Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030989031.1 PREDICTED: Strongylocentrotus purpuratus liprin-beta-1 (LOC574986), transcript variant X3, mRNA TTTTCGTAGCATTACCGCGTTCGTGTTATTGAGTATCCCAACATAGATTGCTCTTTAGTACGCACTTCGA TTGCAATTGTTTACGGATTTATCATCGACCGCAGTCGAGAGGTATGACAAGGTGATAGGATCACAGTGTG TCACATGACCCTCAGTCTATTTTCTACCTTCCGTCTCTCGAGATCAAAGTGTGTCACATGACCCTCGGTC TATGTTTTGCTCCGGAGATCGAATACATTCCATGCTCAGCACATGACCATCAATGTTATCCTTGTAGACC ATGACGTCATCCAAACTACCCCATCAACCGCCATCCGCGTCTAAGCCTGCGACACTGTTCTGAACTCCCT GGACATTTTTGGCGCTAGGGGTGGGAGAGTCAATCGCAGGATGCAGTGATACCATCAGGAACATTGTCAG TTGCATGACGCCTTGAAACAGATTCATAGACTTCTTTTGAAGCAGAGAAAGAGAGAGAGAGAGAGAGAGA GAAAGAAAAAGAGAGAGGAAGAGAGTGAGTGACTGACAGAGAGACAAATAGACAAATTGAAAGGAATAAG GCATTTGAAAGCCTTATCCAACCAAGAGTCGTGTTGGAATTTCACGTAAAAAGCTGAGCTACTGGTGGAC TTTGAAGGTGTTTGGACCACACCGCTCTCCATATTGAGCTGCCAACCGCCGCCCATAGAGATCTGGGTTA ACAGAGTGCACCCTGGGACAATCTAGGGTACCTTCTGGATTCTTTTAGTCTCTGACATAGCGACGAAGAT GACAAATCTAGCATCGGATGCAAGCCAGATGCTGGCTGCTGCCTTAGAGCAGATGGATGATATTATTGCA GGTAGCAGAATACAGGGCATGGACTATGACAACGGACCTGTAGTGACCAACAACCAAGTCAACATCACAC ATCCCAAAGAGAACGGATCACATGCAGACGTCCCAAGACTCATCACAGAACTACGCTCAGCAGCAGAGAG ATCCATAGAGAACGGGGAGGAGAACCTACTCCATGATCGGGTAGAGGATTCCACTCGGCAGTACATTGTA CGGTTGCTAGGCGACAAGAAGGAGCTTGCAACCAGTCCAGGGTCTCATGAAAAGATGAAGCGACTTGAAG GAGACAAAGACAGCTTACAACTCCAGGTGAATGTATTGACAGATCAGCTTGAGGCCCAGAACGAGAAGAT AGAAGAACTAGAGTATGCCTGCGCAAAGAAAAGTAAACAGTTGGCTGATTCAGAGACTAAGTTACTTCAG GAGTCTGAAATCCACTGTGAACTGGAACAAAGCCAACAGAATTATGCTATAGAGGCTTCTAAACTCAAGG CTCGACTAGACTCTGTGGAGAATGAGACTCTTGTCGTCAGAGAGCGTGCTATCATGGCCGAGTCCAAGAT TGAGGAGCAGCAACACGAGATGAACAAGTTGATGTCAAAATATCAACAAAGTCAGAAAATCGTTGGTGAA CTGCAAACGGAATGTCATAAATGGCAGGAGAAGTACATGGAAACGCAGGTCAAGCTAGTTAGGTCACAGA CGGAGACAGCAGAGCTCAAGGCTCGTCTGCGCTACAGCCATGCTCTTCTTGATGATCTTCAAGCCAAGAA AGTCAAAACTCTAGATAAAGAAGTAGAAAAAGAGAAACTAAAGATTGCTGTAGATTCTCTGATAGCTGGC AACAAAGAAAAGGACAAGACGATAGAAGATTTGAACCAGAGGTTATCAAAGTTCTACCATGTACAGGAAA TGGCAGCCATCAATGGAAGAGTTGAAATAGATATGCTGCTTGACATTGAAAACCAAAGAACAGATAGTTT CTCAACCTCCAGCTCAGCTACCGGAGAGACAGACACATCAAAGGATAGCCACCAGGTCCCACAAGGATCC AGCCCAGTCAGTCCAGACAGAGACTACACCATGATGGTGGATAGGACTGAGGAGATGTTTGGGTCCAAGA CCAGCCGACGATCGGCAAGTCTGGAGAATCTACAAACCAATGTCCTACCATCAACGAATGAACTTTCCTC TGACCTTTCCCATCCCTCTCCTGACCCTCAAACGGACTTACCTGTAACAGGTGGCCCTAGAACTATACAC GTCCCTATACATATCCAAGGGGGCACCGTACAACCCCTTCACTCCACCCCTCAAGCTCCCAACCAGGACA GTTCAACCTTCCTTACAGAAGACCCTAGAACTATCCATGTTCCTATCCATGTTGAAAGGCTCTCACCAGG GCTAGCAGATCCCTCTTCCCTTCCAGGAGACATGGAACATCTGACCACAGGGTTACCAGAGGTGGTCACT TCTGCTTCAAGCAAAACCCCTCCTTTCCCAACCAATAGTGACCCAAGCTGGGAAGCTGTCCCTAAGAAGG TCAACTTTGACCTGGACGCAACGACGGAGATCAGTAACGATCAGAGAAGTTCAGTGGGCGAAGACTTTGA AGAAAGGCCGGGTATTGATCATGTGAGCGTGTTCCTCACTCAGGGCGCTAACTGCAGTCCTTCAAACACA AATGGCTATTTAGGGAACGGGGTACGACCCGACTCCTTAGACTCCCCTACTGACCTGACCTTCATTGACA TTGACGACGCCAACATGGCACATTTCCGTCGTGACGTTTCCCCCATTTCAGGTCATTTGACCCTACCTGC TCCCAAGAAAACGACCGACTCAGAGGGTGATTTAGCAGCCAGAAGCAGTCCCTCGGGCTACAGGACGCTG CCCTCCCCTCGTAGGAACCAAGAGTTTGATCTTCCCAACAAGCAGCAACAATCGGCTCACGGCGGCACCC CAGAGCCTAGGAAACCCAGAGCATCGTTCGGAAAGGGACTCTTCAAAATCACCTCCAAAAAGACTTCCAG TGCTCCAAATCTCGCCATGACAGAGTCAGAAGGGGAGGATGCATTAGGGGTACAGAGACCAAGAAATGTT ACCTTCCAGAGTCTGGAGAGGGGTGGTTTTCCCGCCCCTCCAGGGACACCGCCCATGGAATACCGCAAAC GTAAAGGCATCAAGAAACTCATTGGAAAATTAAAGCGTAGTGGATCAGTAAATCTTCACAATGGCGATGA GGATGAGGAAGCCCCGGTGGAGTTCTCCAGAAATGGTCGTTTCAGAGCCACAGCAGGACCAAGACTAGCC TGGTCTAGGGACCTCAAGAAGAATGAAAATGGGAATGGAACCAGTGAGCTGAACGCTCCATTTGCCAAGT GGGACAGTGAGCAGGTAGCTGATTGGTTGAGAGGGATGGGTCTCGCTCAGTACGCTGCAGCTTGTAGAGT CTGGGTTAAGAATGGTGGAACGCTGCTTGGAGCTGCTCCTCTGGAGCTTGAAAAGTACTTGGGTCTGAAG AATCCGTTACACCGGAAGAAGCTGCAGCTTGCCCTGCAGGCGATGGGATCAGAGTGTGAGGACAAGCAGG GCGACCTGGACTACCACTGGGTCACCAGGTGGCTGGATGATGTGGGACTACCTCAGTATAAAGATACCTT TCTGGAAGCTAAGGTCGATGGCAGAATGCTGCACTATATGACAGTGGACGATCTGTTGCTGTTGAAAGTA ACGAGTGCCTTCCATCACGTGAGCATCATGCGTGGTATTCAGTGCCTACGTCTTCATAACTTCCATCCGA GCTGTCTTAGGAGAAGACCCACAGATGAGCCTTATGAAACAGGGACCCAGGTTGCACTATGGACAAATCA CAGAGTGATGGAATGGTTGCGGTCGGTAGATCTGTCTGAATATGCACCTAACCTCAGGGGCAGTGGGGTA CATGGAGGATTGATGGTCCTCGAACCTCGATTCACGGCCGAGACTCTAGCCTCCATCTTGTGTATCCCTG GAAACAAGACGTTGCTACGGCGACATCTGAGCACTCACTTCATCTCTCTGATTGGTCCAGACATTCAGCA GCAGAAGAGAGAAGCAGAGAAGCAACCCTTATTTGTACCTCTCAACTTCCTGGCTAAGGTCAAGCCTAAA AAGAGAACGTTTGGCAAGAGCAGACGAGGGACTGAAATGGAAGACTATATTTGCCCAATGGACCTTGGTC ACCCCTCCAATCTGAATGGTCTGTCTCATATGAATGGTAACAGACCTGCTCCACCTAGTTACAAGGTGGA AGTAAGAAGTGCTGGAAAGGTGCACAAGCAAATGGATGAGGATCAAGCAGACGGCCCGGAAATGAAGGAG GGAACTGCTCAAAAGTTTGGCGCCCTCTCCCAAGAAATTGATTCCTTGACGACCATGCTCTCAGACTCGG ATATGGATAGGAGTACACATGTGTGATGTCATCATACCAACCTCTCACCCAGATGGGCCTAGGCTTTGAT GTCATCATGCCAACCTCCCACCCAGATGGGCCTAGGCTGTGATGTCATCATGCCAACCTCCCCCCCAGAT GGGCCTAGGCTGTGATGTCATCATGCCAACCTCCCACCCAGATGGGCCTAGGCTGTGATGTCATCATGCC AACCTCCCACCCAGATGGGCCTAGGCTGTGATGTCATCATGCCAACCTCCCACCCAGATGGGCCTAGGCT GTGATGTCATCACGTCTCATCCAGCTACAGTCAAACCTGTCTATAGCGACCGCCCAAAGAAAACACAAAA AGGGGCCTTTGTAGACAGGTTCCTTTAGTACATGATTCAATGAGAAACCATTTTCAAGGGAAACAACAAA TGTGGCCTTTGTAGACAGGTGGTCACTAAAGCAGGTTTGACTGTATTACAAAGTATTGCCTTTGTTAGAA AGCTGAAACCAAGCCCTACTGTATGAATGCTACATTTTGATTGGCTGATTAGCTGATTGTATCAATGTCA CTGTTGATGGCAATATGCTGTCAATGTTTTTTCACTAGCTCTTATAACATCAGTCCACATTCACATCAAT TGCATTCTAAGAAAATTTGCTGATGATGTTTCTTTCAATGAATGACATCTAATTTTTTTATATTTCTTAC TGATAAAATGTACTTTTTACTGCATGTGATATCTTTTAGGCACTTATTATAGTTTGCTCACACTGTCTGT AAACTGGTGAGGACATTTTAACAAAGAAGGAAAAGTAGAGCCACAATCAAAACCTGCTGATAAGAAGTAT GGAGCTTTTTTTTTATCATATGATCTCTTCTTCCTGATTGGTGGATAATATGAATGCTGCTTCTGATTGC AAGTTATTGGCCAATCACATCACAACCACTAGGTCTTTGTGCGTTGCTCAACCATACAGGAGCTACCCAG CTCCCATAGGCAATGCATTCTGCATATTCTTTGAAATGCCGTTACTTGAAAGAATGCAAAGATTTATGAC TTTTTATTCGATGAATTACAAGGACTAGGAAGTGTTATGGTGCTTGGTCTGACTAGTCTGTTCACACATC GCAGGCAGATTTATTTCGTTTGATTTCTTTGTAACATTTTTCATTTTTAATTTGCTTCTTACAATTGCTG ATAGATTTGTGTATCAATTGAGGACAAAAAAGAGATATTGTTTTGAACTCTTTTATTTTGCAGAAATGAT ATTGATTTGAAAAATGTTTAATTCATTAGCTGAGAGGAATTTGATTTACTTTGACCATCTCTATCCTCCT ACAATACAATATACATAAATTGTGTGAGCCCATCTTTATCACTTATCAGCAAGTGGTGTAAGCTCCATTT GTTTTTCTGTGTTCTATCTAATGAAAACTCATTGTAAGTAAAATAACAACACCCTCCTTTTCTAAAGAAA TTTAAAGAACAATTCACAAATCTCTTTCACTTCTATTTTTGGAAACCTCCAATATATATATATATATATA TATATAGACATGTATATTTATATATTACTAAAGGCGTATTTAGAGGGATATTTCAAGT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds