAGTAGAATAACAACCAAAA ACATACTTGTAAATAAACTAAAGGTCCTACCGATATATGGAAAAAAAAGCAAAGGTTGGCAGCTCTGGTC TATGGTGCATTGGCTTAGCGAAAGGTGTGGAAGGGGAAAGTTAGGTTTATTTGCTAATTTCGCATTCTGT CAGCTTTTTGAATGTGATGGAGGTGCAATGGTCTTGTAACCTGGAGGTCCCGAGTTTGAAACCAAGTCGG TGTGCTAAAGGCATTAATACTCATTAATAATTTTGATTAATACTCATTAATAATTTTGTAATATTTTGTA ATTTTATTCTATTTTTACCCTTATAATAAGCAGGATCAATATTTTTGGGGTACTTTTATTTAATCTGAGA ATTACCTTAAAAAGCCTTGGCGTTGTTATTCCCACCAATTTATGAGTAGTACAAGTTTCTTTTGTATCCT TGTTATATGTATGTACACATGTTGATTGTATTGCTTTTTCTTTTTTAACCAAATGTAAAGATGAACTTGA AACATTAAAACTAACATAACAAGCATGCACATGCTGTCTTAGCAATCTGGTAAAAACAAACCAAATCAAT TAATACGTAAAAATTATTCCTGTTCAATATTTTCACACTGTCACTTAGATTGCCCCCCCCCCCCCCCAAA AAAAATAAAAAAATAAAAAAAATAAGAAGTGAGAAAACTTGAAAAGGATGCTTATAGTAATATGGTTATG TACAAATCTTTTCCTTTTTTAACAAAATCTTCTGAAAAGTTTTGTGGAGGATCTGATGAGAAATGTGGTG TCCACCATGTTGATAAAGAGTATTAAAGCAAGGATCTCGATCTTAATCACCCTCTTTGATGACTAATATG CTGTATTGGATGTAACGATATTATTGCACCGTTTCTTGCCTTGTATATATATTTCAATTATAAAAAATAA GGCAATGGTATTACATTTTTCAAAACAAAATGAAAGTTTTTAACTGAATATAATAAGCTCTTCTAAACAC AATGGCCCGAATTCACAAAGGTGGTTTTCGTGCGTCATTTGAGGCGTTTTTACAAACCAGGTTTGTCAAA AACACGTAAAAGGCGTCGTGACGTACGTAAACCAAAGGAGGTTTGTCAACAAACCTCCTTTGTGAATTCG GGCCAATTTGTTGAACTTGTAACTTTAGGCAAGAAGACTATTTGGACTGTTTGAAGAAAGATTTTCATCT TTTGTAACTACTTCGTTTAATGTACATGCACTTCAGGAAATTACAACCATGACCTACAAATCTATTTATT TAAAGAAATATTTCATGCAGTTAATGCTTTCAGTGCTTGTGTCCTAAGCACCTTAAATGGATCTTTGTCA CCATAGCCCCCCACCCCCCCCCAAAAAAAAAATAGAGAAAAAAAGGTGCATTGACCTGTAAGTAAAACAG TACCGGTAGGTGGTCAAGTAAAAAGAAATATTCCTTTAAGAAAAAAGAGGGCTTGTTTAGATATGACGTT GGCAAAACCACTGTTTTTTTAAATACATAAAGTGTAATACCCTTCACATTTCTGTTTATATCTTATAACA TAGAGCTTGGTGAACATGCGCAAGTCCTTGGTTGCGTGGTTGCCGCTCACTTAAATGTTAAAAAGTCGGG GCCTTCCTTGCAGTGGTTTTAACGCACCAATTCTGAACGAGCCTTTATTTTCCTTTGCATTAATGTCCTG GTTTTCCATTTTTGTTTTGTGACCGAGACGTTGTGGACAGACACATCTTCTCTTGTAAATTTCAAGCAAG CAATTCAGTATGCGCTATGATGAGGTTCTGGAATCTCAGTACTAAATCGTATCTCTCAGCTGTAACAGTT CCAAACTTAATTTCCTTTGTTCGAGTTGGGCATTATGATTTTTAGGTAGTAATAACATTACTGAAAATAA TATATGTATTGTTTACCCAGGGTAGCCTCATAAGTATTAATACTGTTCTCCCTGGCGGTCCTCCAATTAG TTTCAGCTAGATATCAAGCTTATTGCTTCTTTATCTACCAAATTGCTAGAGATATTAAGCTCAAGCCAGT TTCAAAACCCCCCAAAAAATTGCAGGGTAGTTTTTCAGCTCGAGAGAATGCAGACACCCCTGCTGATGCA ATGCTTGTATAAACTTCCATACCAGTATTATGGTGTGGTAAATTTATTTTCAAACCTTGTATATTTTCTG GCCCATAGGCAAGGGTCTTCCACTCGACAGTAAGTTGACCAATATCTGTATTAAAGGCATATCTGTACAA AGTGTAGGAATTGCAATTTTAAAATGTGAAAATTGGAAATCTGTAAAATTTGTACAGCAACTTGTTTGTA TTAAAAAATAAAGTTTTC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds